AT2G31580

tRNA(His) guanylyltransferase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
13440842 .. 13445932
5091 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31580.5

Sequence Viewer

Length: 1704 bp
ATGATCAATTCCGTCGGCGTTGTTAGAAAGGAAGCTGAGAATTGCAACTGCTTACAAGTTTTTTTTGTGTCTGGTAGTTTCAAAGTCGATAGCGTAGAAGCAAAGAAGAAAGAAGAAAACTTTCGTGAAACCTTGAGGGATATGGCGAATAGCAAATACGAGTATGTGAAATCATTCGAATTGGAGGATGAAGTCATGCTTCCTAACTTGATGGTTGTTCGAATCGATGGTCGTGATTTTTCTAGATTTTCTCAAGTTCATGAGTTTGAGAAGCCTAATGATGAAACAGCCCTCAATTTGATGAATTCATGTTCAGCTGCGGTTTTGGAAGAGTTTCCTGACATAATCTTTGCTTATGGATACAGTGACGAATACAGCTTTGTATTCAAGAAAACATCAAGATTCTACCAGAGACGAGCCAGTAAGATTTTGTCGTTGGTAGCTTCTTTCTTTGCTGCAGTTTATGTAACAAAATGGAAAGAGTTTTTTCCCCAAAGAAAATTATTATATGCTCCGTCCTTCAGTTCAAAAGTTGTAAGTTGTGCATCAGCAGAGGTTCTTCAGGCTTATCTCGCGTGGAGACAACAGGACTGCCACGCCAACAATCAGTATGACACTTGTTTCTGGATGTTAGTTAAAAGTGGAAAGAGCGTAAGTGAAACCCAAGAGATTCTAAAGGATACACAAAAACAGCAGAAAAATGAGCTTCTCTTTCAGAAATTTGGTATCAATTACAAGACGCTTCCTGAATTGTTTCGCCAAGGATCTTGTCTTTTCAAGAAAAAGGTGGAAGAAACTGTAAAGCATGACGAAAATGGCAATCCTGTAAAAAGATTGAGGAGAAAGGCTGTTTTTGTACATTCAGAGAATATTGCAGGAAGAAGCTTTTGGAATGAGCAGCCCTCTCTATATAATGATCTTGGCCACTTCACGAAAGACATTGGAAAAATTGAACCAGATTTTATTAGGTCGTTTCAGTTTGAGAACAAATTGTTACCTTTAACTTGGGTCGTGGTTAGGATTGATGGCTGTCACTTTCACAGATTTTCTGACGTTCATGAATTTGAGAAGCCAAATGATGAGCAAGCTCTGAAACTTATGAATTCATGTGCAGTGGCTGTTCTCGAGGAGTTTGAGGATATTCACTTTGCCTATGGTGTCAGTGATGAGTATAGCTTTGTTTTGAAGAAAGAATCTGAGCTCTACAAAAGACAATCCAGTAAGATAATATCTGCAGTCGCATCCTTCTTTACATCCACATATGTGTTACAATGGGGAGAATTTTTCCCTCACAAAGAATTGAAGTACCCTCCATCATTCGATGGACGAGCTGTATGCTATCCAACATACAATATTCTCTTGGATTATCTGGCGTGGAGACAAGTTGACTGCCACATCAATAATCAGTACAATACATGTTTCTGGATGCTTGTTAAGTCTGGAAAAAACAAAACTCAATCCCAAGATTACTTAAAGGGTACACAAACACGAGAGAAAAATGAGCTGCTTAGCCGTCAATTTGGAATTGAGTACAACTCATTACCTGTAATCTTTCGAATGGGTTCTTCGGTTTTCCGTCTAAAGGAAGCTGAGAATGGAGTAGTTTCAGGGAAGAAACTGGAAGGAGAAGTGGTCGTGGATCATTGCAACATCATCGAACGCTGTTTCTGGGAAGAACACCTACACATTCTTAGCTACTCATAA

Protein Analysis

567

Amino Acids

66.22

Weight (kDa)

