RLG00000018350

tRNA(His) guanylyltransferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
28602006 .. 28607145
5140 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018350

Sequence Viewer

Length: 1530 bp
ATGGCAAACAGCAAATACGAGTACGTCAAGTCATACGAAGTTGAAGATGAGATCTTCTTGCCTAATTTGATTGTTGTTCGAATTGATGGCCGTGTTTTTCGAAGGTTTGCAGAAGTGCATGAGTTTGAGAAACCAAATGATGAGATAGCATTGAATTTGATGAATTCATGTGCAGTTTCTGTGTTGGAGGAGTTTCCAGACATCGTTTTTTCATATGGATTCAGTGACGAGTTCAGCTTTATCTTCAAGAAGTTGTCCAAGTTTCCCCAAAGGCATGCCAGCAAAGTAGAGTCTATTATAGTATCTTTCTTCAGCTTAATATATGTAATGAAATGGAGAGAATTCTTCCCTCATAAGGAGCTAAGATACCCCCCCTCATTTCATGCAAAGGTTATATCCTGCGGTGCAATAGAAGTCCTTCAGTCTTATCTTTTGTGGAGACAAAATGATTGTCATACAATTAACCTGTGTAATACTTGCCTATGGGAGCTAATAATTAAAGGTGGACAGGCTGAAAGCGAAGCACTAGAGTTACTAGAGGGCACCAGTAAAGAAGAGAAAAACAGCCTTCTTTTTGAAAAGTTTGAGATCAATTACCAAAAGTTAAATGAAATGTTTCGTCAAGGATCCTGCATTTTGAAAACTGAGGTGATTGACGTAGTAAAGCACAATGAGAATGGTTCTCCTGTCCGGAGACTTAGGAAAAAGTTAAGAATAGTCCATTCAAAGAACATATTCTCTAAGGACATTGGAAAAGTTGAACCAGATTTTCTCAAGTCCTTCCAGTTTGAAAAAAGATTGATGCCATCGACTTGGATTGTCATTAGAATTGATGGTTGCCATTTCCACAGGTTTTCTGATGTTCATGAATTTGTGAGGCCAAATGATGAGCAGGCTCTCAAGCTTATGAATTCATGTTCAGTGGCTGTGGTAAAAGAGTTTCAAGACACGGTGTTTGCCTATGGCGTCAGTGATGAATACAGCTTTGTATTGAAGAAAAACTCTCAGTTCTATCAAAGTAAAATAGTATCTGTCATGGTGTCACTCTTTACTTCCATGTACACAATGAAATGGAAAGATTTCTTCCCTGAGAGAGATTTGAAGTACCCTCCTTATTTTGATGGCCGCGCTGTATGCCATATCAACAATCAATACAATACTTGTTTTTGGCAGCTTGTTAAGTCCGGAAAGAGCAAAAGTGAAGCCCAGAATTTTCTGAAGGGTACTCTAGCAGGTGACAAAGATAAACTGCTCAAGCAATTCGATATTGACTACAGCAAATTGCCTGTCATGTTCCGCCAAGGTTCCTCCACTTTCTGGGACAAGGGAGACATTATAATGATAAACAACAACAAGCCATCTGTTGAAAATTCTCAGAACAAAGTTGTTATAGAGCATTGTAATATTATCGAGTCAAGCTTTTGGTGTGCACACCCAACAATTCTTAATCATAGCCATGGATGCAGGAGGCACCGGGTAAAGATTCTTCATACCAACATAAATCTCTACCAATTTACTGAAGTGATTTGA

Protein Analysis

510

Amino Acids

59.68

Weight (kDa)

