Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Reverse (-)

30645999 .. 30652183

Gene Structure 6185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG275200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCAAACAGCAAGTACGAGTATTTCAAGTCATACGAAGTTGAAGATGAGATCTTCTTGCCTAATTTGATTGTTGTTCGAATTGATGGCTGTGATTTTCGAAGGTTTGCAGAAATGCATGATGACGAGTACAGCTTTGTCTTCAAGAAGACGTCCAAGTTTCACCAGAGGCGTGCCAGAATTATAGAAGTCCTTCAGTCTTATCTTTTGTGGCGACAAAATGATTGTCATACAAATAACCTGTGTAATACTTGCCTATGGGAGCTAATAATTAAAGGTGGAAAGACTGAAAGCGAAGCACTAGAGTTACTAGAGGGCACCAGTAAAGAAGAGAAAAACAACCTTCTTTTTGAAAAGTTTGAGATCAATTACCAAAAGTTAAATGAAATGTTTTATCAAGGTTCCTGCATTTTGAAAACTGAGGTGATTGACGTAGTAAAGCACAATGAGAATGGCTCTCCTGTCCGGAGACTTAGGAAAAAGTTAAGAATAGTCCATTCAAAGAATATAGCGGGGATAAGCTTTTGGAACAATCACAAATGTCTTCGGAATGAGCTCAGTGGCTTCTCTAAGGACATTGCAAAAGTTGAACCAGATTTTCTCAAATCCTTCCAGTTTGAAAAAAGATTGATGCCATCGACTTGGATTGTCATTAGAATTGATGGTTGCCATTTCCACAGGTTTTCTGATGTTCATGAATTTGTGAAGCCAAATGATGATCAGGCTCTCAAGCTTATGAATTCATGTGCAGTGGCTGTGGTAAAAGAGTTTCAAGACACAGTGTTTGCCTATGGCGTCAGTGATGAATACAGCTTTGTATTGAAGAAAGACTCTCAGTTCTATCAAAGGCGAGCAAGTAAAATAGTATCTGTCATGGTGCTCTTTACTTCCATGTACACAATGAAATGGAAAGATTTCTTCCCTGAGAGAGATTTGAAGTACCCTCCTTATTTTGATGGCCGCTCTGTATGCTATCCATCATCCGAAATTCTTCGAGATTATCTGGCGTGGAGACAAGTTGATTGCCATATCAACAATCAATACAATACTTGTTTTTGGCAGCTTGTTAAGTCCGGAAAGAGCAAAAGTGAAGCCCAGAATTTTCTGAAGGGTACTCTAGCAGGTGACAAAGATAAACTGCTCAAGCAATTCGGTATTGACTACAGCAAATTGCCTGTCATGTTCCGCCAAGGTTCCTCCTCTTTCTGGGACAAGGGAGACATTATAATGATAAACAACAACAAGCCATCTGATGAAAATTCTCAGAACAAAGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

426

Amino Acids

50.18

Weight (kDa)

