Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Reverse (-)

2135057 .. 2138138

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCAAACAGTAAATACGAGTATGTCAAGTCGTATGAAGTAGACGACAAGGTTTTCCTGCCCAATTTGATCATTGTTCGAATTGATGGTTGTGATTTTCAAAGGTTTTCCCAAGTTCATGAATTTCAGAAACCAAACGATGAGGAAGCTCTGAATTTGATGAACTCATGCGCAATTTCTGTGTCAGAGGCGTTTCCAGACATAGTGTTTTCATATGGCTTCTGTGATGAATACAACTTTGTCTTCAAGAAGACGTCCAAGTTTTACCAAAGGCGTGCCAGCAAAGTAGGGACCATTATTGTATCTTTCTTCTCTTCTGTATATGTCATGAAATGGAGACAATTCTTCCCTCATAAGGAGTTAATGTACCCCCCCCCTTCATTTCATGCACGTGTTATACGCTATGCATCAGAAGAAGTCCTTCAGTTATATCTTTTTTGGAGACAAAATAATTGTCACACAAATAACCTGCATAACACCTGCCTATGGGAGCTAATTAAATCTGGAAAGACCGAAAGCGAAGCAGTGGGCTTACTAAAGGACAGCAGCAAGGAAGAAAAAAATGACCTTCTTTTTAGAAAGTGTGGTATCAACTACCAAAAATTGCATCCAATGTTTCGACAAGGATCCTGCATTTTGAAAACAGAGGTGTTTGAAGTTGTGAAGCACAATGACAATGGTTCTCCTGTCAGGAGACTTAGGAGAAAGTCGAGCATGGTCCATTCAAAGAATATAGCCGACAGAAGGTTTTGGAACAAGCACGCCCATCTTCAGAAGGAACTCGGTAGCTTTACCAAGGATATTGGAAAAGTTGAACCTGATTATATTAGGTCCTTCCAGTTTGAAGACAAACTGATCCCATCAACATGGGTTGTAGTTAGGATTGATGGTTGCCATTTCCACAGAGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

305

Amino Acids

35.95

Weight (kDa)