6.92

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thg1 PF04446 6 - 134 2.8e-49 tRNAHis guanylyltransferase
Thg1C PF14413 139 - 225 1.1e-31 Thg1 C terminal domain
Thg1 PF04446 274 - 401 6.6e-54 tRNAHis guanylyltransferase
Thg1C PF14413 405 - 485 3.2e-34 Thg1 C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 575
AciI CCGC 1 cut(s) 320
AclWI GGATC 2 cut(s) 772, 1647
AcoI YGGCCR 1 cut(s) 922
AcsI RAATTY 5 cut(s) 304, 719, 1061, 1102, 1280
AcuI CTGAAG 2 cut(s) 505, 545
AfaI GTAC 5 cut(s) 858, 1307, 1409, 1480, 1532
AfiI CCNNNNNNNGG 1 cut(s) 1582
AflIII ACRYGT 1 cut(s) 1415
AgsI TTSAA 7 cut(s) 82, 388, 528, 778, 953, 1186, 1303
AjuI GAANNNNNNNTTGG 2 cut(s) 871, 903
AleI CACNNNNGTG 1 cut(s) 1262
Alw21I GWGCWC 1 cut(s) 1203
Alw26I GTCTC 3 cut(s) 406, 574, 1372
AlwI GGATC 2 cut(s) 772, 1647
AlwNI CAGNNNCTG 1 cut(s) 1118
Ama87I CYCGRG 1 cut(s) 1124
AoxI GGCC 1 cut(s) 922
ApeKI GCWGC 4 cut(s) 317, 455, 898, 1504
ApoI RAATTY 5 cut(s) 304, 719, 1061, 1102, 1280
ArsI GACNNNNNNTTYG 4 cut(s) 214, 246, 332, 364
Asp700I GAANNNNTTC 5 cut(s) 120, 173, 333, 753, 1561
AsuII TTCGAA 3 cut(s) 177, 220, 1555
AvaI CYCGRG 1 cut(s) 1124
BalI TGGCCA 1 cut(s) 924
BanII GRGCYC 1 cut(s) 1203
BarI GAAGNNNNNNTAC 2 cut(s) 1665, 1697
BauI CACGAG 1 cut(s) 1488
Bbv12I GWGCWC 1 cut(s) 1203
BbvI GCAGC 4 cut(s) 304, 442, 910, 1491
BccI CCATC 5 cut(s) 205, 221, 1019, 1316, 1321
BceAI ACGGC 1 cut(s) 1497
BcgI CGANNNNNNTGC 4 cut(s) 1317, 1351, 1636, 1670
BciVI GTATCC 2 cut(s) 353, 673
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 406, 574, 1372
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 2 cut(s) 456, 1233
BfuI GTATCC 2 cut(s) 353, 673
BisI GCNGC 4 cut(s) 318, 456, 899, 1505
BlpI GCTNAGC 1 cut(s) 1508
BlsI GCNGC 4 cut(s) 319, 457, 900, 1506
BmeT110I CYCGRG 1 cut(s) 1124
BmsI GCATC 3 cut(s) 554, 1250, 1416
BplI GAGNNNNNCTC 4 cut(s) 887, 919, 1520, 1552
Bpu1102I GCTNAGC 1 cut(s) 1508
Bpu14I TTCGAA 3 cut(s) 177, 220, 1555
BpuEI CTTGAG 2 cut(s) 154, 237
Bsa29I ATCGAT 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 760
BsaXI ACNNNNNCTCC 2 cut(s) 1617, 1647
Bsc4I CCNNNNNNNGG 1 cut(s) 1582
Bse1I ACTGG 3 cut(s) 420, 1218, 1623
Bse3DI GCAATG 1 cut(s) 1642
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 760
BseGI GGATG 5 cut(s) 193, 633, 1241, 1253, 1431
BseLI CCNNNNNNNGG 1 cut(s) 1582
BseMI GCAATG 1 cut(s) 1642
BseMII CTCAG 3 cut(s) 27, 1188, 1581
BseNI ACTGG 3 cut(s) 420, 1218, 1623
BseRI GAGGAG 2 cut(s) 853, 1142
BseXI GCAGC 4 cut(s) 304, 442, 910, 1491
BsgI GTGCAG 1 cut(s) 1131
Bsh1236I CGCG 1 cut(s) 575
BshFI GGCC 1 cut(s) 924
BshVI ATCGAT 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 1203
BsiHKCI CYCGRG 1 cut(s) 1124
BslI CCNNNNNNNGG 1 cut(s) 1582
BsmAI GTCTC 3 cut(s) 406, 574, 1372
BsmBI CGTCTC 1 cut(s) 406
BsnI GGCC 1 cut(s) 924
BsoBI CYCGRG 1 cut(s) 1124
Bsp119I TTCGAA 3 cut(s) 177, 220, 1555
Bsp1286I GDGCHC 1 cut(s) 1203
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 4 cut(s) 3, 764, 916, 1639
Bsp1720I GCTNAGC 1 cut(s) 1508
BspACI CCGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 924
BspCNI CTCAG 3 cut(s) 28, 1189, 1582
BspDI ATCGAT 1 cut(s) 225
