Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Reverse (-)

14868635 .. 14875374

Gene Structure 6740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22971.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGATTCAGTGACGAGTACAGCTTTGTCTTCAAGAAGACGTCCAAGTTTCACCAGAGGCGTGCAAGGTTTTAATATTCAACCTTCTAGAGTTCTTCTCTTATTGTCTCTGATCAAAGTAGAGTCCGTTATAGTATCTTTCTTCAGCTCAGTATATGTGATAAAATGGAGAGAATTCTTCCCTCATAAGGAGTTAAGATACCCTCCCTCTTTCCATTCAAAGGTTATATCCTGTGGTACAATAGAAGTTCTTCAGTCATATCTTTTGTGGAGACAAAATGATTGTCATACAAATAACCTGCGGAATACTTGCCTATGGGAGCTAATTAAAGGTGGAAAGACTGAATGCGAAGCACTAGAGTTACTAGAGGGCACCAGTAAAGAAGAGAAAAACGACCTTCTTTTTGAAAAGTTTGAGATCAATTACCAGAAGTTGGATGAAATGTTTCGTCAAGGATCCTGCATTTTGAAAACTGAGGTGATAGACGTAGTGAAGCACAATGAGAATGGTTCTCCAGTTCGGAGACTTAGGAAAAAGTTAAGAATAGTTCATTCAAAGAATATAGCAAGTATAAGCTTTTGGAACAAGCACAAAATTCTTCTGAATGAGCTCGGTAATTTCGCAAAGGACATTGGAAAAGTTGAACCAGATTTTCTCAGGTCTTTCCAGTTTGATAAAAAATTGATGCCATCGACTTGGATTGTCATTAGAATTGATGGTTGCCATTTCCACAGGTTTTCTGATGTTCATGAATTTGTGAAGCCAAATGATGAGCAGGCTCTCAACCTTATGAATTCATGTGCAGTGGCTGTGGTAAAAGAGTTTCAAGACACAGTGTTTGCCTATGGCGTTAGTGATGAATACAGCTTTGTTATGAAGAAAGACTCTCATTTCTATCAAAGACGAGCAAGTGAAATAGTATCTGTCATGGTGTCACTCTTTACTTCCTTGTACGCAATGAAATGGAAATGTATCTTCCCTGAGAGAGATTTGAAATACCCTCCTTATTTTGATGGCCGTGCTGTGTGCTATCCATCAACTGAAATTCTTCGAGATTATCTGGCTTGGAGACAAGTTGATTGCCATATCAACAATCAATACAATACTTGTTTTTGGCAGCTTGTTAAGTCTGGAAAGAGCAAAAGGGAAGCTCAAAATTTTCTGAAGGGTACTCTAGCAGGTGACAAAGATAAACTGCTTAAGCAATTTGGTACTGACTACAGCGAATTGCCTGTCATGTTCCGCCAAGGTTCATCCATTTTCTGGGACAAGAAAAAAGTTGATGTTGAACATTGCAATATTATTGAACCAAGCTTTTGGTGTGCACACCCAACAATTCTTAACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

450

Amino Acids

52.44

Weight (kDa)

