Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Reverse (-)

13833545 .. 13835758

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATAGAGAATGGGGTTCCAAGCCTGGTAGTGGCGGCGCCGCCTCCGGCCAAAACGAGGCCATAGATCGCCGTGAGCGTCTCCGTCGTCTTGCTCTTGAAACCATAGACCTTGCTAAAGATCCGTATTTCATGCGAAATCATCTTGGAAGCTATGAGTGTAAACTATGTCTAACACTGCATAACAATGAAGGAAACTACTTGGCACATACTCAAGGTAAGAGGCATCAGACAAACTTGGCAAAGAGAGCTGCTCGAGAGGCTAAGGATGCTCCTACTAAGCCGCAGCCACTCAAGCGCAATGTCTCAGTTCGCAGAACAGTTAAAATTGGTAGACCAGGGTACCGGGTTACAAAACAGTATGATCCCGAGCTGCAACAAAGATCTCTTCTGTTCCAGATTGAATATCCTGAGATAGAGGACAACATAAAGCCAAGACATCGTTTCATGTCATCTTATGAGCAGAAAGTTCAACCTTATGACAAGAGCTATCAATACCTTCTATTTGCAGCCGAACCATATGAAATCATAGCTTTCAAGGTTCCTAGCACAGAGGTTGATAAATCAACCCCAAAGTTTTTCTCTCACTGGGATCCAGACTCCAAGATGTTTACACTGCAGGTGTATTTCAAGCCTACCAAGCCAGAACCAAACAAGCCTCAGTCAGCTGTTGGAGCAAATGGTCTTCCACCGCCACCACCACCCCCGCCTCATCAAGCTCAACCGCCACCACCACCTCCATCTGGTTTATTCCCACCGCCACCACCTCCAATGGCTAACAATGGTTTTAGGCCCATGCCACCAGCTGGAGGTTTCGGACATCCTAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

277

Amino Acids

31.37

Weight (kDa)

9.61

Isoelectric Point (pI)