8.4

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thg1 PF04446 6 - 133 2.3e-44 tRNAHis guanylyltransferase
Thg1C PF14413 139 - 225 2.2e-27 Thg1 C terminal domain
Thg1 PF04446 257 - 379 2.2e-47 tRNAHis guanylyltransferase
Thg1C PF14413 372 - 470 3.2e-24 Thg1 C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1337
AarI CACCTGC 1 cut(s) 1223
Acc36I ACCTGC 1 cut(s) 1223
AccB1I GGYRCC 2 cut(s) 542, 1470
AccB7I CCANNNNNTGG 1 cut(s) 1317
AccII CGCG 1 cut(s) 1128
AccIII TCCGGA 2 cut(s) 690, 1184
AciI CCGC 3 cut(s) 402, 1126, 1297
AclWI GGATC 2 cut(s) 621, 634
AcoI YGGCCR 2 cut(s) 88, 1123
AcsI RAATTY 7 cut(s) 154, 163, 341, 869, 910, 1210, 1369
AcuI CTGAAG 3 cut(s) 295, 404, 1238
AcyI GRCGYC 1 cut(s) 966
AfaI GTAC 4 cut(s) 23, 1061, 1106, 1225
AfiI CCNNNNNNNGG 2 cut(s) 355, 1317
AluBI AGCT 8 cut(s) 237, 315, 361, 490, 904, 984, 1174, 1419
AluI AGCT 8 cut(s) 237, 315, 361, 490, 904, 984, 1174, 1419
Alw21I GWGCWC 1 cut(s) 1432
Alw26I GTCTC 3 cut(s) 433, 688, 1323
Alw44I GTGCAC 1 cut(s) 1428
AlwI GGATC 2 cut(s) 621, 634
AlwNI CAGNNNCTG 2 cut(s) 179, 926
Aor13HI TCCGGA 2 cut(s) 690, 1184
AoxI GGCC 3 cut(s) 88, 878, 1123
ApaLI GTGCAC 1 cut(s) 1428
ApeKI GCWGC 1 cut(s) 1171
ApoI RAATTY 7 cut(s) 154, 163, 341, 869, 910, 1210, 1369
ArsI GACNNNNNNTTYG 6 cut(s) 436, 468, 938, 970, 1272, 1304
Asp700I GAANNNNTTC 4 cut(s) 417, 615, 734, 1079
AspLEI GCGC 1 cut(s) 1130
AsuC2I CCSGG 1 cut(s) 1475
AsuHPI GGTGA 2 cut(s) 661, 1247
AsuII TTCGAA 2 cut(s) 79, 100
BaeGI GKGCMC 2 cut(s) 545, 1432
BamHI GGATCC 1 cut(s) 626
BanI GGYRCC 2 cut(s) 542, 1470
BarI GAAGNNNNNNTAC 2 cut(s) 1470, 1502
Bbv12I GWGCWC 1 cut(s) 1432
BbvI GCAGC 1 cut(s) 1183
BccI CCATC 5 cut(s) 80, 814, 827, 1115, 1366
BceAI ACGGC 1 cut(s) 75
BcnI CCSGG 1 cut(s) 1475
BcoDI GTCTC 3 cut(s) 433, 688, 1323
BfaI CTAG 3 cut(s) 527, 536, 1229
BfmI CTRYAG 1 cut(s) 1273
BfuAI ACCTGC 1 cut(s) 1223
BglII AGATCT 1 cut(s) 51
BisI GCNGC 2 cut(s) 1126, 1172
BlsI GCNGC 2 cut(s) 1127, 1173
Bme1390I CCNGG 1 cut(s) 1475
BmiI GGNNCC 4 cut(s) 544, 628, 1306, 1472
BmrFI CCNGG 1 cut(s) 1475
BmsI GCATC 2 cut(s) 792, 1451
Bpu14I TTCGAA 2 cut(s) 79, 100
BpuEI CTTGAG 3 cut(s) 758, 884, 1238
BpuMI CCSGG 1 cut(s) 1475
BsaHI GRCGYC 1 cut(s) 966
BsaJI CCNNGG 2 cut(s) 1300, 1456
BsaWI WCCGGW 2 cut(s) 690, 1184
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 1317
Bse1I ACTGG 2 cut(s) 546, 784
