MD05G1030700.v1.1

tRNA(His) guanylyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
4909611 .. 4922248
12638 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1030700.v1.1.491

Sequence Viewer

Length: 1569 bp
ATGGCAAACAGTAAATACGAGTATGTCAAGTCGTATGAAGTTGAAGACGAGGTTTTCCGGCCCAATTTGATCGTTGTTCGGATTGATGGTCGTGATTTTCAAAGGTTTTCTGAAGTTCATGAATTTGAGAAACCAAATGATGAGGTAGCTCTGAATTTGATGAATTCATGCGCAATTTCTGTGTCAGAGGCATTTCCAGATGTAGTGTTTTCATATGGCTTCAGTGATGAATACAGCTTTGTCTTCAAGAAGACGTCCAGGTTCTACCAAAGGCGTGCCAGCAAAGTAGGGACCATTATCGTATCTTTCTTCACCTCTGCATATGTCATGAAATGGAGAGAATTCTTCCCTCATAAGGAATTAATGTACAACCCTTCATTTCATGCACATGTTATACGCTGTGCATCAGAAGAAGTCCTTCAGTCATATCTTTTGTGGAGACAAAACAATTGTCATACAAATAACCTGCATAACACCTGCCTATGGGAGCTAATTAAATCTGGAATGACCAAAAGCGAAGCAGTGGACTTACTAAAGGACAGCAGCAAGGAAGAAAAAAATGACCTTCTTTACAGAAAGTGTGATATCAACTATCAAAAGTTGCATTCAATGTTTCGACAAGGATCTTGCGTTTTGAAAACAGAGGTGTTTGAAGTTGTGAAGCACAATGAAAATGGTTCTCCTGTCAAGAGACTTAGGAGAAAGTCAAGCATGGTCCATTCGAAGAATATAGCTGAGAGAAGTTTTTGGAACAAGCACACACATCTTCAGAAGGAACTTGGTTGTTTTACAAAGGATATTGGAAAAGTTGAACCTGATTATATTAGGTCCTTCCAGCATGAAGACAAACTGATCCCATCAACATGGGTTGTAATTAGGATCGATGGTTGCCATTTTCACAGGTTTTCTGAAGTTCATGAATTTGTGAAGCCGAATGATGAGCAAGCTATCAACCTTATGAATTCATGTGCAGTGGCTGTTCTAAAAGAGTTCCAAGACTTGGTTTTCTCTTATGGAGTCAGTGACGAATACAGCTTTGTTTTGAAGAAGGATTCTCAATTCTATCAGAGGCAAGCAAGTGAGATGGTATCTGTTATTGTGTCATTCTTCACTTCCATGTACGTTATGAAATGGAAAGATTTCTTCCCACAAAAAGAGTTGAAGTACCCTCCATATTTTGATGGGCGTGCTGTCTGCTATCCTTCATATGAAATTCTTCGAGATTATCTATCCTGGAGACAAGTCGATTGCCACATTAACAACCAATACAATACTTGTTTCTGGGAGCTTGTTAAGTCTGGAAAAAGAAAAAGTGAAGCTCAGCTCGTCCTGAAGGGTACTCAAACAGGAGACAAAGAGAAATTGCTTAACCAATTTGGTATCGAGTACAACAAATTACCAGTCATGTTCCGCCATGGATCTTCTGCTTTGTGGGACAAGGAAGACACCACAAGGATACACGAGAAGGAAGAATGTAATGGTAATTCTGGGAAAAGAGTTATTGTAGAACATTGTAATATTATTGAGCCAACCTTTTGGGATGCACACCCAACAATTCTTTCTGGGTGA

Protein Analysis

523

Amino Acids

61.46

Weight (kDa)