8.66

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thg1	PF04446	6 - 40	4.7e-06	tRNAHis guanylyltransferase
Thg1C	PF14413	64 - 149	1.1e-28	Thg1 C terminal domain
Thg1	PF04446	200 - 326	1.9e-50	tRNAHis guanylyltransferase
Thg1C	PF14413	330 - 422	6.7e-33	Thg1 C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1226
AarI	CACCTGC	1 cut(s)	1112
AatII	GACGTC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	1112
AccB1I	GGYRCC	1 cut(s)	317
AccBSI	CCGCTC	1 cut(s)	963
AccIII	TCCGGA	2 cut(s)	465, 1073
AciI	CCGC	3 cut(s)	512, 961, 1186
AcoI	YGGCCR	1 cut(s)	958
AcsI	RAATTY	5 cut(s)	698, 739, 987, 1099, 1258
AcuI	CTGAAG	2 cut(s)	179, 1127
AcyI	GRCGYC	2 cut(s)	152, 795
AfaI	GTAC	5 cut(s)	17, 131, 896, 941, 1114
AfiI	CCNNNNNNNGG	1 cut(s)	1206
AluBI	AGCT	7 cut(s)	135, 265, 522, 556, 733, 813, 1063
AluI	AGCT	7 cut(s)	135, 265, 522, 556, 733, 813, 1063
Alw21I	GWGCWC	2 cut(s)	558, 882
Alw26I	GTCTC	3 cut(s)	463, 1006, 1212
AlwNI	CAGNNNCTG	1 cut(s)	755
Aor13HI	TCCGGA	2 cut(s)	465, 1073
AoxI	GGCC	1 cut(s)	958
ApeKI	GCWGC	1 cut(s)	1060
ApoI	RAATTY	5 cut(s)	698, 739, 987, 1099, 1258
ArsI	GACNNNNNNTTYG	6 cut(s)	211, 243, 767, 799, 1161, 1193
Asp700I	GAANNNNTTC	3 cut(s)	192, 914, 990
AsuHPI	GGTGA	3 cut(s)	155, 436, 1136
AsuII	TTCGAA	2 cut(s)	79, 100
BaeGI	GKGCMC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	3 cut(s)	133, 155, 536
Bbv12I	GWGCWC	2 cut(s)	558, 882
BbvI	GCAGC	1 cut(s)	1072
BccI	CCATC	6 cut(s)	80, 643, 656, 950, 985, 1255
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	3 cut(s)	463, 1006, 1212
BfaI	CTAG	3 cut(s)	302, 311, 1118
BfmI	CTRYAG	1 cut(s)	1162
BfuAI	ACCTGC	1 cut(s)	1112
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	2 cut(s)	961, 1061
BlsI	GCNGC	2 cut(s)	962, 1062
BmiI	GGNNCC	3 cut(s)	319, 403, 1195
BmsI	GCATC	1 cut(s)	621
BpiI	GAAGAC	3 cut(s)	133, 155, 536
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
Bpu14I	TTCGAA	2 cut(s)	79, 100
BpuEI	CTTGAG	2 cut(s)	713, 1127
BsaHI	GRCGYC	2 cut(s)	152, 795
BsaJI	CCNNGG	1 cut(s)	1189
BsaWI	WCCGGW	2 cut(s)	465, 1073
Bsc4I	CCNNNNNNNGG	1 cut(s)	1206
Bse1I	ACTGG	2 cut(s)	321, 613
Bse3DI	GCAATG	1 cut(s)	576
BseAI	TCCGGA	2 cut(s)	465, 1073
BseDI	CCNNGG	1 cut(s)	1189
BseGI	GGATG	1 cut(s)	980
BseLI	CCNNNNNNNGG	1 cut(s)	1206
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	5 cut(s)	411, 571, 848, 915, 1277
BseNI	ACTGG	2 cut(s)	321, 613
BseRI	GAGGAG	1 cut(s)	1189
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	1072
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	960
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	2 cut(s)	558, 882
BsiSI	CCGG	2 cut(s)	466, 1074
BslFI	GGGAC	1 cut(s)	1223
BslI	CCNNNNNNNGG	1 cut(s)	1206
BsmAI	GTCTC	3 cut(s)	463, 1006, 1212
BsmFI	GGGAC	1 cut(s)	1223
BsnI	GGCC	1 cut(s)	960
Bsp119I	TTCGAA	2 cut(s)	79, 100
Bsp1286I	GDGCHC	3 cut(s)	320, 558, 882
Bsp13I	TCCGGA	2 cut(s)	465, 1073
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	3 cut(s)	51, 363, 718