BseAI TCCGGA 2 cut(s) 690, 1184
BseDI CCNNGG 2 cut(s) 1300, 1456
BseGI GGATG 1 cut(s) 1466
BseLI CCNNNNNNNGG 2 cut(s) 355, 1317
BseMII CTCAG 4 cut(s) 636, 1019, 1080, 1388
BseNI ACTGG 2 cut(s) 546, 784
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 2 cut(s) 545, 1432
BseXI GCAGC 1 cut(s) 1183
BsgI GTGCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 1128
BshFI GGCC 3 cut(s) 90, 880, 1125
BshNI GGYRCC 2 cut(s) 542, 1470
BsiHKAI GWGCWC 1 cut(s) 1432
BsiSI CCGG 3 cut(s) 691, 1185, 1474
BslFI GGGAC 1 cut(s) 1334
BslI CCNNNNNNNGG 2 cut(s) 355, 1317
BsmAI GTCTC 3 cut(s) 433, 688, 1323
BsmFI GGGAC 1 cut(s) 1334
BsnI GGCC 3 cut(s) 90, 880, 1125
Bsp119I TTCGAA 2 cut(s) 79, 100
Bsp1286I GDGCHC 2 cut(s) 545, 1432
Bsp13I TCCGGA 2 cut(s) 690, 1184
Bsp1407I TGTACA 1 cut(s) 1059
Bsp143I GATC 3 cut(s) 51, 588, 626
Bsp19I CCATGG 1 cut(s) 1456
BspACI CCGC 3 cut(s) 402, 1126, 1297
BspANI GGCC 3 cut(s) 90, 880, 1125
BspCNI CTCAG 4 cut(s) 637, 1018, 1081, 1387
BspEI TCCGGA 2 cut(s) 690, 1184
BspFNI CGCG 1 cut(s) 1128
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 4 cut(s) 544, 628, 1306, 1472
BspMI ACCTGC 1 cut(s) 1223
BspPI GGATC 2 cut(s) 621, 634
BspT104I TTCGAA 2 cut(s) 79, 100
BspT107I GGYRCC 2 cut(s) 542, 1470
BsrGI TGTACA 1 cut(s) 1059
BsrI ACTGG 2 cut(s) 546, 784
BssECI CCNNGG 2 cut(s) 1300, 1456
BssMI GATC 3 cut(s) 51, 588, 626
BssNI GRCGYC 1 cut(s) 966
BssT1I CCWWGG 2 cut(s) 1300, 1456
Bst4CI ACNGT 1 cut(s) 952
Bst6I CTCTTC 1 cut(s) 549
BstACI GRCGYC 1 cut(s) 966
BstAUI TGTACA 1 cut(s) 1059
BstBI TTCGAA 2 cut(s) 79, 100
BstC8I GCNNGC 3 cut(s) 276, 280, 894
BstDEI CTNAG 7 cut(s) 362, 645, 698, 741, 1005, 1089, 1374
BstDSI CCRYGG 1 cut(s) 1456
BstF5I GGATG 1 cut(s) 1466
BstFNI CGCG 1 cut(s) 1128
BstHHI GCGC 1 cut(s) 1130
BstKTI GATC 3 cut(s) 54, 591, 629
BstMAI GTCTC 3 cut(s) 433, 688, 1323
BstMBI GATC 3 cut(s) 51, 588, 626
BstMWI GCNNNNNNNGC 2 cut(s) 1134, 1461
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 1473
BstSFI CTRYAG 1 cut(s) 1273
BstSLI GKGCMC 2 cut(s) 545, 1432
BstUI CGCG 1 cut(s) 1128
BstV1I GCAGC 1 cut(s) 1183
BstX2I RGATCY 2 cut(s) 51, 626
BstXI CCANNNNNNTGG 1 cut(s) 813
BstYI RGATCY 2 cut(s) 51, 626
BsuRI GGCC 3 cut(s) 90, 880, 1125
BtgI CCRYGG 1 cut(s) 1456
BtsCI GGATG 1 cut(s) 1466
BtsIMutI CAGTG 3 cut(s) 229, 927, 976
BveI ACCTGC 1 cut(s) 1223