8.93

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thg1	PF04446	39 - 77	6.4e-07	tRNAHis guanylyltransferase
Thg1C	PF14413	83 - 168	1.5e-28	Thg1 C terminal domain
Thg1	PF04446	219 - 304	3.2e-35	tRNAHis guanylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1169
AatII	GACGTC	1 cut(s)	43
Acc36I	ACCTGC	2 cut(s)	306, 1169
AccB1I	GGYRCC	1 cut(s)	371
AccB7I	CCANNNNNTGG	2 cut(s)	433, 1263
AciI	CCGC	2 cut(s)	301, 1243
AclWI	GGATC	2 cut(s)	450, 463
AcoI	YGGCCR	1 cut(s)	1015
AcsI	RAATTY	6 cut(s)	173, 594, 752, 793, 1044, 1156
AcuI	CTGAAG	3 cut(s)	127, 236, 1184
AcyI	GRCGYC	1 cut(s)	40
AfaI	GTAC	5 cut(s)	19, 238, 953, 1171, 1213
AfiI	CCNNNNNNNGG	4 cut(s)	187, 220, 433, 1263
AflII	CTTAAG	1 cut(s)	1199
AluBI	AGCT	9 cut(s)	23, 147, 322, 576, 610, 867, 1120, 1151, 1314
AluI	AGCT	9 cut(s)	23, 147, 322, 576, 610, 867, 1120, 1151, 1314
Alw21I	GWGCWC	2 cut(s)	612, 1327
Alw26I	GTCTC	4 cut(s)	111, 265, 517, 1063
Alw44I	GTGCAC	1 cut(s)	1323
AlwI	GGATC	2 cut(s)	450, 463
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	1 cut(s)	1015
ApaLI	GTGCAC	1 cut(s)	1323
ApeKI	GCWGC	1 cut(s)	1117
ApoI	RAATTY	6 cut(s)	173, 594, 752, 793, 1044, 1156
ArsI	GACNNNNNNTTYG	8 cut(s)	268, 300, 386, 418, 821, 853, 1218, 1250
Asp700I	GAANNNNTTC	3 cut(s)	249, 444, 1047
AsuHPI	GGTGA	3 cut(s)	43, 490, 1193
BaeGI	GKGCMC	2 cut(s)	374, 1327
BamHI	GGATCC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	612
BbsI	GAAGAC	2 cut(s)	21, 43
Bbv12I	GWGCWC	2 cut(s)	612, 1327
BbvI	GCAGC	1 cut(s)	1129
BccI	CCATC	4 cut(s)	697, 710, 1007, 1042
BceAI	ACGGC	1 cut(s)	1002
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	4 cut(s)	111, 265, 517, 1063
BfaI	CTAG	4 cut(s)	87, 356, 365, 1175
BfmI	CTRYAG	1 cut(s)	1219
BfrI	CTTAAG	1 cut(s)	1199
BfuAI	ACCTGC	2 cut(s)	306, 1169
BisI	GCNGC	1 cut(s)	1118
BlsI	GCNGC	1 cut(s)	1119
BmiI	GGNNCC	2 cut(s)	373, 457
BmsI	GCATC	1 cut(s)	675
BpiI	GAAGAC	2 cut(s)	21, 43
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpmI	CTGGAG	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	1246
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 220, 433, 1263
Bse1I	ACTGG	3 cut(s)	375, 515, 667
Bse3DI	GCAATG	2 cut(s)	963, 1291
BseDI	CCNNGG	1 cut(s)	1246
BseGI	GGATG	2 cut(s)	442, 1253
BseLI	CCNNNNNNNGG	4 cut(s)	187, 220, 433, 1263
BseMI	GCAATG	2 cut(s)	963, 1291
BseMII	CTCAG	4 cut(s)	162, 465, 670, 972
BseNI	ACTGG	3 cut(s)	375, 515, 667
BseSI	GKGCMC	2 cut(s)	374, 1327
BseXI	GCAGC	1 cut(s)	1129
BsgI	GTGCAG	1 cut(s)	822
BshFI	GGCC	1 cut(s)	1017
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	2 cut(s)	612, 1327
BslFI	GGGAC	1 cut(s)	1280
BslI	CCNNNNNNNGG	4 cut(s)	187, 220, 433, 1263
BsmAI	GTCTC	4 cut(s)	111, 265, 517, 1063
BsmFI	GGGAC	1 cut(s)	1280
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	1017
Bsp1286I	GDGCHC	3 cut(s)	374, 612, 1327
