Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Reverse (-)

42362324 .. 42363596

Gene Structure 1273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCAAACAGCAAATACGAGTACGTCAAGTCCTACGAGTTTGAAGACGAGGTTTTCCTGCCCAACTTGATCGTCGTTCGCATCGACGGCCGTGATTTTCGAACTTTTGCTGAAGTGCATGAGTTTGAGAAACCAAATGATGAGGTAGCACTCAACTTGATGAATTCATGTGCAGTTTCAGTGTCGGAGGAGTTTCCGGACATAGTGTTCTCGTATGGGTTCAGTGACGAGTTCAGCTTTGTCTTCAAGAAGACGTCCAAGTTCCACCAGAGGCGTGCCAGCAAAGTAGAGTCCATTGTTGTATCCTTCTTCACCTCGGTGTATGTCTCGAAATGGAGGGAATTTTTCCCTAGTAAGGAGCTGAGATACCCTCCTTCGTTTCACTCACGGGTTATAGCCTGCGCTACGATTGAGGTTCTTCAATCGTACCTTCTGTGGAGACAGAGTAGTTGTCATACAAGCAACCTGCACGGTACTTGCCTATGGGAGCTTGTAAAAGATGGGAAGACGGAAAGCGAAGCACTGGAGTTACTGAAGGGAGCCAGTAAAGAAGAGAAAAACAGCCTTCTTTTTGAAAAGTTTGACATCATCTATCAAAAATTGGATGCTATATTCCGTCAAGGATCCTGCATTTTGAAAACTGAGGTGATGGACGTTGTGAAGCACAATGAGAATGGTTCTCCTGTGGAGAGGCTTAGGAAAAAGTTAAGAATACTTCATTCAAAGAACATAGCTGGGCGAAGTTTTTGGAACGAGCATGCAAGTCTTAGGAATGAGCTCGGTCCTTCCAGTTTGGGAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

268

Amino Acids

31.02

Weight (kDa)