9.12

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	488
AatII	GACGTC	1 cut(s)	257
Acc16I	TGCGCA	1 cut(s)	172
Acc36I	ACCTGC	2 cut(s)	477, 488
AccI	GTMKAC	1 cut(s)	42
AclWI	GGATC	3 cut(s)	621, 634, 850
AcsI	RAATTY	2 cut(s)	122, 154
AcuI	CTGAAG	2 cut(s)	407, 755
AcvI	CACGTG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	3 cut(s)	355, 486, 744
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	7 cut(s)	101, 247, 640, 656, 726, 815, 845
AluBI	AGCT	3 cut(s)	149, 493, 789
AluI	AGCT	3 cut(s)	149, 493, 789
Alw26I	GTCTC	3 cut(s)	331, 436, 688
AlwI	GGATC	3 cut(s)	621, 634, 850
ApeKI	GCWGC	1 cut(s)	546
ApoI	RAATTY	2 cut(s)	122, 154
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
Asp700I	GAANNNNTTC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	3 cut(s)	291, 718, 831
AsuII	TTCGAA	1 cut(s)	79
AvaII	GGWCC	3 cut(s)	291, 718, 831
BamHI	GGATCC	1 cut(s)	626
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	3 cut(s)	235, 257, 852
BbvI	GCAGC	1 cut(s)	558
BccI	CCATC	4 cut(s)	80, 774, 868, 881
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	3 cut(s)	331, 436, 688
BfuAI	ACCTGC	2 cut(s)	477, 488
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
Bme18I	GGWCC	3 cut(s)	291, 718, 831
BmgT120I	GGNCC	3 cut(s)	291, 718, 831
BmiI	GGNNCC	2 cut(s)	292, 628
BmsI	GCATC	2 cut(s)	416, 616
BpiI	GAAGAC	3 cut(s)	235, 257, 852
Bpu14I	TTCGAA	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	795
BsaXI	ACNNNNNCTCC	2 cut(s)	350, 380
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 486, 744
Bse1I	ACTGG	1 cut(s)	838
BseDI	CCNNGG	1 cut(s)	795
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	3 cut(s)	355, 486, 744
BseNI	ACTGG	1 cut(s)	838
BseXI	GCAGC	1 cut(s)	558
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	355, 486, 744
BsmAI	GTCTC	3 cut(s)	331, 436, 688
BsmFI	GGGAC	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	69, 626, 855
BspHI	TCATGA	2 cut(s)	118, 327
BspLI	GGNNCC	2 cut(s)	292, 628
BspMI	ACCTGC	2 cut(s)	477, 488
BspPI	GGATC	3 cut(s)	621, 634, 850
BspT104I	TTCGAA	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	1 cut(s)	795
BssMI	GATC	3 cut(s)	69, 626, 855
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	795
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	79
BstC8I	GCNNGC	3 cut(s)	276, 280, 762
BstDEI	CTNAG	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	72, 629, 858
BstMAI	GTCTC	3 cut(s)	331, 436, 688
BstMBI	GATC	3 cut(s)	69, 626, 855
BstV1I	GCAGC	1 cut(s)	558
BstV2I	GAAGAC	3 cut(s)	235, 257, 852
BstX2I	RGATCY	1 cut(s)	626
BstXI	CCANNNNNNTGG	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	626
BtsCI	GGATG	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	2 cut(s)	477, 488
Cac8I	GCNNGC	3 cut(s)	276, 280, 762
CciI	TCATGA	2 cut(s)	118, 327
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	291, 718, 831
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	6 cut(s)	119, 168, 328, 386, 715, 867
CviJI	RGCY	6 cut(s)	149, 219, 493, 531, 737, 789
CviKI_1	RGCY	6 cut(s)	149, 219, 493, 531, 737, 789
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	1 cut(s)	698
DpnI	GATC	3 cut(s)	71, 628, 857
DpnII	GATC	3 cut(s)	69, 626, 855
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	795
Eco47I	GGWCC	3 cut(s)	291, 718, 831
Eco57I	CTGAAG	2 cut(s)	407, 755
Eco72I	CACGTG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	795
EcoT22I	ATGCAT	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	795
FaeI	CATG	6 cut(s)	122, 171, 331, 389, 718, 870
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	6 cut(s)	118, 167, 327, 385, 714, 866
FauNDI	CATATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	547
FokI	GGATG	1 cut(s)	594
Fsp4HI	GCNGC	1 cut(s)	547
FspI	TGCGCA	1 cut(s)	172
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	6 cut(s)	122, 171, 331, 389, 718, 870
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	6 cut(s)	129, 153, 187, 412, 774, 914
Hpy188III	TCNNGA	6 cut(s)	119, 197, 247, 328, 504, 691
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	6 cut(s)	387, 431, 578, 738, 769, 844
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	254, 391
HpyCH4V	TGCA	5 cut(s)	389, 407, 472, 607, 633
HpyF3I	CTNAG	1 cut(s)	698
HpySE526I	ACGT	2 cut(s)	254, 391
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	6 cut(s)	122, 171, 331, 389, 718, 870
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	69, 626, 855
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	1 cut(s)	558
LweI	GCATC	2 cut(s)	416, 616
MaeII	ACGT	2 cut(s)	254, 391
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	3 cut(s)	71, 628, 857
MboI	GATC	3 cut(s)	69, 626, 855
MboII	GAAGA	9 cut(s)	235, 262, 301, 306, 337, 425, 566, 761, 857
MflI	RGATCY	1 cut(s)	626
MluCI	AATT	9 cut(s)	64, 81, 122, 154, 174, 341, 451, 495, 602
MnlI	CCTC	4 cut(s)	136, 181, 360, 640
Mph1103I	ATGCAT	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	362, 498
MslI	CAYNNNNRTG	2 cut(s)	390, 865
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	3 cut(s)	69, 626, 855
NlaIII	CATG	6 cut(s)	122, 171, 331, 389, 718, 870
NlaIV	GGNNCC	2 cut(s)	292, 628
NmuCI	GTSAC	1 cut(s)	455
NsbI	TGCGCA	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	409
NspV	TTCGAA	1 cut(s)	79
PagI	TCATGA	2 cut(s)	118, 327
PaqCI	CACCTGC	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	548
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	831
Psp5II	RGGWCCY	1 cut(s)	831
PspCI	CACGTG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	292, 628
PspPI	GGNCC	3 cut(s)	291, 718, 831
PspPPI	RGGWCCY	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	626
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	2 cut(s)	390, 865
SaqAI	TTAA	2 cut(s)	362, 498
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	3 cut(s)	69, 626, 855
Sau96I	GGNCC	3 cut(s)	291, 718, 831
SfaNI	GCATC	2 cut(s)	416, 616
SfuI	TTCGAA	1 cut(s)	79
SinI	GGWCC	3 cut(s)	291, 718, 831
SmiMI	CAYNNNNRTG	2 cut(s)	390, 865
Sse9I	AATT	9 cut(s)	64, 81, 122, 154, 174, 341, 451, 495, 602
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	2 cut(s)	257, 394
TaqI	TCGA	3 cut(s)	79, 619, 710
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	9 cut(s)	64, 81, 122, 154, 174, 341, 451, 495, 602
Tru1I	TTAA	2 cut(s)	362, 498
Tru9I	TTAA	2 cut(s)	362, 498
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	9 cut(s)	51, 107, 135, 176, 201, 243, 344, 369, 374
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	3 cut(s)	291, 718, 831
XapI	RAATTY	2 cut(s)	122, 154
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.