Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002254

Physical Location & Seq

Genomic Coordinates Reverse (-)

29646598 .. 29651512

Gene Structure 4915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGAAATGGAGAGAATTCTTCCCTCATAAGGAGCTAAGATACCCCCCCTCATTTTGTGCAAAGGTTATATCCTGTGGTGCAATATATGTCCTTCAGTCTTATCTTTTGTGGCGACAAAATGATTGTCATACAAATAACCTGTGTAATACTTGCCTATGGGAGCTAATAATTAAAGGTGGAAAGACTGAAAGCGAAGCACTAGAGTTACTAAAGGGCACCTGTAAAGAAGAGAAAAACAACCTTCTTTTTGAAAATTTTGAGATCAATTACCAAAAGTTAAATGAAATGTTTCGTCAAGGTTCCTGCATTTTGAAAACTGAGGTGATTGACGTAGTAAAGCACAATGAGAATGGTTCCCCTGTCCGGAGACTTAGGAAAAAGTTAAGAATAGTCCATTCAAAGAATATAGCGGGGATAAGCTTTTGGAACAAGCACAAATGTCTTCGGAATGAGCTCGGTAGCTTCTCTAAGGACATTGCAAAAGTTGAACCAGATTTTCTCAAATCCTTCCAGTTTGAAAAAAGATTGATGCCATCGACTTGGATTGTCATTAGAATTGATGGTTGCCATTTCCACAGGTTTTCTGATGTTCATGAATTTGTGAAGCCAAATGACGAGCAGGCTCTCAAGCTTATGAATTCATGTGCAGTGGCTGTGGTAAAAGAGTTTCAAGACACAGTGTTTGCCTATGGCGTCAGTGATGAATACAGCTTTGTATTGAAGAAAGACTCTCAGTTCTATCAAAGGCGAGCAAGTAAAATAGTATCTGTCATGGTGTCACTCTTTACTTCCATGTACACAATGAAATGGAAAGATTTCTTCCCTGAGAGAGATTTGAAGTACCCTCCTTATTTTGATGGCCGCGCTGTATGCTATCCATCATCTGAAATTCTTCGAGATTATCTGGCGTGGAGACAAGTTGATTGCCATATCAACAATCAATACAATACTTGTTTTTGGCAGCTTGTTAAGTCCGGAAAGAGCAAAAGTGAAGCCCAGAATTTTCTGAAGGGTACTCTAGCAGGTGACAAAGATAAACTGCTCAAGCAATTCGGTATTGACTACAGCAAATTGCCTGTCATGTTCCGCCAAGGTTCCTCCACTTTCTGGGACAAGGGAGACATTATAATGATAAACAACAACAAGCCATCTGATGAAAATTCTCAGAACAAAGTTGTTATAGAGCACTGTAATATTATCGAGTCAAGCTTCTGGTGTGCACACCCAACAATTCTTAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000166 GO:0000278 GO:0000287 GO:0000966 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008033 GO:0008144 GO:0008150 GO:0008152 GO:0008192 GO:0008193 GO:0008283 GO:0009451 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0017076 GO:0019001 GO:0022402 GO:0022607 GO:0030554 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032559 GO:0032561 GO:0033554 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0046483 GO:0046872 GO:0050896 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051716 GO:0065003 GO:0070013 GO:0070568 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0099116 GO:1901265 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thg1 Thg1C

Protein Analysis

414

Amino Acids

48.43

Weight (kDa)