7.57

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thg1 PF04446 6 - 133 3e-47 tRNAHis guanylyltransferase
Thg1C PF14413 139 - 234 9.4e-26 Thg1 C terminal domain
Thg1 PF04446 273 - 401 1.9e-53 tRNAHis guanylyltransferase
Thg1C PF14413 405 - 508 6.6e-34 Thg1 C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 485
AatII GACGTC 1 cut(s) 257
Acc16I TGCGCA 1 cut(s) 172
Acc36I ACCTGC 2 cut(s) 474, 485
AccB7I CCANNNNNTGG 1 cut(s) 1000
AciI CCGC 1 cut(s) 1411
AclWI GGATC 4 cut(s) 631, 847, 887, 1426
AcsI RAATTY 7 cut(s) 122, 154, 163, 341, 920, 961, 1212
AcuI CTGAAG 6 cut(s) 132, 205, 404, 752, 930, 1352
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 5 cut(s) 368, 1121, 1166, 1339, 1388
AfiI CCNNNNNNNGG 3 cut(s) 355, 483, 1000
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 9 cut(s) 44, 101, 247, 609, 637, 653, 812, 1045, 1162
AjnI CCWGG 2 cut(s) 257, 1232
AjuI GAANNNNNNNTTGG 1 cut(s) 1543
AluBI AGCT 9 cut(s) 149, 237, 490, 734, 947, 1035, 1288, 1319, 1324
AluI AGCT 9 cut(s) 149, 237, 490, 734, 947, 1035, 1288, 1319, 1324
Alw26I GTCTC 4 cut(s) 433, 685, 1231, 1344
AlwI GGATC 4 cut(s) 631, 847, 887, 1426
AlwNI CAGNNNCTG 1 cut(s) 977
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 543
ApoI RAATTY 7 cut(s) 122, 154, 163, 341, 920, 961, 1212
ArsI GACNNNNNNTTYG 4 cut(s) 436, 468, 1386, 1418
AseI ATTAAT 1 cut(s) 362
Asp700I GAANNNNTTC 3 cut(s) 417, 1139, 1215
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 4 cut(s) 60, 291, 715, 828
AsuHPI GGTGA 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 722
AvaII GGWCC 3 cut(s) 291, 715, 828
BauI CACGAG 1 cut(s) 1460
BbsI GAAGAC 5 cut(s) 51, 235, 257, 849, 1449
BbvI GCAGC 1 cut(s) 555
BccI CCATC 5 cut(s) 80, 865, 878, 1078, 1175
BciT130I CCWGG 2 cut(s) 259, 1234
BciVI GTATCC 1 cut(s) 1449
BcoDI GTCTC 4 cut(s) 433, 685, 1231, 1344
BfuAI ACCTGC 2 cut(s) 474, 485
BfuI GTATCC 1 cut(s) 1449
BisI GCNGC 1 cut(s) 544
BlpI GCTNAGC 1 cut(s) 1320
BlsI GCNGC 1 cut(s) 545
Bme1390I CCNGG 2 cut(s) 259, 1234
Bme18I GGWCC 3 cut(s) 291, 715, 828
BmgT120I GGNCC 4 cut(s) 60, 291, 715, 828
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 2 cut(s) 259, 1234
BmsI GCATC 2 cut(s) 413, 1531
BpiI GAAGAC 5 cut(s) 51, 235, 257, 849, 1449
BpmI CTGGAG 1 cut(s) 1255
Bpu1102I GCTNAGC 1 cut(s) 1320
Bpu14I TTCGAA 1 cut(s) 722
Bsa29I ATCGAT 1 cut(s) 882
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 1414
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 483, 1000
Bse1I ACTGG 1 cut(s) 1400
BseBI CCWGG 2 cut(s) 259, 1234
BseCI ATCGAT 1 cut(s) 882
BseDI CCNNGG 1 cut(s) 1414
BseGI GGATG 1 cut(s) 1546
BseLI CCNNNNNNNGG 3 cut(s) 355, 483, 1000
BseMII CTCAG 2 cut(s) 726, 1334
BseNI ACTGG 1 cut(s) 1400
BseXI GCAGC 1 cut(s) 555
BsgI GTGCAG 1 cut(s) 990
BshFI GGCC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 882
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 2 cut(s) 304, 1448
BslI CCNNNNNNNGG 3 cut(s) 355, 483, 1000
BsmAI GTCTC 4 cut(s) 433, 685, 1231, 1344
BsmFI GGGAC 2 cut(s) 304, 1448
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 1 cut(s) 61
Bsp119I TTCGAA 1 cut(s) 722
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 5 cut(s) 69, 623, 852, 879, 1418
