Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Forward (+)

61823786 .. 61830095

Gene Structure 6310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTTCGTCAAGGTTCCTGCATTTTGAAAACTGAGGTGATTGACGTAGTAAAGCACAATGAGAATGGTTCTCCTGTCCGGAGACTTAGGAAAAAGTTAAGAATAGTCCATTCAAAGAATATAGCGGGGATAAGCTTTTGGAACAAGCACAAATGTCTTCCGAATGAGCTCGGTAGCTTCTCTAAGGACATTGGAAAAGTTGAACCAGATTTTCTCAAGTCCTTCCAGTTTCAAAAAAGATTGATGCCATCGACTTGGATTGTCATTAGAATTGATGGTTGCCATTTCCACAGGTTTTCTGATGTTCATGAATTTGTGAAGCCAAATGATGAGCAGGCTCTGAAGCTTATGAATTCATGTGCAGTGGCTGTGGTAAAAGAGTTTCAAGACACAGTGTTTGCCTATGGTGTCAGTGATGAATACAGCTTTGTATTGAAGAAAGACTCTCAGTTCTATCAAAGGCGAGCAAGTAAAATAATATCTGTCATGGTGTCACTCTTTACTTCCATGTACACAATGAAATGGAAAGATTTCTTCCCTGAGAGAGATTTGAAGTACCCTCCTTATTTTGATGGCCGCGCGCTGTATGCTATCCATCTTCTGAAATTCTTCAAGATTATCTGGCGTGGAGACAAGTTGCAGGCCATATCAACAATCAATACAATACTTGTTTTTGGCAGCTTGTTAAGTCCGGAAAGAGCAAAAGTGAAGCCCAGAATTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

241

Amino Acids

28.2

Weight (kDa)

