Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003454.1

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Forward (+)

76690 .. 79903

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003454.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgctgagacctccatcctacattattcaggtgattgacgtagtaaagcacaatgagaatggctctcctgtccggagacttaggaaaaagttaagaagaatagtccattcaaagaatatagtggggataagcttttggaacaagcacaaatgtcttcggaatgagctcggtagcttctctaaggacattgcaaaagttgaaccagattttctcaaatccttccagtttgaaaagagattgatgccatcgacttggattgtcattagaattgatggttgccatttccacaggttttctgatgttcatgaatttgtgaagccaaatgatgagcaggctctcaagcttatgaattcatgtgcagtggctgtggtaaaagagtttcaagacacagtgtttgcctatggcgtcagtgatgaatacagtaaaatagtatctgtcatggtgtcactctttacgtccatgtacacaatgaaatggaaagatttcttccctgagagagatttgaagtaccctccttattttgatggccgcgctgtatgctatccatcatctgaaattcttcgagattatctggcgtggagacaagttgattgccatatcaacaatcaatacaatacttgtttttggcagcttgttaagtccggaaagagcaaaagtgaagcccagaattttctgaagggtactctagcaggtgacaaagataaactgttcaagcaattcggtattgactacagcaaattgcctgtcatgttccgccaaggttcctccactttctgggacaagggagacattataatgataaacaacaacaagccatctgatgaaaattctcagaacaaagttcttatagagcactgtaatattatcgaatctagcttttggtgcgcacacccaacaattcttaatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

303

Amino Acids

35.35

Weight (kDa)