Bsp143I	GATC	3 cut(s)	111, 417, 455
BspACI	CCGC	2 cut(s)	301, 1243
BspANI	GGCC	1 cut(s)	1017
BspCNI	CTCAG	4 cut(s)	161, 466, 669, 973
BspHI	TCATGA	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	373, 457
BspMI	ACCTGC	2 cut(s)	306, 1169
BspPI	GGATC	2 cut(s)	450, 463
BspT107I	GGYRCC	1 cut(s)	371
BspTI	CTTAAG	1 cut(s)	1199
BsrDI	GCAATG	2 cut(s)	963, 1291
BsrI	ACTGG	3 cut(s)	375, 515, 667
BssECI	CCNNGG	1 cut(s)	1246
BssMI	GATC	3 cut(s)	111, 417, 455
BssNI	GRCGYC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	1246
Bst4CI	ACNGT	1 cut(s)	835
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	40
BstAFI	CTTAAG	1 cut(s)	1199
BstC8I	GCNNGC	2 cut(s)	62, 777
BstDEI	CTNAG	5 cut(s)	148, 474, 527, 656, 981
BstF5I	GGATG	2 cut(s)	442, 1253
BstKTI	GATC	3 cut(s)	114, 420, 458
BstMAI	GTCTC	4 cut(s)	111, 265, 517, 1063
BstMBI	GATC	3 cut(s)	111, 417, 455
BstSFI	CTRYAG	1 cut(s)	1219
BstSLI	GKGCMC	2 cut(s)	374, 1327
BstV1I	GCAGC	1 cut(s)	1129
BstV2I	GAAGAC	2 cut(s)	21, 43
BstX2I	RGATCY	1 cut(s)	455
BstXI	CCANNNNNNTGG	2 cut(s)	696, 1317
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	1017
BtsCI	GGATG	2 cut(s)	442, 1253
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	3 cut(s)	15, 810, 840
BveI	ACCTGC	2 cut(s)	306, 1169
Cac8I	GCNNGC	2 cut(s)	62, 777
CaiI	CAGNNNCTG	1 cut(s)	809
CciI	TCATGA	1 cut(s)	748
Csp6I	GTAC	5 cut(s)	18, 237, 952, 1170, 1212
CviAII	CATG	4 cut(s)	749, 798, 928, 1237
CviQI	GTAC	5 cut(s)	18, 237, 952, 1170, 1212
DdeI	CTNAG	5 cut(s)	148, 474, 527, 656, 981
DpnI	GATC	3 cut(s)	113, 419, 457
DpnII	GATC	3 cut(s)	111, 417, 455
EaeI	YGGCCR	1 cut(s)	1015
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	1232
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	1246
Eco24I	GRGCYC	1 cut(s)	612
Eco53kI	GAGCTC	1 cut(s)	610
Eco57I	CTGAAG	3 cut(s)	127, 236, 1184
EcoICRI	GAGCTC	1 cut(s)	610
EcoRI	GAATTC	2 cut(s)	173, 793
EcoT14I	CCWWGG	1 cut(s)	1246
EcoT38I	GRGCYC	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	1246
FaeI	CATG	4 cut(s)	752, 801, 931, 1240
FaqI	GGGAC	1 cut(s)	1280
FatI	CATG	4 cut(s)	748, 797, 927, 1236
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	1118
FokI	GGATG	2 cut(s)	449, 1240
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	1 cut(s)	1118
FspBI	CTAG	4 cut(s)	87, 356, 365, 1175
GluI	GCNGC	1 cut(s)	1118
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	1017
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	752, 801, 931, 1240
HindIII	AAGCTT	2 cut(s)	574, 1312
HinfI	GANTC	3 cut(s)	5, 122, 884
HphI	GGTGA	3 cut(s)	43, 490, 1193
Hpy166II	GTNNAC	1 cut(s)	1325
Hpy188I	TCNGA	5 cut(s)	111, 522, 603, 742, 1164
Hpy188III	TCNNGA	6 cut(s)	33, 87, 749, 827, 1052, 1131
Hpy8I	GTNNAC	1 cut(s)	1325
HpyAV	CCTTC	3 cut(s)	93, 407, 1159
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4IV	ACGT	2 cut(s)	40, 486