BspFNI CGCG 1 cut(s) 575
BspHI TCATGA 2 cut(s) 259, 1057
BspMAI CTGCAG 2 cut(s) 460, 1237
BspPI GGATC 2 cut(s) 772, 1647
BspT104I TTCGAA 3 cut(s) 177, 220, 1555
BsrDI GCAATG 1 cut(s) 1642
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 3 cut(s) 420, 1218, 1623
BssECI CCNNGG 1 cut(s) 760
BssMI GATC 4 cut(s) 3, 764, 916, 1639
BssSI CACGAG 1 cut(s) 1488
BssT1I CCWWGG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 1488
Bst4CI ACNGT 2 cut(s) 365, 799
Bst6I CTCTTC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 856
BstBI TTCGAA 3 cut(s) 177, 220, 1555
BstC8I GCNNGC 1 cut(s) 1086
BstDEI CTNAG 5 cut(s) 36, 1197, 1508, 1590, 1691
BstF5I GGATG 5 cut(s) 193, 633, 1241, 1253, 1431
BstFNI CGCG 1 cut(s) 575
BstKTI GATC 4 cut(s) 6, 767, 919, 1642
BstMAI GTCTC 3 cut(s) 406, 574, 1372
BstMBI GATC 4 cut(s) 3, 764, 916, 1639
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 1419
BstSFI CTRYAG 2 cut(s) 456, 1233
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 4 cut(s) 304, 442, 910, 1491
BstX2I RGATCY 1 cut(s) 764
BstYI RGATCY 1 cut(s) 764
Bsu15I ATCGAT 1 cut(s) 225
BsuI GTATCC 2 cut(s) 353, 673
BsuRI GGCC 1 cut(s) 924
BsuTUI ATCGAT 1 cut(s) 225
BtsCI GGATG 5 cut(s) 193, 633, 1241, 1253, 1431
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 3 cut(s) 370, 1119, 1168
Cac8I GCNNGC 1 cut(s) 1086
CaiI CAGNNNCTG 1 cut(s) 1118
CciI TCATGA 2 cut(s) 259, 1057
ClaI ATCGAT 1 cut(s) 225
CseI GACGC 1 cut(s) 748
Csp6I GTAC 5 cut(s) 857, 1306, 1408, 1479, 1531
CviAII CATG 7 cut(s) 196, 260, 309, 806, 1058, 1107, 1416
CviQI GTAC 5 cut(s) 857, 1306, 1408, 1479, 1531
DdeI CTNAG 5 cut(s) 36, 1197, 1508, 1590, 1691
DpnI GATC 4 cut(s) 5, 766, 918, 1641
DpnII GATC 4 cut(s) 3, 764, 916, 1639
EaeI YGGCCR 1 cut(s) 922
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Ecl136II GAGCTC 1 cut(s) 1201
Eco130I CCWWGG 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 1203
Eco53kI GAGCTC 1 cut(s) 1201
Eco57I CTGAAG 2 cut(s) 505, 545
Eco88I CYCGRG 1 cut(s) 1124
EcoICRI GAGCTC 1 cut(s) 1201
EcoRI GAATTC 2 cut(s) 304, 1102
EcoT14I CCWWGG 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 1203
ErhI CCWWGG 1 cut(s) 760
Esp3I CGTCTC 1 cut(s) 406
FaeI CATG 7 cut(s) 199, 263, 312, 809, 1061, 1110, 1419
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 7 cut(s) 195, 259, 308, 805, 1057, 1106, 1415
FauNDI CATATG 1 cut(s) 1261
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 318, 456, 899, 1505
FokI GGATG 5 cut(s) 200, 640, 1228, 1240, 1438
FriOI GRGCYC 1 cut(s) 1203
Fsp4HI GCNGC 4 cut(s) 318, 456, 899, 1505
FspBI CTAG 1 cut(s) 243
GluI GCNGC 4 cut(s) 318, 456, 899, 1505
HaeIII GGCC 1 cut(s) 924
HgaI GACGC 1 cut(s) 748
Hin1II CATG 7 cut(s) 199, 263, 312, 809, 1061, 1110, 1419
HincII GTYRAC 1 cut(s) 1387
HindII GTYRAC 1 cut(s) 1387
HindIII AAGCTT 1 cut(s) 883
HinfI GANTC 4 cut(s) 222, 402, 670, 1193
Hpy166II GTNNAC 2 cut(s) 1387, 1481
Hpy188I TCNGA 5 cut(s) 717, 865, 1051, 1092, 1198
Hpy8I GTNNAC 2 cut(s) 1387, 1481
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 529, 1255, 1616
HpyCH4III ACNGT 2 cut(s) 365, 799
HpyCH4IV ACGT 1 cut(s) 1053
HpyCH4V TGCA 7 cut(s) 45, 458, 545, 875, 1112, 1235, 1647