8.92

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thg1C	PF14413	31 - 115	5.8e-30	Thg1 C terminal domain
Thg1	PF04446	166 - 293	2.5e-54	tRNAHis guanylyltransferase
Thg1C	PF14413	297 - 400	3.9e-34	Thg1 C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G31580 AT2G32320 AT2G32320 AT2G32320
fragaria_vesca	FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_1g22971 FvH4_2g15830
malus_domestica	MD05G1030700.v1.1
prunus_persica	Prupe.1G573900_v2.0.a1
pyrus_communis	pycom05g02180 pycom10g02040
rosa_chinensis	RchiOBHm_Chr2g0117491 RchiOBHm_Chr2g0117501 RchiOBHm_Chr6g0279211
rosa_laevigata	RLG00000013155 RLG00000018350
rosa_multiflora	Rmu_co8223372.1_g000001 Rmu_sc0003454.1_g000019 Rmu_sc0003454.1_g000020 Rmu_sc0014203.1_g000009 Rmu_sc0014536.1_g000004 Rmu_sc0041068.1_g000002
rosa_roxburghii	Rroxscaffold_2G00126490 Rroxscaffold_7G00189030
rosa_rugosa	Rorug02G0212800 Rorug06G0123800
rosa_samantha	Rh2CG271800 Rh2DG275200 Rh2DG294700 Rh6AG232000 Rh6BG236900 Rh6CG238800 Rh6DG230400
rosa_wichuraiana	Rw6G020310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1127
AarI	CACCTGC	1 cut(s)	1013
Acc36I	ACCTGC	1 cut(s)	1013
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	1107
AccII	CGCG	1 cut(s)	864
AccIII	TCCGGA	2 cut(s)	363, 974
AciI	CCGC	3 cut(s)	410, 862, 1087
AcoI	YGGCCR	1 cut(s)	859
AcsI	RAATTY	7 cut(s)	14, 253, 596, 637, 888, 1000, 1159
AcuI	CTGAAG	2 cut(s)	77, 1028
AcyI	GRCGYC	1 cut(s)	693
AfaI	GTAC	3 cut(s)	797, 842, 1015
AfiI	CCNNNNNNNGG	3 cut(s)	28, 363, 1107
AgsI	TTSAA	8 cut(s)	251, 313, 399, 488, 518, 671, 721, 838
AluBI	AGCT	9 cut(s)	34, 163, 420, 454, 462, 631, 711, 964, 1209
AluI	AGCT	9 cut(s)	34, 163, 420, 454, 462, 631, 711, 964, 1209
Alw21I	GWGCWC	3 cut(s)	456, 1188, 1222
Alw26I	GTCTC	3 cut(s)	361, 907, 1113
Alw44I	GTGCAC	1 cut(s)	1218
AlwNI	CAGNNNCTG	1 cut(s)	653
Aor13HI	TCCGGA	2 cut(s)	363, 974
AoxI	GGCC	1 cut(s)	859
ApaLI	GTGCAC	1 cut(s)	1218
ApeKI	GCWGC	1 cut(s)	961
ApoI	RAATTY	7 cut(s)	14, 253, 596, 637, 888, 1000, 1159
ArsI	GACNNNNNNTTYG	6 cut(s)	109, 141, 665, 697, 1062, 1094
Asp700I	GAANNNNTTC	3 cut(s)	288, 815, 891
AspLEI	GCGC	1 cut(s)	866
AsuHPI	GGTGA	2 cut(s)	334, 1037
BaeGI	GKGCMC	2 cut(s)	218, 1222
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	434
Bbv12I	GWGCWC	3 cut(s)	456, 1188, 1222
BbvI	GCAGC	1 cut(s)	973
BccI	CCATC	5 cut(s)	541, 554, 851, 886, 1156
BcoDI	GTCTC	3 cut(s)	361, 907, 1113
BfaI	CTAG	2 cut(s)	200, 1019
BfmI	CTRYAG	1 cut(s)	1063
BfuAI	ACCTGC	1 cut(s)	1013
BisI	GCNGC	2 cut(s)	862, 962
BlsI	GCNGC	2 cut(s)	863, 963
BmiI	GGNNCC	4 cut(s)	217, 301, 355, 1096
BmsI	GCATC	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	611, 1028
BsaHI	GRCGYC	1 cut(s)	693
BsaJI	CCNNGG	1 cut(s)	1090
BsaWI	WCCGGW	2 cut(s)	363, 974
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 363, 1107
Bse1I	ACTGG	1 cut(s)	511
Bse3DI	GCAATG	1 cut(s)	474
BseAI	TCCGGA	2 cut(s)	363, 974
BseDI	CCNNGG	1 cut(s)	1090
BseLI	CCNNNNNNNGG	3 cut(s)	28, 363, 1107
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	4 cut(s)	309, 746, 816, 1178
BseNI	ACTGG	1 cut(s)	511
BseSI	GKGCMC	2 cut(s)	218, 1222
BseXI	GCAGC	1 cut(s)	973
BsgI	GTGCAG	1 cut(s)	666
Bsh1236I	CGCG	1 cut(s)	864