9.12

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
AarI	CACCTGC	1 cut(s)	680
Acc16I	TGCGCA	1 cut(s)	886
Acc36I	ACCTGC	1 cut(s)	680
AccB7I	CCANNNNNTGG	1 cut(s)	774
AccII	CGCG	1 cut(s)	531
AccIII	TCCGGA	2 cut(s)	72, 641
AciI	CCGC	2 cut(s)	529, 754
AcoI	YGGCCR	1 cut(s)	526
AcsI	RAATTY	5 cut(s)	308, 349, 555, 667, 826
AcuI	CTGAAG	1 cut(s)	695
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	3 cut(s)	464, 509, 682
AfiI	CCNNNNNNNGG	1 cut(s)	774
AgsI	TTSAA	6 cut(s)	111, 200, 230, 383, 505, 712
AluBI	AGCT	6 cut(s)	132, 166, 174, 343, 631, 876
AluI	AGCT	6 cut(s)	132, 166, 174, 343, 631, 876
Alw21I	GWGCWC	2 cut(s)	168, 855
Alw26I	GTCTC	3 cut(s)	70, 574, 780
AlwNI	CAGNNNCTG	1 cut(s)	365
Aor13HI	TCCGGA	2 cut(s)	72, 641
AoxI	GGCC	1 cut(s)	526
ApeKI	GCWGC	1 cut(s)	628
ApoI	RAATTY	5 cut(s)	308, 349, 555, 667, 826
ArsI	GACNNNNNNTTYG	4 cut(s)	377, 409, 729, 761
Asp700I	GAANNNNTTC	2 cut(s)	482, 558
AspLEI	GCGC	2 cut(s)	533, 887
AsuHPI	GGTGA	2 cut(s)	43, 704
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	168, 855
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	6 cut(s)	22, 253, 266, 518, 553, 823
BcoDI	GTCTC	3 cut(s)	70, 574, 780
BfaI	CTAG	2 cut(s)	686, 873
BfmI	CTRYAG	1 cut(s)	730
BfuAI	ACCTGC	1 cut(s)	680
BisI	GCNGC	2 cut(s)	529, 629
BlsI	GCNGC	2 cut(s)	530, 630
BmiI	GGNNCC	1 cut(s)	763
BmsI	GCATC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	146
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpuEI	CTTGAG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	757
BsaWI	WCCGGW	2 cut(s)	72, 641
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	186
BseAI	TCCGGA	2 cut(s)	72, 641
BseDI	CCNNGG	1 cut(s)	757
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	483, 845
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	528
BsiHKAI	GWGCWC	2 cut(s)	168, 855
BsiSI	CCGG	2 cut(s)	73, 642
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	3 cut(s)	70, 574, 780
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	1 cut(s)	528
Bsp1286I	GDGCHC	2 cut(s)	168, 855
Bsp13I	TCCGGA	2 cut(s)	72, 641
Bsp1407I	TGTACA	1 cut(s)	462
BspACI	CCGC	2 cut(s)	529, 754
BspANI	GGCC	1 cut(s)	528
BspCNI	CTCAG	2 cut(s)	484, 844
BspEI	TCCGGA	2 cut(s)	72, 641
BspFNI	CGCG	1 cut(s)	531
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	763
BspMI	ACCTGC	1 cut(s)	680
BsrDI	GCAATG	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	757
BssNI	GRCGYC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	757
Bst4CI	ACNGT	4 cut(s)	391, 422, 708, 857
BstACI	GRCGYC	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	5 cut(s)	5, 80, 180, 492, 831
BstF5I	GGATG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	2 cut(s)	533, 887
BstMAI	GTCTC	3 cut(s)	70, 574, 780
BstMWI	GCNNNNNNNGC	2 cut(s)	537, 882
BstSFI	CTRYAG	1 cut(s)	730
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	146
BstXI	CCANNNNNNTGG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	4 cut(s)	366, 396, 415, 853
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	365
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	2 cut(s)	533, 887
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	3 cut(s)	463, 508, 681
CviAII	CATG	5 cut(s)	305, 354, 439, 460, 748
CviQI	GTAC	3 cut(s)	463, 508, 681
DdeI	CTNAG	5 cut(s)	5, 80, 180, 492, 831
EaeI	YGGCCR	1 cut(s)	526
EciI	GGCGGA	1 cut(s)	743
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	757
EcoT22I	ATGCAT	1 cut(s)	910
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	757
FaeI	CATG	5 cut(s)	308, 357, 442, 463, 751
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	5 cut(s)	304, 353, 438, 459, 747
Fnu4HI	GCNGC	2 cut(s)	529, 629
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	529, 629
FspAI	RTGCGCAY	1 cut(s)	886
FspBI	CTAG	2 cut(s)	686, 873
FspI	TGCGCA	1 cut(s)	886
GlaI	GCGC	2 cut(s)	532, 886
GluI	GCNGC	2 cut(s)	529, 629
HaeIII	GGCC	1 cut(s)	528
HapII	CCGG	2 cut(s)	73, 642
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	2 cut(s)	533, 887
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	5 cut(s)	308, 357, 442, 463, 751
Hin6I	GCGC	2 cut(s)	531, 885
HinP1I	GCGC	2 cut(s)	531, 885
HindIII	AAGCTT	2 cut(s)	130, 341
HinfI	GANTC	1 cut(s)	869
HpaII	CCGG	2 cut(s)	73, 642
HphI	GGTGA	2 cut(s)	43, 704
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	6 cut(s)	159, 298, 553, 675, 820, 834
Hpy188III	TCNNGA	5 cut(s)	73, 305, 383, 563, 642
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	229, 670
HpyCH4III	ACNGT	4 cut(s)	391, 422, 708, 857
HpyCH4IV	ACGT	2 cut(s)	39, 455
HpyCH4V	TGCA	3 cut(s)	191, 359, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	537, 882
HpyF3I	CTNAG	5 cut(s)	5, 80, 180, 492, 831
HpySE526I	ACGT	2 cut(s)	39, 455
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	308, 357, 442, 463, 751
HspAI	GCGC	2 cut(s)	531, 885
Kpn2I	TCCGGA	2 cut(s)	72, 641
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	686, 873
MaeII	ACGT	2 cut(s)	39, 455
MaeIII	GTNAC	2 cut(s)	444, 692
MboII	GAAGA	4 cut(s)	108, 146, 478, 551
MhlI	GDGCHC	2 cut(s)	168, 855
MluCI	AATT	9 cut(s)	267, 308, 349, 555, 667, 716, 737, 826, 897
MnlI	CCTC	3 cut(s)	21, 522, 775
Mph1103I	ATGCAT	1 cut(s)	910
MroI	TCCGGA	2 cut(s)	72, 641
MroXI	GAANNNNTTC	2 cut(s)	482, 558
MseI	TTAA	3 cut(s)	92, 636, 903
MslI	CAYNNNNRTG	1 cut(s)	794
MspI	CCGG	2 cut(s)	73, 642
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	537, 882
NlaIII	CATG	5 cut(s)	308, 357, 442, 463, 751
NlaIV	GGNNCC	1 cut(s)	763
NmuCI	GTSAC	2 cut(s)	444, 692
NsbI	TGCGCA	1 cut(s)	886
NsiI	ATGCAT	1 cut(s)	910
PagI	TCATGA	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	680
PdmI	GAANNNNTTC	2 cut(s)	482, 558
PfeI	GAWTC	1 cut(s)	869
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	2 cut(s)	530, 630
PsiI	TTATAA	1 cut(s)	794
Psp124BI	GAGCTC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	365
RsaI	GTAC	3 cut(s)	464, 509, 682
RsaNI	GTAC	3 cut(s)	463, 508, 681
RseI	CAYNNNNRTG	1 cut(s)	794
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	92, 636, 903
SatI	GCNGC	2 cut(s)	529, 629
SduI	GDGCHC	2 cut(s)	168, 855
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	9 cut(s)	267, 308, 349, 555, 667, 716, 737, 826, 897
SsiI	CCGC	2 cut(s)	529, 754
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	2 cut(s)	686, 873
SstI	GAGCTC	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	757
TaaI	ACNGT	4 cut(s)	391, 422, 708, 857
TaiI	ACGT	2 cut(s)	42, 458
TaqI	TCGA	3 cut(s)	248, 562, 867
TasI	AATT	9 cut(s)	267, 308, 349, 555, 667, 716, 737, 826, 897
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	869
Tru1I	TTAA	3 cut(s)	92, 636, 903
Tru9I	TTAA	3 cut(s)	92, 636, 903
TscAI	CASTG	4 cut(s)	366, 396, 415, 860
TseFI	GTSAC	2 cut(s)	444, 692
TseI	GCWGC	1 cut(s)	628
Tsp45I	GTSAC	2 cut(s)	444, 692
TspDTI	ATGAA	7 cut(s)	293, 321, 342, 362, 429, 485, 837
TspRI	CASTG	4 cut(s)	366, 396, 415, 860
Van91I	CCANNNNNTGG	1 cut(s)	774
XapI	RAATTY	5 cut(s)	308, 349, 555, 667, 826
XmnI	GAANNNNTTC	2 cut(s)	482, 558
XspI	CTAG	2 cut(s)	686, 873
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.