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 5 cut(s) 36, 1197, 1508, 1590, 1691
HpySE526I ACGT 1 cut(s) 1053
Hsp92II CATG 7 cut(s) 199, 263, 312, 809, 1061, 1110, 1419
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 764, 916, 1639
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 4 cut(s) 304, 442, 910, 1491
LweI GCATC 3 cut(s) 554, 1250, 1416
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 5 cut(s) 365, 466, 993, 1031, 1266
MalI GATC 4 cut(s) 5, 766, 918, 1641
MboI GATC 4 cut(s) 3, 764, 916, 1639
MflI RGATCY 1 cut(s) 764
MhlI GDGCHC 1 cut(s) 1203
MlsI TGGCCA 1 cut(s) 924
MluNI TGGCCA 1 cut(s) 924
MmeI TCCRAC 1 cut(s) 1367
Mox20I TGGCCA 1 cut(s) 924
MroXI GAANNNNTTC 5 cut(s) 120, 173, 333, 753, 1561
MscI TGGCCA 1 cut(s) 924
MseI TTAA 4 cut(s) 636, 1001, 1434, 1472
MslI CAYNNNNRTG 1 cut(s) 1262
Msp20I TGGCCA 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 317
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 1 cut(s) 572
NdeI CATATG 1 cut(s) 1261
NdeII GATC 4 cut(s) 3, 764, 916, 1639
NlaIII CATG 7 cut(s) 199, 263, 312, 809, 1061, 1110, 1419
NmuCI GTSAC 2 cut(s) 365, 1031
NspI RCATGY 1 cut(s) 1419
NspV TTCGAA 3 cut(s) 177, 220, 1555
OliI CACNNNNGTG 1 cut(s) 1262
PaeR7I CTCGAG 1 cut(s) 1124
PagI TCATGA 2 cut(s) 259, 1057
PciI ACATGT 1 cut(s) 1415
PdmI GAANNNNTTC 5 cut(s) 120, 173, 333, 753, 1561
PfeI GAWTC 4 cut(s) 222, 402, 670, 1193
PkrI GCNGC 4 cut(s) 319, 457, 900, 1506
PscI ACATGT 1 cut(s) 1415
Psp124BI GAGCTC 1 cut(s) 1203
PstI CTGCAG 2 cut(s) 460, 1237
PstNI CAGNNNCTG 1 cut(s) 1118
PsuI RGATCY 1 cut(s) 764
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 5 cut(s) 858, 1307, 1409, 1480, 1532
RsaNI GTAC 5 cut(s) 857, 1306, 1408, 1479, 1531
RseI CAYNNNNRTG 1 cut(s) 1262
SacI GAGCTC 1 cut(s) 1203
SaqAI TTAA 4 cut(s) 636, 1001, 1434, 1472
SatI GCNGC 4 cut(s) 318, 456, 899, 1505
Sau3AI GATC 4 cut(s) 3, 764, 916, 1639
SduI GDGCHC 1 cut(s) 1203
SfaNI GCATC 3 cut(s) 554, 1250, 1416
SfcI CTRYAG 2 cut(s) 456, 1233
Sfr274I CTCGAG 1 cut(s) 1124
SfuI TTCGAA 3 cut(s) 177, 220, 1555
SlaI CTCGAG 1 cut(s) 1124
SmiMI CAYNNNNRTG 1 cut(s) 1262
SmlI CTYRAG 3 cut(s) 133, 252, 1124
SmoI CTYRAG 3 cut(s) 133, 252, 1124
SsiI CCGC 1 cut(s) 320
SspI AATATT 2 cut(s) 871, 1354
SspMI CTAG 1 cut(s) 243
SstI GAGCTC 1 cut(s) 1203
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 2 cut(s) 365, 799
TaiI ACGT 1 cut(s) 1056
TaqI TCGA 8 cut(s) 87, 177, 220, 225, 1125, 1320, 1555, 1656
TatI WGTACW 3 cut(s) 856, 1407, 1530
TfiI GAWTC 4 cut(s) 222, 402, 670, 1193
Tru1I TTAA 4 cut(s) 636, 1001, 1434, 1472
Tru9I TTAA 4 cut(s) 636, 1001, 1434, 1472
TscAI CASTG 3 cut(s) 370, 1119, 1168
TseFI GTSAC 2 cut(s) 365, 1031
TseI GCWGC 4 cut(s) 317, 455, 898, 1504
Tsp45I GTSAC 2 cut(s) 365, 1031
TspDTI ATGAA 9 cut(s) 204, 248, 297, 297, 317, 1046, 1074, 1095, 1115
TspGWI ACGGA 2 cut(s) 504, 1565
TspRI CASTG 3 cut(s) 370, 1119, 1168
XapI RAATTY 5 cut(s) 304, 719, 1061, 1102, 1280
XbaI TCTAGA 1 cut(s) 242
XceI RCATGY 1 cut(s) 1419
XhoI CTCGAG 1 cut(s) 1124
XmnI GAANNNNTTC 5 cut(s) 120, 173, 333, 753, 1561
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.