BshFI	GGCC	1 cut(s)	861
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	3 cut(s)	456, 1188, 1222
BsiSI	CCGG	2 cut(s)	364, 975
BslFI	GGGAC	1 cut(s)	1124
BslI	CCNNNNNNNGG	3 cut(s)	28, 363, 1107
BsmAI	GTCTC	3 cut(s)	361, 907, 1113
BsmFI	GGGAC	1 cut(s)	1124
BsnI	GGCC	1 cut(s)	861
Bsp1286I	GDGCHC	4 cut(s)	218, 456, 1188, 1222
Bsp13I	TCCGGA	2 cut(s)	363, 974
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	1 cut(s)	261
BspACI	CCGC	3 cut(s)	410, 862, 1087
BspANI	GGCC	1 cut(s)	861
BspCNI	CTCAG	4 cut(s)	310, 745, 817, 1177
BspEI	TCCGGA	2 cut(s)	363, 974
BspFNI	CGCG	1 cut(s)	864
BspHI	TCATGA	1 cut(s)	592
BspLI	GGNNCC	4 cut(s)	217, 301, 355, 1096
BspMI	ACCTGC	1 cut(s)	1013
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	474
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	1090
BssMI	GATC	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	693
BssT1I	CCWWGG	1 cut(s)	1090
Bst4CI	ACNGT	2 cut(s)	679, 1190
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	693
BstAUI	TGTACA	1 cut(s)	795
BstC8I	GCNNGC	2 cut(s)	621, 750
BstDEI	CTNAG	7 cut(s)	35, 318, 371, 468, 732, 825, 1164
BstFNI	CGCG	1 cut(s)	864
BstHHI	GCGC	1 cut(s)	866
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	3 cut(s)	361, 907, 1113
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	1 cut(s)	870
BstSFI	CTRYAG	1 cut(s)	1063
BstSLI	GKGCMC	2 cut(s)	218, 1222
BstUI	CGCG	1 cut(s)	864
BstV1I	GCAGC	1 cut(s)	973
BstV2I	GAAGAC	1 cut(s)	434
BstXI	CCANNNNNNTGG	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	861
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	4 cut(s)	654, 684, 703, 1186
BveI	ACCTGC	1 cut(s)	1013
Cac8I	GCNNGC	2 cut(s)	621, 750
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	592
CfoI	GCGC	1 cut(s)	866
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	796, 841, 1014
CviAII	CATG	5 cut(s)	593, 642, 772, 793, 1081
CviQI	GTAC	3 cut(s)	796, 841, 1014
DdeI	CTNAG	7 cut(s)	35, 318, 371, 468, 732, 825, 1164
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	859
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	1076
Ecl136II	GAGCTC	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	1090
Eco24I	GRGCYC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	77, 1028
EcoICRI	GAGCTC	1 cut(s)	454
EcoRI	GAATTC	2 cut(s)	14, 637
EcoT14I	CCWWGG	1 cut(s)	1090
EcoT22I	ATGCAT	1 cut(s)	1243
EcoT38I	GRGCYC	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	1090
FaeI	CATG	5 cut(s)	596, 645, 775, 796, 1084
FaqI	GGGAC	1 cut(s)	1124
FatI	CATG	5 cut(s)	592, 641, 771, 792, 1080
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	862, 962
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	2 cut(s)	862, 962
FspBI	CTAG	2 cut(s)	200, 1019
GlaI	GCGC	1 cut(s)	865
GluI	GCNGC	2 cut(s)	862, 962
HaeIII	GGCC	1 cut(s)	861
HapII	CCGG	2 cut(s)	364, 975
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	1 cut(s)	866
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	5 cut(s)	596, 645, 775, 796, 1084
Hin6I	GCGC	1 cut(s)	864
HinP1I	GCGC	1 cut(s)	864
HindIII	AAGCTT	3 cut(s)	418, 629, 1207
HinfI	GANTC	2 cut(s)	728, 1202
HpaII	CCGG	2 cut(s)	364, 975
HphI	GGTGA	2 cut(s)	334, 1037
Hpy166II	GTNNAC	2 cut(s)	798, 1220