60.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	52 - 76	8.6e-07	Zinc-finger of C2H2 type
SF3A2	PF16835	110 - 204	1.6e-37	Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
Acc36I	ACCTGC	1 cut(s)	610
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	38, 342
AccB7I	CCANNNNNTGG	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	334
AciI	CCGC	7 cut(s)	36, 42, 284, 692, 707, 725, 758
AclWI	GGATC	4 cut(s)	116, 359, 587, 600
AcoI	YGGCCR	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	5 cut(s)	32, 58, 743, 806, 809
AflIII	ACRYGT	1 cut(s)	828
AgsI	TTSAA	5 cut(s)	101, 404, 473, 538, 631
AjnI	CCWGG	2 cut(s)	25, 337
AluBI	AGCT	8 cut(s)	153, 251, 373, 489, 533, 668, 719, 806
AluI	AGCT	8 cut(s)	153, 251, 373, 489, 533, 668, 719, 806
Alw26I	GTCTC	2 cut(s)	86, 310
AlwI	GGATC	4 cut(s)	116, 359, 587, 600
Ama87I	CYCGRG	2 cut(s)	255, 368
AoxI	GGCC	3 cut(s)	49, 60, 791
ApeKI	GCWGC	4 cut(s)	251, 286, 373, 509
Asp718I	GGTACC	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	41, 300
AspS9I	GGNCC	1 cut(s)	792
AsuC2I	CCSGG	1 cut(s)	347
AvaI	CYCGRG	2 cut(s)	255, 368
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
BamHI	GGATCC	1 cut(s)	592
BanI	GGYRCC	2 cut(s)	38, 342
BbsI	GAAGAC	1 cut(s)	677
BbvI	GCAGC	4 cut(s)	238, 298, 360, 521
BccI	CCATC	1 cut(s)	748
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	2 cut(s)	27, 339
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	86, 310
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	617
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	7 cut(s)	37, 42, 252, 284, 287, 374, 510
BlsI	GCNGC	7 cut(s)	38, 43, 253, 285, 288, 375, 511
Bme1390I	CCNGG	3 cut(s)	27, 339, 347
BmeT110I	CYCGRG	2 cut(s)	255, 368
BmgT120I	GGNCC	1 cut(s)	792
BmiI	GGNNCC	5 cut(s)	19, 40, 344, 543, 594
BmrFI	CCNGG	3 cut(s)	27, 339, 347
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	2 cut(s)	235, 259
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	677
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
BpmI	CTGGAG	1 cut(s)	828
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	2 cut(s)	198, 278
BpuMI	CCSGG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 58, 743, 806, 809
Bse1I	ACTGG	1 cut(s)	593
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	2 cut(s)	27, 339
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	274, 820
BseLI	CCNNNNNNNGG	5 cut(s)	32, 58, 743, 806, 809
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	321, 402, 674
BseNI	ACTGG	1 cut(s)	593
BseXI	GCAGC	4 cut(s)	238, 298, 360, 521
BshFI	GGCC	3 cut(s)	51, 62, 793
BshNI	GGYRCC	2 cut(s)	38, 342
BsiHKCI	CYCGRG	2 cut(s)	255, 368
BsiSI	CCGG	2 cut(s)	48, 346
BslI	CCNNNNNNNGG	5 cut(s)	32, 58, 743, 806, 809
BsmAI	GTCTC	2 cut(s)	86, 310
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	51, 62, 793
BsoBI	CYCGRG	2 cut(s)	255, 368
Bsp143I	GATC	5 cut(s)	67, 121, 364, 383, 592
BspACI	CCGC	7 cut(s)	36, 42, 284, 692, 707, 725, 758
BspANI	GGCC	3 cut(s)	51, 62, 793
BspCNI	CTCAG	3 cut(s)	320, 403, 673
BspLI	GGNNCC	5 cut(s)	19, 40, 344, 543, 594
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	4 cut(s)	116, 359, 587, 600
BspT107I	GGYRCC	2 cut(s)	38, 342
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	5 cut(s)	67, 121, 364, 383, 592
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	27, 339
Bst4CI	ACNGT	2 cut(s)	322, 360
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	5 cut(s)	264, 279, 307, 411, 660
BstF5I	GGATG	2 cut(s)	274, 820
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 300
BstKTI	GATC	5 cut(s)	70, 124, 367, 386, 595
BstMAI	GTCTC	2 cut(s)	86, 310
BstMBI	GATC	5 cut(s)	67, 121, 364, 383, 592
BstMWI	GCNNNNNNNGC	6 cut(s)	248, 260, 269, 295, 640, 674
BstNI	CCWGG	2 cut(s)	27, 339
BstNSI	RCATGY	1 cut(s)	832
BstSCI	CCNGG	3 cut(s)	25, 337, 345
BstSFI	CTRYAG	1 cut(s)	617
BstV1I	GCAGC	4 cut(s)	238, 298, 360, 521
BstV2I	GAAGAC	1 cut(s)	677
BstX2I	RGATCY	3 cut(s)	121, 383, 592
BstYI	RGATCY	3 cut(s)	121, 383, 592
BsuRI	GGCC	3 cut(s)	51, 62, 793
BtsCI	GGATG	2 cut(s)	274, 820
BtsI	GCAGTG	2 cut(s)	176, 614
BtsIMutI	CAGTG	3 cut(s)	176, 586, 614
BveI	ACCTGC	1 cut(s)	610
CfoI	GCGC	2 cut(s)	41, 300
Cfr13I	GGNCC	1 cut(s)	792
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	4 cut(s)	133, 448, 796, 829