6.72

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thg1	PF04446	6 - 133	1.1e-47	tRNAHis guanylyltransferase
Thg1C	PF14413	139 - 225	2.7e-23	Thg1 C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	474
AccIII	TCCGGA	1 cut(s)	196
AclWI	GGATC	2 cut(s)	618, 631
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	163, 341
AcuI	CTGAAG	2 cut(s)	132, 554
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	3 cut(s)	23, 428, 475
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	6 cut(s)	44, 247, 422, 575, 637, 723
AleI	CACNNNNGTG	1 cut(s)	317
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	5 cut(s)	237, 361, 490, 734, 778
AluI	AGCT	5 cut(s)	237, 361, 490, 734, 778
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	2 cut(s)	331, 433
AlwI	GGATC	2 cut(s)	618, 631
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	163, 341
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	782
AsuHPI	GGTGA	2 cut(s)	304, 658
AsuII	TTCGAA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	782
BamHI	GGATCC	1 cut(s)	623
BanII	GRGCYC	1 cut(s)	780
BbsI	GAAGAC	4 cut(s)	51, 235, 257, 512
Bbv12I	GWGCWC	1 cut(s)	780
BccI	CCATC	2 cut(s)	494, 643
BceAI	ACGGC	2 cut(s)	75, 103
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	331, 433
BfaI	CTAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	782
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	2 cut(s)	541, 625
BmsI	GCATC	2 cut(s)	90, 595
BpiI	GAAGAC	4 cut(s)	51, 235, 257, 512
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	695
Bpu14I	TTCGAA	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse1I	ACTGG	3 cut(s)	528, 543, 789
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMII	CTCAG	2 cut(s)	353, 633
BseNI	ACTGG	3 cut(s)	528, 543, 789
BseRI	GAGGAG	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	88
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	2 cut(s)	192, 452
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	780
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	331, 433
BsnI	GGCC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	69, 623
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	354, 634
BspEI	TCCGGA	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	541, 625
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	2 cut(s)	618, 631
BspT104I	TTCGAA	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	528, 543, 789
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	69, 623
BssNI	GRCGYC	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	100
BstC8I	GCNNGC	4 cut(s)	276, 280, 400, 759
BstDEI	CTNAG	4 cut(s)	362, 642, 695, 767
BstF5I	GGATG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	2 cut(s)	72, 626
BstMAI	GTCTC	2 cut(s)	331, 433
BstMBI	GATC	2 cut(s)	69, 623
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	761
BstV2I	GAAGAC	4 cut(s)	51, 235, 257, 512
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BstZI	CGGCCG	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	3 cut(s)	186, 229, 521
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	4 cut(s)	276, 280, 400, 759
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	782
Csp6I	GTAC	3 cut(s)	22, 427, 474
CviAII	CATG	3 cut(s)	119, 168, 758
CviQI	GTAC	3 cut(s)	22, 427, 474
DdeI	CTNAG	4 cut(s)	362, 642, 695, 767
DpnI	GATC	2 cut(s)	71, 625
DpnII	GATC	2 cut(s)	69, 623
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	778
EclXI	CGGCCG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	780
Eco47I	GGWCC	1 cut(s)	782
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	778
Eco57I	CTGAAG	2 cut(s)	132, 554
EcoICRI	GAGCTC	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	780
FaeI	CATG	3 cut(s)	122, 171, 761
FatI	CATG	3 cut(s)	118, 167, 757
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	1 cut(s)	780
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	403
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	1 cut(s)	545
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	122, 171, 761
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	304, 658
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	197, 247, 328
Hpy99I	CGWCG	2 cut(s)	77, 89
HpyAV	CCTTC	6 cut(s)	316, 384, 440, 529, 575, 795
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	3 cut(s)	24, 254, 654
HpyCH4V	TGCA	5 cut(s)	118, 173, 469, 630, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	4 cut(s)	362, 642, 695, 767
HpySE526I	ACGT	3 cut(s)	24, 254, 654
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	122, 171, 761
HspAI	GCGC	1 cut(s)	402
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	69, 623
LmnI	GCTCC	3 cut(s)	358, 487, 539
LweI	GCATC	2 cut(s)	90, 595
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	3 cut(s)	24, 254, 654
MaeIII	GTNAC	2 cut(s)	224, 528
MalI	GATC	2 cut(s)	71, 625
MboI	GATC	2 cut(s)	69, 623
MboII	GAAGA	7 cut(s)	56, 235, 262, 301, 410, 517, 563
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	1 cut(s)	780
MluCI	AATT	4 cut(s)	163, 341, 599, 802
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	165
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	707
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	2 cut(s)	69, 623
NlaIII	CATG	3 cut(s)	122, 171, 761
NlaIV	GGNNCC	2 cut(s)	541, 625
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	761
NspV	TTCGAA	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	317
PaeI	GCATGC	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	780
PspFI	CCCAGC	1 cut(s)	734
PspN4I	GGNNCC	2 cut(s)	541, 625
PspPI	GGNCC	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	623
RsaI	GTAC	3 cut(s)	23, 428, 475
RsaNI	GTAC	3 cut(s)	22, 427, 474
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	780
SaqAI	TTAA	1 cut(s)	707
Sau3AI	GATC	2 cut(s)	69, 623
Sau96I	GGNCC	1 cut(s)	782
SchI	GAGTC	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	2 cut(s)	90, 595
SfuI	TTCGAA	1 cut(s)	100
SinI	GGWCC	1 cut(s)	782
SmiMI	CAYNNNNRTG	1 cut(s)	317
SphI	GCATGC	1 cut(s)	761
Sse9I	AATT	4 cut(s)	163, 341, 599, 802
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	780
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	3 cut(s)	27, 257, 657
TaqI	TCGA	3 cut(s)	84, 100, 329
TaqII	GACCGA	1 cut(s)	770
TasI	AATT	4 cut(s)	163, 341, 599, 802
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TscAI	CASTG	3 cut(s)	186, 229, 528
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	156, 176, 707
TspGWI	ACGGA	2 cut(s)	524, 605
TspRI	CASTG	3 cut(s)	186, 229, 528
VpaK11BI	GGWCC	1 cut(s)	782
XapI	RAATTY	2 cut(s)	163, 341
XceI	RCATGY	1 cut(s)	761
XspI	CTAG	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.