Hpy188I	TCNGA	6 cut(s)	447, 586, 886, 1008, 1153, 1167
Hpy188III	TCNNGA	5 cut(s)	364, 593, 671, 896, 975
Hpy8I	GTNNAC	2 cut(s)	798, 1220
HpyAV	CCTTC	4 cut(s)	101, 251, 517, 1003
HpyCH4III	ACNGT	2 cut(s)	679, 1190
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	7 cut(s)	59, 80, 306, 479, 647, 1220, 1241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	870
HpyF3I	CTNAG	7 cut(s)	35, 318, 371, 468, 732, 825, 1164
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	5 cut(s)	596, 645, 775, 796, 1084
HspAI	GCGC	1 cut(s)	864
Kpn2I	TCCGGA	2 cut(s)	363, 974
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	31, 160
Lsp1109I	GCAGC	1 cut(s)	973
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	200, 1019
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	3 cut(s)	204, 777, 1025
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	6 cut(s)	10, 239, 434, 733, 811, 884
MhlI	GDGCHC	4 cut(s)	218, 456, 1188, 1222
MlyI	GAGTC	2 cut(s)	722, 1211
MnlI	CCTC	5 cut(s)	33, 58, 313, 855, 1108
Mph1103I	ATGCAT	1 cut(s)	1243
MroI	TCCGGA	2 cut(s)	363, 974
MroXI	GAANNNNTTC	3 cut(s)	288, 815, 891
MseI	TTAA	5 cut(s)	171, 278, 383, 969, 1236
MslI	CAYNNNNRTG	1 cut(s)	1127
MspI	CCGG	2 cut(s)	364, 975
MvnI	CGCG	1 cut(s)	864
MwoI	GCNNNNNNNGC	1 cut(s)	870
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	5 cut(s)	596, 645, 775, 796, 1084
NlaIV	GGNNCC	4 cut(s)	217, 301, 355, 1096
NmuCI	GTSAC	2 cut(s)	777, 1025
NsiI	ATGCAT	1 cut(s)	1243
PagI	TCATGA	1 cut(s)	592
PaqCI	CACCTGC	1 cut(s)	1013
PdmI	GAANNNNTTC	3 cut(s)	288, 815, 891
PflMI	CCANNNNNTGG	1 cut(s)	1107
PkrI	GCNGC	2 cut(s)	863, 963
PleI	GAGTC	2 cut(s)	722, 1210
PpsI	GAGTC	2 cut(s)	722, 1210
PsiI	TTATAA	1 cut(s)	1127
Psp124BI	GAGCTC	1 cut(s)	456
PspN4I	GGNNCC	4 cut(s)	217, 301, 355, 1096
PstNI	CAGNNNCTG	1 cut(s)	653
RsaI	GTAC	3 cut(s)	797, 842, 1015
RsaNI	GTAC	3 cut(s)	796, 841, 1014
RseI	CAYNNNNRTG	1 cut(s)	1127
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	5 cut(s)	171, 278, 383, 969, 1236
SatI	GCNGC	2 cut(s)	862, 962
Sau3AI	GATC	1 cut(s)	261
SchI	GAGTC	2 cut(s)	722, 1211
SduI	GDGCHC	4 cut(s)	218, 456, 1188, 1222
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	1063
SmiMI	CAYNNNNRTG	1 cut(s)	1127
SmlI	CTYRAG	2 cut(s)	626, 1043
SmoI	CTYRAG	2 cut(s)	626, 1043
SsiI	CCGC	3 cut(s)	410, 862, 1087
SspI	AATATT	1 cut(s)	1195
SspMI	CTAG	2 cut(s)	200, 1019
SstI	GAGCTC	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	1090
TaaI	ACNGT	2 cut(s)	679, 1190
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	536, 895, 1200
TatI	WGTACW	1 cut(s)	795
TauI	GCSGC	1 cut(s)	864
Tru1I	TTAA	5 cut(s)	171, 278, 383, 969, 1236
Tru9I	TTAA	5 cut(s)	171, 278, 383, 969, 1236
TscAI	CASTG	4 cut(s)	654, 684, 703, 1193
TseFI	GTSAC	2 cut(s)	777, 1025
TseI	GCWGC	1 cut(s)	961
Tsp45I	GTSAC	2 cut(s)	777, 1025
TspDTI	ATGAA	9 cut(s)	17, 297, 581, 609, 630, 650, 717, 818, 1170
TspRI	CASTG	4 cut(s)	654, 684, 703, 1193
Van91I	CCANNNNNTGG	1 cut(s)	1107
VneI	GTGCAC	1 cut(s)	1218
XapI	RAATTY	7 cut(s)	14, 253, 596, 637, 888, 1000, 1159
XmnI	GAANNNNTTC	3 cut(s)	288, 815, 891
XspI	CTAG	2 cut(s)	200, 1019
Zsp2I	ATGCAT	1 cut(s)	1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.