Bsp1720I GCTNAGC 1 cut(s) 1320
Bsp19I CCATGG 1 cut(s) 1414
BspACI CCGC 1 cut(s) 1411
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 2 cut(s) 727, 1333
BspDI ATCGAT 1 cut(s) 882
BspHI TCATGA 3 cut(s) 118, 327, 916
BspLI GGNNCC 1 cut(s) 292
BspMI ACCTGC 2 cut(s) 474, 485
BspPI GGATC 4 cut(s) 631, 847, 887, 1426
BspT104I TTCGAA 1 cut(s) 722
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 1 cut(s) 1400
BssECI CCNNGG 1 cut(s) 1414
BssMI GATC 5 cut(s) 69, 623, 852, 879, 1418
BssNI GRCGYC 1 cut(s) 254
BssSI CACGAG 1 cut(s) 1460
BssT1I CCWWGG 1 cut(s) 1414
Bst2BI CACGAG 1 cut(s) 1460
Bst2UI CCWGG 2 cut(s) 259, 1234
Bst4CI ACNGT 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 722
BstC8I GCNNGC 5 cut(s) 276, 280, 945, 1074, 1188
BstDEI CTNAG 3 cut(s) 695, 735, 1320
BstDSI CCRYGG 1 cut(s) 1414
BstF5I GGATG 1 cut(s) 1546
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 5 cut(s) 72, 626, 855, 882, 1421
BstMAI GTCTC 4 cut(s) 433, 685, 1231, 1344
BstMBI GATC 5 cut(s) 69, 623, 852, 879, 1418
BstNI CCWGG 2 cut(s) 259, 1234
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 2 cut(s) 257, 1232
BstV1I GCAGC 1 cut(s) 555
BstV2I GAAGAC 5 cut(s) 51, 235, 257, 849, 1449
BstX2I RGATCY 2 cut(s) 623, 1418
BstXI CCANNNNNNTGG 2 cut(s) 864, 1536
BstYI RGATCY 2 cut(s) 623, 1418
Bsu15I ATCGAT 1 cut(s) 882
BsuI GTATCC 1 cut(s) 1449
BsuRI GGCC 1 cut(s) 61
BsuTUI ATCGAT 1 cut(s) 882
BtgI CCRYGG 1 cut(s) 1414
BtsCI GGATG 1 cut(s) 1546
BtsI GCAGTG 2 cut(s) 528, 978
BtsIMutI CAGTG 4 cut(s) 229, 528, 978, 1027
BveI ACCTGC 2 cut(s) 474, 485
Cac8I GCNNGC 5 cut(s) 276, 280, 945, 1074, 1188
CaiI CAGNNNCTG 1 cut(s) 977
CciI TCATGA 3 cut(s) 118, 327, 916
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 4 cut(s) 60, 291, 715, 828
ClaI ATCGAT 1 cut(s) 882
Csp6I GTAC 5 cut(s) 367, 1120, 1165, 1338, 1387
CviQI GTAC 5 cut(s) 367, 1120, 1165, 1338, 1387
DdeI CTNAG 3 cut(s) 695, 735, 1320
DpnI GATC 5 cut(s) 71, 625, 854, 881, 1420
DpnII GATC 5 cut(s) 69, 623, 852, 879, 1418
EciI GGCGGA 1 cut(s) 1400
Eco130I CCWWGG 1 cut(s) 1414
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 3 cut(s) 291, 715, 828
Eco57I CTGAAG 6 cut(s) 132, 205, 404, 752, 930, 1352
EcoO109I RGGNCCY 1 cut(s) 828
EcoRI GAATTC 3 cut(s) 163, 341, 961
EcoRII CCWGG 2 cut(s) 257, 1232
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 1414
ErhI CCWWGG 1 cut(s) 1414
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 2 cut(s) 304, 1448
FauNDI CATATG 3 cut(s) 214, 322, 1207
Fnu4HI GCNGC 1 cut(s) 544
FokI GGATG 1 cut(s) 1553
Fsp4HI GCNGC 1 cut(s) 544
FspI TGCGCA 1 cut(s) 172
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 544
GsuI CTGGAG 1 cut(s) 1255
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 58
HhaI GCGC 1 cut(s) 173
Hin1I GRCGYC 1 cut(s) 254
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 2 cut(s) 1017, 1052
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 8 cut(s) 81, 112, 153, 187, 409, 771, 910, 1068
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 9 cut(s) 384, 428, 575, 766, 841, 1042, 1212, 1327, 1459
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 2 cut(s) 254, 1122
