Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Reverse (-)

29651514 .. 29652886

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCAAACAGCAAGTACGAGTATGTCAAGTCATACGGAGTTGAAGATGAGATCTTCTTGCCTAATTTGATTGTTGTTCGAATTGATGGCTGTGATTTTCAAAGGTTTGCAGAAATGCATGAGTTTGAGAAACCAAATGATGAGGTAGCATTGAATTTGATGAATTCAAGCGCAGTTTCTGTGTCGGAGGAGTTTCCAGACATCGTTTTTTCATATGGATTTAGTGACGAGTACAGCTTTGTCTTCAAGAAGACGTCCAAGTTTCACCAGAGGCGTGCCAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

95

Amino Acids

11.17

Weight (kDa)

4.94

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thg1	PF04446	6 - 93	1.4e-32	tRNAHis guanylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
AcsI	RAATTY	2 cut(s)	154, 163
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	2 cut(s)	17, 233
AgsI	TTSAA	5 cut(s)	44, 101, 154, 168, 247
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
AlwNI	CAGNNNCTG	1 cut(s)	179
ApoI	RAATTY	2 cut(s)	154, 163
AspLEI	GCGC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	235, 257
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	280
BglII	AGATCT	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	280
BpiI	GAAGAC	2 cut(s)	235, 257
Bpu14I	TTCGAA	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	79
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstV2I	GAAGAC	2 cut(s)	235, 257
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	179
CfoI	GCGC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	16, 232
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	2 cut(s)	90, 237
CviKI_1	RGCY	2 cut(s)	90, 237
CviQI	GTAC	2 cut(s)	16, 232
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	120
FaeI	CATG	1 cut(s)	122
FaiI	YATR	5 cut(s)	24, 34, 120, 214, 216
FatI	CATG	1 cut(s)	118
FauNDI	CATATG	1 cut(s)	214
GlaI	GCGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	197, 247
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	110, 118
HpySE526I	ACGT	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	3 cut(s)	210, 265, 281
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	4 cut(s)	46, 56, 235, 262
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	4 cut(s)	64, 81, 154, 163
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	136, 181, 264
Mph1103I	ATGCAT	1 cut(s)	120
MseI	TTAA	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	120
NspV	TTCGAA	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	2 cut(s)	17, 233
RsaNI	GTAC	2 cut(s)	16, 232
SaqAI	TTAA	1 cut(s)	286
Sau3AI	GATC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	280
SetI	ASST	5 cut(s)	107, 147, 239, 257, 284
SfuI	TTCGAA	1 cut(s)	79
Sse9I	AATT	4 cut(s)	64, 81, 154, 163
StyD4I	CCNGG	1 cut(s)	278
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	79
TasI	AATT	4 cut(s)	64, 81, 154, 163
TatI	WGTACW	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	176, 201
TspGWI	ACGGA	1 cut(s)	51
XapI	RAATTY	2 cut(s)	154, 163
ZraI	GACGTC	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.