Cac8I GCNNGC 3 cut(s) 276, 280, 894
CaiI CAGNNNCTG 2 cut(s) 179, 926
CciI TCATGA 1 cut(s) 865
CfoI GCGC 1 cut(s) 1130
CseI GACGC 1 cut(s) 955
Csp6I GTAC 4 cut(s) 22, 1060, 1105, 1224
CviQI GTAC 4 cut(s) 22, 1060, 1105, 1224
DdeI CTNAG 7 cut(s) 362, 645, 698, 741, 1005, 1089, 1374
DpnI GATC 3 cut(s) 53, 590, 628
DpnII GATC 3 cut(s) 51, 588, 626
EaeI YGGCCR 2 cut(s) 88, 1123
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
EciI GGCGGA 1 cut(s) 1286
Eco130I CCWWGG 2 cut(s) 1300, 1456
Eco57I CTGAAG 3 cut(s) 295, 404, 1238
EcoRI GAATTC 3 cut(s) 163, 341, 910
EcoT14I CCWWGG 2 cut(s) 1300, 1456
ErhI CCWWGG 2 cut(s) 1300, 1456
FaqI GGGAC 1 cut(s) 1334
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 1126, 1172
FokI GGATG 1 cut(s) 1473
Fsp4HI GCNGC 2 cut(s) 1126, 1172
FspBI CTAG 3 cut(s) 527, 536, 1229
GlaI GCGC 1 cut(s) 1129
GluI GCNGC 2 cut(s) 1126, 1172
HaeIII GGCC 3 cut(s) 90, 880, 1125
HapII CCGG 3 cut(s) 691, 1185, 1474
HgaI GACGC 1 cut(s) 955
HhaI GCGC 1 cut(s) 1130
Hin1I GRCGYC 1 cut(s) 966
Hin6I GCGC 1 cut(s) 1128
HinP1I GCGC 1 cut(s) 1128
HindIII AAGCTT 2 cut(s) 902, 1417
HinfI GANTC 4 cut(s) 219, 290, 1412, 1483
HpaII CCGG 3 cut(s) 691, 1185, 1474
HphI GGTGA 2 cut(s) 661, 1247
Hpy166II GTNNAC 3 cut(s) 506, 1062, 1430
Hpy188I TCNGA 3 cut(s) 859, 1218, 1377
Hpy188III TCNNGA 6 cut(s) 197, 247, 691, 866, 944, 1185
Hpy8I GTNNAC 3 cut(s) 506, 1062, 1430
HpyAV CCTTC 5 cut(s) 96, 428, 578, 790, 1213
HpyCH4III ACNGT 1 cut(s) 952
HpyCH4IV ACGT 2 cut(s) 24, 657
HpyCH4V TGCA 8 cut(s) 110, 118, 173, 386, 407, 633, 1430, 1464
HpyF10VI GCNNNNNNNGC 2 cut(s) 1134, 1461
HpyF3I CTNAG 7 cut(s) 362, 645, 698, 741, 1005, 1089, 1374
HpySE526I ACGT 2 cut(s) 24, 657
Hsp92I GRCGYC 1 cut(s) 966
HspAI GCGC 1 cut(s) 1128
Kpn2I TCCGGA 2 cut(s) 690, 1184
Kzo9I GATC 3 cut(s) 51, 588, 626
LmnI GCTCC 2 cut(s) 358, 487
Lsp1109I GCAGC 1 cut(s) 1183
LweI GCATC 2 cut(s) 792, 1451
MaeI CTAG 3 cut(s) 527, 536, 1229
MaeII ACGT 2 cut(s) 24, 657
MaeIII GTNAC 4 cut(s) 224, 531, 1041, 1235
MalI GATC 3 cut(s) 53, 590, 628
MboI GATC 3 cut(s) 51, 588, 626
MboII GAAGA 9 cut(s) 46, 56, 235, 301, 337, 566, 1006, 1075, 1478
MflI RGATCY 2 cut(s) 51, 626
MhlI GDGCHC 2 cut(s) 545, 1432
MlyI GAGTC 2 cut(s) 299, 1421
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 9 cut(s) 181, 360, 385, 532, 640, 870, 1119, 1318, 1461
MroI TCCGGA 2 cut(s) 690, 1184