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	5 cut(s)	264, 279, 307, 411, 660
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	5 cut(s)	69, 123, 366, 385, 594
DpnII	GATC	5 cut(s)	67, 121, 364, 383, 592
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco88I	CYCGRG	2 cut(s)	255, 368
EcoRII	CCWGG	2 cut(s)	25, 337
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	4 cut(s)	136, 451, 799, 832
FatI	CATG	4 cut(s)	132, 447, 795, 828
FauI	CCCGC	1 cut(s)	714
FauNDI	CATATG	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	7 cut(s)	37, 42, 252, 284, 287, 374, 510
FokI	GGATG	2 cut(s)	281, 807
Fsp4HI	GCNGC	7 cut(s)	37, 42, 252, 284, 287, 374, 510
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	2 cut(s)	40, 299
GluI	GCNGC	7 cut(s)	37, 42, 252, 284, 287, 374, 510
GsuI	CTGGAG	1 cut(s)	828
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	51, 62, 793
HapII	CCGG	2 cut(s)	48, 346
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	41, 300
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	136, 451, 799, 832
Hin6I	GCGC	2 cut(s)	39, 298
HinP1I	GCGC	2 cut(s)	39, 298
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	2 cut(s)	48, 346
Hpy166II	GTNNAC	3 cut(s)	164, 335, 612
Hpy188I	TCNGA	2 cut(s)	231, 818
Hpy188III	TCNNGA	6 cut(s)	98, 257, 368, 397, 410, 596
Hpy8I	GTNNAC	3 cut(s)	164, 335, 612
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	2 cut(s)	185, 509
HpyCH4III	ACNGT	2 cut(s)	322, 360
HpyCH4V	TGCA	4 cut(s)	181, 376, 509, 619
HpyF10VI	GCNNNNNNNGC	6 cut(s)	248, 260, 269, 295, 640, 674
HpyF3I	CTNAG	5 cut(s)	264, 279, 307, 411, 660
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	136, 451, 799, 832
HspAI	GCGC	2 cut(s)	39, 298
KasI	GGCGCC	1 cut(s)	38
KpnI	GGTACC	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	67, 121, 364, 383, 592
LmnI	GCTCC	2 cut(s)	277, 674
Lsp1109I	GCAGC	4 cut(s)	238, 298, 360, 521
LweI	GCATC	2 cut(s)	235, 259
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	5 cut(s)	69, 123, 366, 385, 594
MboI	GATC	5 cut(s)	67, 121, 364, 383, 592
MboII	GAAGA	2 cut(s)	380, 677
MflI	RGATCY	3 cut(s)	121, 383, 592
MluCI	AATT	1 cut(s)	327
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	652
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	2 cut(s)	668, 806
MspI	CCGG	2 cut(s)	48, 346
MspR9I	CCNGG	3 cut(s)	27, 339, 347
MvaI	CCWGG	2 cut(s)	27, 339
MwoI	GCNNNNNNNGC	6 cut(s)	248, 260, 269, 295, 640, 674
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	347
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	5 cut(s)	67, 121, 364, 383, 592
NlaIII	CATG	4 cut(s)	136, 451, 799, 832
NlaIV	GGNNCC	5 cut(s)	19, 40, 344, 543, 594
NspI	RCATGY	1 cut(s)	832
PaeR7I	CTCGAG	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	610
PciI	ACATGT	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	806
PkrI	GCNGC	7 cut(s)	38, 43, 253, 285, 288, 375, 511
PleI	GAGTC	1 cut(s)	593
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	593
PscI	ACATGT	1 cut(s)	828
Psp6I	CCWGG	2 cut(s)	25, 337
PspGI	CCWGG	2 cut(s)	25, 337
PspN4I	GGNNCC	5 cut(s)	19, 40, 344, 543, 594
PspPI	GGNCC	1 cut(s)	792
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	3 cut(s)	121, 383, 592
PvuII	CAGCTG	2 cut(s)	668, 806
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	7 cut(s)	37, 42, 252, 284, 287, 374, 510
Sau3AI	GATC	5 cut(s)	67, 121, 364, 383, 592
Sau96I	GGNCC	1 cut(s)	792
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	3 cut(s)	27, 339, 347
SfaNI	GCATC	2 cut(s)	235, 259
SfcI	CTRYAG	1 cut(s)	617
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	3 cut(s)	213, 255, 293
SmoI	CTYRAG	3 cut(s)	213, 255, 293
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	7 cut(s)	36, 42, 284, 692, 707, 725, 758
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	3 cut(s)	25, 337, 345
TaaI	ACNGT	2 cut(s)	322, 360
TaqI	TCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	327
TauI	GCSGC	3 cut(s)	39, 44, 286
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	3 cut(s)	183, 593, 621
TseI	GCWGC	4 cut(s)	251, 286, 373, 509
TspDTI	ATGAA	4 cut(s)	121, 204, 436, 537
TspGWI	ACGGA	2 cut(s)	74, 114
TspRI	CASTG	3 cut(s)	183, 593, 621
Van91I	CCANNNNNTGG	1 cut(s)	806
XceI	RCATGY	1 cut(s)	832
XhoI	CTCGAG	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	334
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.