BspACI	CCGC	3 cut(s)	512, 961, 1186
BspANI	GGCC	1 cut(s)	960
BspCNI	CTCAG	5 cut(s)	412, 570, 847, 916, 1276
BspEI	TCCGGA	2 cut(s)	465, 1073
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	319, 403, 1195
BspMI	ACCTGC	1 cut(s)	1112
BspT104I	TTCGAA	2 cut(s)	79, 100
BspT107I	GGYRCC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	576
BsrGI	TGTACA	1 cut(s)	894
BsrI	ACTGG	2 cut(s)	321, 613
BssECI	CCNNGG	1 cut(s)	1189
BssMI	GATC	3 cut(s)	51, 363, 718
BssNI	GRCGYC	2 cut(s)	152, 795
BssT1I	CCWWGG	1 cut(s)	1189
Bst4CI	ACNGT	1 cut(s)	781
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	2 cut(s)	152, 795
BstAUI	TGTACA	1 cut(s)	894
BstBI	TTCGAA	2 cut(s)	79, 100
BstC8I	GCNNGC	2 cut(s)	174, 852
BstDEI	CTNAG	7 cut(s)	420, 473, 557, 570, 834, 924, 1263
BstF5I	GGATG	1 cut(s)	980
BstKTI	GATC	3 cut(s)	54, 366, 721
BstMAI	GTCTC	3 cut(s)	463, 1006, 1212
BstMBI	GATC	3 cut(s)	51, 363, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	969
BstSFI	CTRYAG	1 cut(s)	1162
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	1072
BstV2I	GAAGAC	3 cut(s)	133, 155, 536
BstX2I	RGATCY	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	960
BtsCI	GGATG	1 cut(s)	980
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	4 cut(s)	565, 756, 786, 805
BveI	ACCTGC	1 cut(s)	1112
Cac8I	GCNNGC	2 cut(s)	174, 852
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	1 cut(s)	694
CseI	GACGC	1 cut(s)	784
Csp6I	GTAC	5 cut(s)	16, 130, 895, 940, 1113
CviAII	CATG	6 cut(s)	119, 695, 744, 874, 892, 1180
CviQI	GTAC	5 cut(s)	16, 130, 895, 940, 1113
DdeI	CTNAG	7 cut(s)	420, 473, 557, 570, 834, 924, 1263
DpnI	GATC	3 cut(s)	53, 365, 720
DpnII	GATC	3 cut(s)	51, 363, 718
EaeI	YGGCCR	1 cut(s)	958
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	1175
Ecl136II	GAGCTC	1 cut(s)	556
Eco130I	CCWWGG	1 cut(s)	1189
Eco24I	GRGCYC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	179, 1127
EcoICRI	GAGCTC	1 cut(s)	556
EcoRI	GAATTC	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	1189
EcoT22I	ATGCAT	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	1189
FaeI	CATG	6 cut(s)	122, 698, 747, 877, 895, 1183
FaqI	GGGAC	1 cut(s)	1223
FatI	CATG	6 cut(s)	118, 694, 743, 873, 891, 1179
FauI	CCCGC	1 cut(s)	505
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	2 cut(s)	961, 1061
FokI	GGATG	1 cut(s)	967
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	2 cut(s)	961, 1061
FspBI	CTAG	3 cut(s)	302, 311, 1118
GluI	GCNGC	2 cut(s)	961, 1061
HaeIII	GGCC	1 cut(s)	960
HapII	CCGG	2 cut(s)	466, 1074
HgaI	GACGC	1 cut(s)	784
Hin1I	GRCGYC	2 cut(s)	152, 795
Hin1II	CATG	6 cut(s)	122, 698, 747, 877, 895, 1183
HindIII	AAGCTT	2 cut(s)	520, 731
HinfI	GANTC	1 cut(s)	830
HpaII	CCGG	2 cut(s)	466, 1074
HphI	GGTGA	3 cut(s)	155, 436, 1136
Hpy166II	GTNNAC	1 cut(s)	897
Hpy188I	TCNGA	7 cut(s)	549, 688, 985, 1107, 1252, 1266, 1280
Hpy188III	TCNNGA	6 cut(s)	145, 466, 695, 773, 995, 1074
Hpy8I	GTNNAC	1 cut(s)	897
HpyAV	CCTTC	5 cut(s)	96, 203, 353, 619, 1102