HpyCH4V TGCA 7 cut(s) 320, 386, 404, 469, 604, 971, 1544
HpyF3I CTNAG 3 cut(s) 695, 735, 1320
HpySE526I ACGT 2 cut(s) 254, 1122
Hsp92I GRCGYC 1 cut(s) 254
HspAI GCGC 1 cut(s) 171
Kzo9I GATC 5 cut(s) 69, 623, 852, 879, 1418
LmnI GCTCC 2 cut(s) 487, 1285
Lsp1109I GCAGC 1 cut(s) 555
LweI GCATC 2 cut(s) 413, 1531
MaeII ACGT 2 cut(s) 254, 1122
MaeIII GTNAC 1 cut(s) 1022
MalI GATC 5 cut(s) 71, 625, 854, 881, 1420
MboI GATC 5 cut(s) 69, 623, 852, 879, 1418
MfeI CAATTG 1 cut(s) 448
MflI RGATCY 2 cut(s) 623, 1418
MlyI GAGTC 1 cut(s) 1026
MnlI CCTC 8 cut(s) 43, 136, 181, 325, 360, 637, 1062, 1179
MroXI GAANNNNTTC 3 cut(s) 417, 1139, 1215
MseI TTAA 5 cut(s) 362, 495, 1257, 1293, 1368
MslI CAYNNNNRTG 3 cut(s) 387, 862, 1115
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 2 cut(s) 259, 1234
MunI CAATTG 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 2 cut(s) 259, 1234
NcoI CCATGG 1 cut(s) 1414
NdeI CATATG 3 cut(s) 214, 322, 1207
NdeII GATC 5 cut(s) 69, 623, 852, 879, 1418
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 1022
NsbI TGCGCA 1 cut(s) 172
NspI RCATGY 1 cut(s) 392
NspV TTCGAA 1 cut(s) 722
PagI TCATGA 3 cut(s) 118, 327, 916
PaqCI CACCTGC 1 cut(s) 485
PciI ACATGT 1 cut(s) 388
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 3 cut(s) 417, 1139, 1215
PfeI GAWTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 1000
PfoI TCCNGGA 1 cut(s) 1232
PkrI GCNGC 1 cut(s) 545
PleI GAGTC 1 cut(s) 1025
PpsI GAGTC 1 cut(s) 1025
PpuMI RGGWCCY 1 cut(s) 828
PscI ACATGT 1 cut(s) 388
PshBI ATTAAT 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 828
Psp6I CCWGG 2 cut(s) 257, 1232
PspGI CCWGG 2 cut(s) 257, 1232
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 4 cut(s) 60, 291, 715, 828
PspPPI RGGWCCY 1 cut(s) 828
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 2 cut(s) 623, 1418
RsaI GTAC 5 cut(s) 368, 1121, 1166, 1339, 1388
RsaNI GTAC 5 cut(s) 367, 1120, 1165, 1338, 1387
RseI CAYNNNNRTG 3 cut(s) 387, 862, 1115
SaqAI TTAA 5 cut(s) 362, 495, 1257, 1293, 1368
SatI GCNGC 1 cut(s) 544
Sau3AI GATC 5 cut(s) 69, 623, 852, 879, 1418
Sau96I GGNCC 4 cut(s) 60, 291, 715, 828
SchI GAGTC 1 cut(s) 1026
ScrFI CCNGG 2 cut(s) 259, 1234
SfaNI GCATC 2 cut(s) 413, 1531
SfuI TTCGAA 1 cut(s) 722
SinI GGWCC 3 cut(s) 291, 715, 828
SmiMI CAYNNNNRTG 3 cut(s) 387, 862, 1115
SsiI CCGC 1 cut(s) 1411
SspI AATATT 1 cut(s) 1519
StyD4I CCNGG 2 cut(s) 257, 1232
StyI CCWWGG 1 cut(s) 1414
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 2 cut(s) 257, 1125
TaqI TCGA 6 cut(s) 616, 722, 882, 1219, 1245, 1383
TatI WGTACW 2 cut(s) 366, 1386
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 5 cut(s) 362, 495, 1257, 1293, 1368
Tru9I TTAA 5 cut(s) 362, 495, 1257, 1293, 1368
TscAI CASTG 4 cut(s) 229, 528, 978, 1027
TseFI GTSAC 1 cut(s) 1022
TseI GCWGC 1 cut(s) 543
Tsp45I GTSAC 1 cut(s) 1022
TspRI CASTG 4 cut(s) 229, 528, 978, 1027
Van91I CCANNNNNTGG 1 cut(s) 1000
VpaK11BI GGWCC 3 cut(s) 291, 715, 828
VspI ATTAAT 1 cut(s) 362
XapI RAATTY 7 cut(s) 122, 154, 163, 341, 920, 961, 1212
XceI RCATGY 1 cut(s) 392
XmnI GAANNNNTTC 3 cut(s) 417, 1139, 1215
ZraI GACGTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.