9.8

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thg1	PF04446	71 - 195	1.8e-52	tRNAHis guanylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	579, 581
AccIII	TCCGGA	2 cut(s)	78, 691
AciI	CCGC	2 cut(s)	125, 577
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	4 cut(s)	311, 352, 605, 717
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	512, 557
AgsI	TTSAA	8 cut(s)	28, 114, 203, 233, 386, 436, 553, 613
AluBI	AGCT	6 cut(s)	135, 169, 177, 346, 426, 681
AluI	AGCT	6 cut(s)	135, 169, 177, 346, 426, 681
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	76, 624
AlwNI	CAGNNNCTG	2 cut(s)	340, 368
Aor13HI	TCCGGA	2 cut(s)	78, 691
AoxI	GGCC	2 cut(s)	574, 642
ApeKI	GCWGC	1 cut(s)	678
ApoI	RAATTY	4 cut(s)	311, 352, 605, 717
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
Asp700I	GAANNNNTTC	2 cut(s)	530, 608
AspLEI	GCGC	2 cut(s)	581, 583
AsuHPI	GGTGA	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	690
BccI	CCATC	4 cut(s)	256, 269, 566, 603
BcoDI	GTCTC	2 cut(s)	76, 624
BisI	GCNGC	2 cut(s)	577, 679
BlsI	GCNGC	2 cut(s)	578, 680
BmiI	GGNNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	200
BsaWI	WCCGGW	2 cut(s)	78, 691
Bse1I	ACTGG	1 cut(s)	226
BseAI	TCCGGA	2 cut(s)	78, 691
BseMII	CTCAG	3 cut(s)	24, 461, 531
BseNI	ACTGG	1 cut(s)	226
BsePI	GCGCGC	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	690
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	2 cut(s)	579, 581
BshFI	GGCC	2 cut(s)	576, 644
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	79, 692
BsmAI	GTCTC	2 cut(s)	76, 624
BsnI	GGCC	2 cut(s)	576, 644
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp13I	TCCGGA	2 cut(s)	78, 691
Bsp1407I	TGTACA	1 cut(s)	510
BspACI	CCGC	2 cut(s)	125, 577
BspANI	GGCC	2 cut(s)	576, 644
BspCNI	CTCAG	3 cut(s)	25, 460, 532
BspEI	TCCGGA	2 cut(s)	78, 691
BspFNI	CGCG	2 cut(s)	579, 581
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	226
BssHII	GCGCGC	1 cut(s)	579
Bst4CI	ACNGT	1 cut(s)	394
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	4 cut(s)	336, 465, 581, 642
BstDEI	CTNAG	5 cut(s)	33, 86, 183, 447, 540
BstFNI	CGCG	2 cut(s)	579, 581
BstHHI	GCGC	2 cut(s)	581, 583
BstMAI	GTCTC	2 cut(s)	76, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstUI	CGCG	2 cut(s)	579, 581
BstV1I	GCAGC	1 cut(s)	690
BstV2I	GAAGAC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	576, 644
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	369, 399, 418
Cac8I	GCNNGC	4 cut(s)	336, 465, 581, 642
CaiI	CAGNNNCTG	2 cut(s)	340, 368
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	2 cut(s)	581, 583
Csp6I	GTAC	2 cut(s)	511, 556
CviAII	CATG	4 cut(s)	308, 357, 487, 508
CviQI	GTAC	2 cut(s)	511, 556
DdeI	CTNAG	5 cut(s)	33, 86, 183, 447, 540
EaeI	YGGCCR	1 cut(s)	574
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	4 cut(s)	311, 360, 490, 511
FaiI	YATR	9 cut(s)	122, 309, 350, 358, 405, 488, 509, 588, 647
FatI	CATG	4 cut(s)	307, 356, 486, 507
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	577, 679
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	577, 679
GlaI	GCGC	2 cut(s)	580, 582
GluI	GCNGC	2 cut(s)	577, 679
HaeIII	GGCC	2 cut(s)	576, 644
HapII	CCGG	2 cut(s)	79, 692
HhaI	GCGC	2 cut(s)	581, 583
Hin1II	CATG	4 cut(s)	311, 360, 490, 511
Hin6I	GCGC	2 cut(s)	579, 581
HinP1I	GCGC	2 cut(s)	579, 581
HindIII	AAGCTT	2 cut(s)	133, 344
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	2 cut(s)	79, 692
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	5 cut(s)	162, 301, 342, 603, 725
Hpy188III	TCNNGA	5 cut(s)	79, 308, 386, 613, 692
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	21, 362, 640
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	5 cut(s)	33, 86, 183, 447, 540
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	311, 360, 490, 511
HspAI	GCGC	2 cut(s)	579, 581
Kpn2I	TCCGGA	2 cut(s)	78, 691
Lsp1109I	GCAGC	1 cut(s)	690
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	492
MboII	GAAGA	5 cut(s)	149, 448, 526, 590, 601
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	5 cut(s)	270, 311, 352, 605, 717
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	2 cut(s)	28, 570
MroI	TCCGGA	2 cut(s)	78, 691
MroXI	GAANNNNTTC	2 cut(s)	530, 608
MseI	TTAA	2 cut(s)	98, 686
MspI	CCGG	2 cut(s)	79, 692
MvnI	CGCG	2 cut(s)	579, 581
MwoI	GCNNNNNNNGC	1 cut(s)	587
NlaIII	CATG	4 cut(s)	311, 360, 490, 511
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	492
PagI	TCATGA	1 cut(s)	307
PauI	GCGCGC	1 cut(s)	579
PdmI	GAANNNNTTC	2 cut(s)	530, 608
PkrI	GCNGC	2 cut(s)	578, 680
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	340, 368
PteI	GCGCGC	1 cut(s)	579
RsaI	GTAC	2 cut(s)	512, 557
RsaNI	GTAC	2 cut(s)	511, 556
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	98, 686
SatI	GCNGC	2 cut(s)	577, 679
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	270, 311, 352, 605, 717
SsiI	CCGC	2 cut(s)	125, 577
SstI	GAGCTC	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	251
TasI	AATT	5 cut(s)	270, 311, 352, 605, 717
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	579
Tru1I	TTAA	2 cut(s)	98, 686
Tru9I	TTAA	2 cut(s)	98, 686
TscAI	CASTG	3 cut(s)	369, 399, 418
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	1 cut(s)	678
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	6 cut(s)	296, 324, 345, 365, 432, 533
TspRI	CASTG	3 cut(s)	369, 399, 418
XapI	RAATTY	4 cut(s)	311, 352, 605, 717
XmnI	GAANNNNTTC	2 cut(s)	530, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.