HpyCH4III	ACNGT	1 cut(s)	781
HpyCH4IV	ACGT	2 cut(s)	152, 432
HpyCH4V	TGCA	5 cut(s)	110, 118, 408, 581, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	969
HpyF3I	CTNAG	7 cut(s)	420, 473, 557, 570, 834, 924, 1263
HpySE526I	ACGT	2 cut(s)	152, 432
Hsp92I	GRCGYC	2 cut(s)	152, 795
Hsp92II	CATG	6 cut(s)	122, 698, 747, 877, 895, 1183
Kpn2I	TCCGGA	2 cut(s)	465, 1073
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	3 cut(s)	51, 363, 718
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	1072
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	302, 311, 1118
MaeII	ACGT	2 cut(s)	152, 432
MaeIII	GTNAC	2 cut(s)	306, 1124
MalI	GATC	3 cut(s)	53, 365, 720
MbiI	CCGCTC	1 cut(s)	963
MboI	GATC	3 cut(s)	51, 363, 718
MboII	GAAGA	9 cut(s)	46, 56, 133, 160, 341, 536, 835, 910, 983
MflI	RGATCY	1 cut(s)	51
MhlI	GDGCHC	3 cut(s)	320, 558, 882
MlyI	GAGTC	1 cut(s)	824
MnlI	CCTC	6 cut(s)	162, 307, 415, 954, 1207, 1210
Mph1103I	ATGCAT	1 cut(s)	120
MroI	TCCGGA	2 cut(s)	465, 1073
MroXI	GAANNNNTTC	3 cut(s)	192, 914, 990
MseI	TTAA	4 cut(s)	273, 380, 485, 1068
MslI	CAYNNNNRTG	1 cut(s)	1226
MspI	CCGG	2 cut(s)	466, 1074
MwoI	GCNNNNNNNGC	1 cut(s)	969
NdeII	GATC	3 cut(s)	51, 363, 718
NlaIII	CATG	6 cut(s)	122, 698, 747, 877, 895, 1183
NlaIV	GGNNCC	3 cut(s)	319, 403, 1195
NmuCI	GTSAC	1 cut(s)	1124
NsiI	ATGCAT	1 cut(s)	120
NspV	TTCGAA	2 cut(s)	79, 100
PagI	TCATGA	1 cut(s)	694
PaqCI	CACCTGC	1 cut(s)	1112
PdmI	GAANNNNTTC	3 cut(s)	192, 914, 990
PkrI	GCNGC	2 cut(s)	962, 1062
PleI	GAGTC	1 cut(s)	824
PpsI	GAGTC	1 cut(s)	824
PsiI	TTATAA	1 cut(s)	1226
Psp124BI	GAGCTC	1 cut(s)	558
PspN4I	GGNNCC	3 cut(s)	319, 403, 1195
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	5 cut(s)	17, 131, 896, 941, 1114
RsaNI	GTAC	5 cut(s)	16, 130, 895, 940, 1113
RseI	CAYNNNNRTG	1 cut(s)	1226
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	273, 380, 485, 1068
SatI	GCNGC	2 cut(s)	961, 1061
Sau3AI	GATC	3 cut(s)	51, 363, 718
SchI	GAGTC	1 cut(s)	824
SduI	GDGCHC	3 cut(s)	320, 558, 882
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	1162
SfuI	TTCGAA	2 cut(s)	79, 100
SmiMI	CAYNNNNRTG	1 cut(s)	1226
SmlI	CTYRAG	2 cut(s)	728, 1142
SmoI	CTYRAG	2 cut(s)	728, 1142
SsiI	CCGC	3 cut(s)	512, 961, 1186
SspMI	CTAG	3 cut(s)	302, 311, 1118
SstI	GAGCTC	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	1189
TaaI	ACNGT	1 cut(s)	781
TaiI	ACGT	2 cut(s)	155, 435
TaqI	TCGA	4 cut(s)	79, 100, 638, 994
TatI	WGTACW	2 cut(s)	129, 894
TauI	GCSGC	1 cut(s)	963
Tru1I	TTAA	4 cut(s)	273, 380, 485, 1068
Tru9I	TTAA	4 cut(s)	273, 380, 485, 1068
TscAI	CASTG	4 cut(s)	565, 756, 786, 805
TseFI	GTSAC	1 cut(s)	1124
TseI	GCWGC	1 cut(s)	1060
Tsp45I	GTSAC	1 cut(s)	1124
TspDTI	ATGAA	8 cut(s)	399, 683, 711, 732, 752, 819, 917, 1269
TspRI	CASTG	4 cut(s)	565, 756, 786, 805
XapI	RAATTY	5 cut(s)	698, 739, 987, 1099, 1258
XmnI	GAANNNNTTC	3 cut(s)	192, 914, 990
XspI	CTAG	3 cut(s)	302, 311, 1118
ZraI	GACGTC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.