MroXI GAANNNNTTC 4 cut(s) 417, 615, 734, 1079
MseI TTAA 7 cut(s) 317, 462, 498, 605, 710, 1179, 1446
MslI CAYNNNNRTG 2 cut(s) 1337, 1455
MspI CCGG 3 cut(s) 691, 1185, 1474
MspR9I CCNGG 1 cut(s) 1475
MvnI CGCG 1 cut(s) 1128
MwoI GCNNNNNNNGC 2 cut(s) 1134, 1461
NciI CCSGG 1 cut(s) 1475
NcoI CCATGG 1 cut(s) 1456
NdeI CATATG 1 cut(s) 214
NdeII GATC 3 cut(s) 51, 588, 626
NlaIV GGNNCC 4 cut(s) 544, 628, 1306, 1472
NmuCI GTSAC 3 cut(s) 224, 1041, 1235
NspI RCATGY 1 cut(s) 278
NspV TTCGAA 2 cut(s) 79, 100
PaeI GCATGC 1 cut(s) 278
PagI TCATGA 1 cut(s) 865
PaqCI CACCTGC 1 cut(s) 1223
PdmI GAANNNNTTC 4 cut(s) 417, 615, 734, 1079
PfeI GAWTC 2 cut(s) 219, 1483
PflMI CCANNNNNTGG 1 cut(s) 1317
PkrI GCNGC 2 cut(s) 1127, 1173
PleI GAGTC 2 cut(s) 298, 1420
PpsI GAGTC 2 cut(s) 298, 1420
PsiI TTATAA 1 cut(s) 1337
PspN4I GGNNCC 4 cut(s) 544, 628, 1306, 1472
PstNI CAGNNNCTG 2 cut(s) 179, 926
PsuI RGATCY 2 cut(s) 51, 626
RsaI GTAC 4 cut(s) 23, 1061, 1106, 1225
RsaNI GTAC 4 cut(s) 22, 1060, 1105, 1224
RseI CAYNNNNRTG 2 cut(s) 1337, 1455
SaqAI TTAA 7 cut(s) 317, 462, 498, 605, 710, 1179, 1446
SatI GCNGC 2 cut(s) 1126, 1172
Sau3AI GATC 3 cut(s) 51, 588, 626
SchI GAGTC 2 cut(s) 299, 1421
ScrFI CCNGG 1 cut(s) 1475
SduI GDGCHC 2 cut(s) 545, 1432
SfaNI GCATC 2 cut(s) 792, 1451
SfcI CTRYAG 1 cut(s) 1273
SfuI TTCGAA 2 cut(s) 79, 100
SmiMI CAYNNNNRTG 2 cut(s) 1337, 1455
SmlI CTYRAG 3 cut(s) 773, 899, 1253
SmoI CTYRAG 3 cut(s) 773, 899, 1253
SphI GCATGC 1 cut(s) 278
SsiI CCGC 3 cut(s) 402, 1126, 1297
SspI AATATT 1 cut(s) 1405
SspMI CTAG 3 cut(s) 527, 536, 1229
StyD4I CCNGG 1 cut(s) 1473
StyI CCWWGG 2 cut(s) 1300, 1456
TaaI ACNGT 1 cut(s) 952
TaiI ACGT 2 cut(s) 27, 660
TaqI TCGA 5 cut(s) 79, 100, 809, 1263, 1410
TatI WGTACW 1 cut(s) 1059
TauI GCSGC 1 cut(s) 1128
TfiI GAWTC 2 cut(s) 219, 1483
Tru1I TTAA 7 cut(s) 317, 462, 498, 605, 710, 1179, 1446
Tru9I TTAA 7 cut(s) 317, 462, 498, 605, 710, 1179, 1446
TscAI CASTG 3 cut(s) 229, 927, 976
TseFI GTSAC 3 cut(s) 224, 1041, 1235
TseI GCWGC 1 cut(s) 1171
Tsp45I GTSAC 3 cut(s) 224, 1041, 1235
TspRI CASTG 3 cut(s) 229, 927, 976
Van91I CCANNNNNTGG 1 cut(s) 1317
VneI GTGCAC 1 cut(s) 1428
XapI RAATTY 7 cut(s) 154, 163, 341, 869, 910, 1210, 1369
XceI RCATGY 1 cut(s) 278
XmnI GAANNNNTTC 4 cut(s) 417, 615, 734, 1079
XspI CTAG 3 cut(s) 527, 536, 1229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.