Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8223372.1

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 744

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8223372.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

agaatacttcattcgaagaatatagctgggcgaagtttttggaacgagcatgcgagtcttaggaatgagctcggtatatttacaagggacattggaaaagttgaacccgattatctcaggtccttccagtttgggaacaaattgatgccatcaacgtggattgttattagaatcgatggttgccactttcacaggtttactgaagttcatgagtttgtgaagccgaatgatgagcaagctctcaaccttatgaattcatgtgccgttgctgtggtgaaagaatttccagacattattttctcctatggcgtgagcgatgaatacagctttgttttcaagaagaattctcagttctgtcaaaggcaagcaagtgagatggtatctgtcattgtgtcattcttcacttcctcatatgtgacgaagtggagtggtttcttccctcagaaagagttgaagtgccctccttattttgatgggcgtgctgtatgctatccgtcatctgatattcttcgagattatctggcatggaggcaagttgactgccatatcaacaatcaatacaatacttgtttttgggagcttgttatgtctggaaaaggcaaaagtgaagctcagaattttcttaagggtactcaagcaggcgacaaagatagactgcttaagcaatttggtattgactacaacaagttacaagttatgtttcgccaaggttcatccattttctgggataagggagatgttata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

248

Amino Acids

28.82

Weight (kDa)

8.42

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	723
AcsI	RAATTY	4 cut(s)	253, 281, 343, 616
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	1 cut(s)	723
AflII	CTTAAG	2 cut(s)	623, 659
AgsI	TTSAA	3 cut(s)	104, 337, 454
AluBI	AGCT	6 cut(s)	26, 70, 239, 327, 580, 611
AluI	AGCT	6 cut(s)	26, 70, 239, 327, 580, 611
Alw21I	GWGCWC	1 cut(s)	72
ApoI	RAATTY	4 cut(s)	253, 281, 343, 616
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	4 cut(s)	157, 170, 370, 467
BceAI	ACGGC	1 cut(s)	248
BfrI	CTTAAG	2 cut(s)	623, 659
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmsI	GCATC	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	618
Bsa29I	ATCGAT	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	1 cut(s)	723
Bse1I	ACTGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	706
BseGI	GGATG	1 cut(s)	713
BseLI	CCNNNNNNNGG	1 cut(s)	723
BseMII	CTCAG	4 cut(s)	130, 362, 455, 626
BseNI	ACTGG	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	461
BseYI	CCCAGC	1 cut(s)	26
BshVI	ATCGAT	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	72, 461
BspCNI	CTCAG	4 cut(s)	129, 361, 454, 625
BspDI	ATCGAT	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	14
BspTI	CTTAAG	2 cut(s)	623, 659
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	706
BssT1I	CCWWGG	1 cut(s)	706
BstAFI	CTTAAG	2 cut(s)	623, 659
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	51, 237, 366, 480, 640
BstDEI	CTNAG	5 cut(s)	59, 116, 348, 441, 612
BstF5I	GGATG	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	53
BstSLI	GKGCMC	1 cut(s)	461
BstXI	CCANNNNNNTGG	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	713
Cac8I	GCNNGC	5 cut(s)	51, 237, 366, 480, 640
CciI	TCATGA	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	4 cut(s)	50, 209, 258, 525
CviJI	RGCY	7 cut(s)	26, 70, 223, 239, 327, 580, 611
CviKI_1	RGCY	7 cut(s)	26, 70, 223, 239, 327, 580, 611
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	5 cut(s)	59, 116, 348, 441, 612
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRI	GAATTC	2 cut(s)	253, 343
EcoT14I	CCWWGG	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	4 cut(s)	53, 212, 261, 528
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	4 cut(s)	49, 208, 257, 524
FauNDI	CATATG	1 cut(s)	412
FokI	GGATG	1 cut(s)	700
FriOI	GRGCYC	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	53, 212, 261, 528
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	55, 171
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	198, 538
Hpy188I	TCNGA	3 cut(s)	444, 502, 615
Hpy188III	TCNNGA	5 cut(s)	209, 287, 337, 512, 591
Hpy8I	GTNNAC	2 cut(s)	198, 538
HpyAV	CCTTC	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	155
HpyF3I	CTNAG	5 cut(s)	59, 116, 348, 441, 612
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	53, 212, 261, 528
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	9 cut(s)	12, 103, 140, 178, 300, 506, 576, 624, 709
LweI	GCATC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	415, 687
MboII	GAAGA	5 cut(s)	28, 352, 391, 427, 500
MhlI	GDGCHC	2 cut(s)	72, 461
MluCI	AATT	6 cut(s)	140, 253, 281, 343, 616, 665
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	418, 450, 471, 522
MseI	TTAA	2 cut(s)	624, 660
MslI	CAYNNNNRTG	1 cut(s)	154
MspCI	CTTAAG	2 cut(s)	623, 659
NdeI	CATATG	1 cut(s)	412
NlaIII	CATG	4 cut(s)	53, 212, 261, 528
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	53
PagI	TCATGA	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	171
PflMI	CCANNNNNTGG	1 cut(s)	723
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PpuMI	RGGWCCY	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	120
PspPPI	RGGWCCY	1 cut(s)	120
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	624, 660
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	72, 461
SfaNI	GCATC	1 cut(s)	135
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	154
SmlI	CTYRAG	3 cut(s)	623, 633, 659
SmoI	CTYRAG	3 cut(s)	623, 633, 659
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	6 cut(s)	140, 253, 281, 343, 616, 665
SstI	GAGCTC	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	706
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	14, 174, 511
TasI	AATT	6 cut(s)	140, 253, 281, 343, 616, 665
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	2 cut(s)	624, 660
Tru9I	TTAA	2 cut(s)	624, 660
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	5 cut(s)	197, 246, 266, 333, 702
TspGWI	ACGGA	1 cut(s)	483
Van91I	CCANNNNNTGG	1 cut(s)	723
Vha464I	CTTAAG	2 cut(s)	623, 659
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	4 cut(s)	253, 281, 343, 616
XceI	RCATGY	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.