Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014203.1

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Forward (+)

21252 .. 22211

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014203.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgttccgtcaaggatcctgcattttgaaaactgaggtgatggacattgtgaagcacaatgagaatggttctcctgtggagaggcttaggaaaaagttaagaatacttcattcgaagaatatagctgggcgaagtttttggaacgagcatgcgagtcttaggaatgagctcggtatatttacaagggacattggaaaagttgaacccgattatctcaggtccttccagtttgggaacaaattgatgccatcaacgtgggttgttattagaatcgatggttgccactttcacaggtttactgaagttcatgagtttgtgaagccgaatgatgagcaagctctcaaccttatgaattcatgtgccgttgctgtggtgaaagaatttccagacattattttctcctatggcgtgagcgatgaatacagctttgttttcaagaagaattctcagttctgtcaaaggcaagcaagtgagatggtatctgtcattgtgtcattcttcacttcctcatatgtgacgaagtggagtggtttcttccctcagaaagcgttgaagtgccctccttattttgatgggcgtgctgtatgctatccgtcatctgatattcttcgagattatctggcatggaggcaagttgactgccatatcaacaatcaatacaatacttgtttttgggagcttgttatgtctggaaaaggcaaaagtgaagctcagaattttcttaagggtactcaagcaggcgacaaagatagactgcttaagcaatttggtattgactacaacaagttacaagttatgtttcgccaaggttcatccattttctgggataagggagatgttataccgatgaacaagaatgaggcgtctgttgaaaagtctggggaaaaagttgttgtagaacattgtaatattattgagccaagtttttggcacgcacacccaactattctgcatgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

319

Amino Acids

36.84

Weight (kDa)

8.63

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	822
AclWI	GGATC	2 cut(s)	9, 22
AcsI	RAATTY	4 cut(s)	352, 380, 442, 715
AcuI	CTGAAG	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	863
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	1 cut(s)	822
AflII	CTTAAG	2 cut(s)	722, 758
AgsI	TTSAA	5 cut(s)	28, 203, 436, 553, 872
AluBI	AGCT	6 cut(s)	125, 169, 338, 426, 679, 710
AluI	AGCT	6 cut(s)	125, 169, 338, 426, 679, 710
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	9, 22
ApoI	RAATTY	4 cut(s)	352, 380, 442, 715
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	49, 385
AsuII	TTCGAA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	5 cut(s)	34, 256, 269, 469, 566
BceAI	ACGGC	1 cut(s)	347
BfrI	CTTAAG	2 cut(s)	722, 758
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	717
Bsa29I	ATCGAT	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	863
BsaJI	CCNNGG	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	1 cut(s)	822
Bse1I	ACTGG	1 cut(s)	226
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	805
BseGI	GGATG	1 cut(s)	812
BseLI	CCNNNNNNNGG	1 cut(s)	822
BseMII	CTCAG	5 cut(s)	24, 229, 461, 554, 725
BseNI	ACTGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	560
BseYI	CCCAGC	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	822
BsmFI	GGGAC	1 cut(s)	200
Bsp119I	TTCGAA	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	171, 560
Bsp143I	GATC	1 cut(s)	14
BspCNI	CTCAG	5 cut(s)	25, 228, 460, 553, 724
BspDI	ATCGAT	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	9, 22
BspT104I	TTCGAA	1 cut(s)	113
BspTI	CTTAAG	2 cut(s)	722, 758
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	805
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	863
BssT1I	CCWWGG	1 cut(s)	805
BstACI	GRCGYC	1 cut(s)	863
BstAFI	CTTAAG	2 cut(s)	722, 758
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	6 cut(s)	150, 336, 465, 579, 739, 933
BstDEI	CTNAG	7 cut(s)	33, 86, 158, 215, 447, 540, 711
BstF5I	GGATG	1 cut(s)	812
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	560
BstX2I	RGATCY	1 cut(s)	14
BstXI	CCANNNNNNTGG	2 cut(s)	255, 927
BstYI	RGATCY	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	812
Cac8I	GCNNGC	6 cut(s)	150, 336, 465, 579, 739, 933
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	219
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	852
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	5 cut(s)	149, 308, 357, 624, 953
CviJI	RGCY	9 cut(s)	85, 125, 169, 322, 338, 426, 679, 710, 919
CviKI_1	RGCY	9 cut(s)	85, 125, 169, 322, 338, 426, 679, 710, 919
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	7 cut(s)	33, 86, 158, 215, 447, 540, 711
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRI	GAATTC	2 cut(s)	352, 442
EcoT14I	CCWWGG	1 cut(s)	805
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	805
FaeI	CATG	5 cut(s)	152, 311, 360, 627, 956
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	5 cut(s)	148, 307, 356, 623, 952
FauNDI	CATATG	1 cut(s)	511
FokI	GGATG	1 cut(s)	799
FriOI	GRGCYC	1 cut(s)	171
GsaI	CCCAGC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	852
Hin1I	GRCGYC	1 cut(s)	863
Hin1II	CATG	5 cut(s)	152, 311, 360, 627, 956
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	2 cut(s)	154, 270
HphI	GGTGA	2 cut(s)	49, 385
Hpy166II	GTNNAC	2 cut(s)	297, 637
Hpy188I	TCNGA	3 cut(s)	543, 601, 714
Hpy188III	TCNNGA	5 cut(s)	308, 386, 436, 611, 690
Hpy8I	GTNNAC	2 cut(s)	297, 637
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	21, 952
HpyF3I	CTNAG	7 cut(s)	33, 86, 158, 215, 447, 540, 711
HpySE526I	ACGT	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	863
Hsp92II	CATG	5 cut(s)	152, 311, 360, 627, 956
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	676
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	514, 786
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	5 cut(s)	127, 451, 490, 526, 599
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	2 cut(s)	171, 560
MluCI	AATT	6 cut(s)	239, 352, 380, 442, 715, 764
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	7 cut(s)	28, 75, 517, 549, 570, 621, 853
MseI	TTAA	3 cut(s)	98, 723, 759
MslI	CAYNNNNRTG	1 cut(s)	253
MspCI	CTTAAG	2 cut(s)	722, 758
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	5 cut(s)	152, 311, 360, 627, 956
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	152
NspV	TTCGAA	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	152
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	270
PflMI	CCANNNNNTGG	1 cut(s)	822
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	219
PspPPI	RGGWCCY	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	98, 723, 759
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	171, 560
SfaNI	GCATC	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	113
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	253
SmlI	CTYRAG	3 cut(s)	722, 732, 758
SmoI	CTYRAG	3 cut(s)	722, 732, 758
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	6 cut(s)	239, 352, 380, 442, 715, 764
SspI	AATATT	1 cut(s)	910
SstI	GAGCTC	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	805
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	3 cut(s)	113, 273, 610
TasI	AATT	6 cut(s)	239, 352, 380, 442, 715, 764
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	98, 723, 759
Tru9I	TTAA	3 cut(s)	98, 723, 759
TseFI	GTSAC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	7 cut(s)	98, 296, 345, 365, 432, 801, 863
TspGWI	ACGGA	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	822
Vha464I	CTTAAG	2 cut(s)	722, 758
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	4 cut(s)	352, 380, 442, 715
XceI	RCATGY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.