HpyCH4V	TGCA	5 cut(s)	64, 462, 803, 1296, 1325
HpyF3I	CTNAG	5 cut(s)	148, 474, 527, 656, 981
HpySE526I	ACGT	2 cut(s)	40, 486
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	4 cut(s)	752, 801, 931, 1240
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	111, 417, 455
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	1 cut(s)	1129
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	4 cut(s)	87, 356, 365, 1175
MaeII	ACGT	2 cut(s)	40, 486
MaeIII	GTNAC	4 cut(s)	10, 360, 933, 1181
MalI	GATC	3 cut(s)	113, 419, 457
MboI	GATC	3 cut(s)	111, 417, 455
MflI	RGATCY	1 cut(s)	455
MhlI	GDGCHC	3 cut(s)	374, 612, 1327
MlyI	GAGTC	2 cut(s)	131, 878
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	7 cut(s)	50, 192, 213, 217, 361, 469, 1011
MroXI	GAANNNNTTC	3 cut(s)	249, 444, 1047
MseI	TTAA	7 cut(s)	72, 194, 327, 539, 1125, 1200, 1341
MspCI	CTTAAG	1 cut(s)	1199
Mva1269I	GAATGC	1 cut(s)	350
NdeII	GATC	3 cut(s)	111, 417, 455
NlaIII	CATG	4 cut(s)	752, 801, 931, 1240
NlaIV	GGNNCC	2 cut(s)	373, 457
NmuCI	GTSAC	3 cut(s)	10, 933, 1181
PagI	TCATGA	1 cut(s)	748
PaqCI	CACCTGC	1 cut(s)	1169
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	3 cut(s)	249, 444, 1047
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	2 cut(s)	433, 1263
PkrI	GCNGC	1 cut(s)	1119
PleI	GAGTC	2 cut(s)	130, 878
PpsI	GAGTC	2 cut(s)	130, 878
Psp124BI	GAGCTC	1 cut(s)	612
PspN4I	GGNNCC	2 cut(s)	373, 457
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	5 cut(s)	19, 238, 953, 1171, 1213
RsaNI	GTAC	5 cut(s)	18, 237, 952, 1170, 1212
SacI	GAGCTC	1 cut(s)	612
SaqAI	TTAA	7 cut(s)	72, 194, 327, 539, 1125, 1200, 1341
SatI	GCNGC	1 cut(s)	1118
Sau3AI	GATC	3 cut(s)	111, 417, 455
SchI	GAGTC	2 cut(s)	131, 878
SduI	GDGCHC	3 cut(s)	374, 612, 1327
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	1 cut(s)	1219
SmlI	CTYRAG	1 cut(s)	1199
SmoI	CTYRAG	1 cut(s)	1199
SsiI	CCGC	2 cut(s)	301, 1243
SspI	AATATT	2 cut(s)	76, 1300
SspMI	CTAG	4 cut(s)	87, 356, 365, 1175
SstI	GAGCTC	1 cut(s)	612
StyI	CCWWGG	1 cut(s)	1246
TaaI	ACNGT	1 cut(s)	835
TaiI	ACGT	2 cut(s)	43, 489
TaqI	TCGA	2 cut(s)	692, 1051
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	7 cut(s)	72, 194, 327, 539, 1125, 1200, 1341
Tru9I	TTAA	7 cut(s)	72, 194, 327, 539, 1125, 1200, 1341
TscAI	CASTG	3 cut(s)	15, 810, 840
TseFI	GTSAC	3 cut(s)	10, 933, 1181
TseI	GCWGC	1 cut(s)	1117
Tsp45I	GTSAC	3 cut(s)	10, 933, 1181
TspGWI	ACGGA	1 cut(s)	115
TspRI	CASTG	3 cut(s)	15, 810, 840
Van91I	CCANNNNNTGG	2 cut(s)	433, 1263
Vha464I	CTTAAG	1 cut(s)	1199
VneI	GTGCAC	1 cut(s)	1323
XapI	RAATTY	6 cut(s)	173, 594, 752, 793, 1044, 1156
XbaI	TCTAGA	1 cut(s)	86
XmnI	GAANNNNTTC	3 cut(s)	249, 444, 1047
XspI	CTAG	4 cut(s)	87, 356, 365, 1175
ZraI	GACGTC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.