Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Reverse (-)

49114523 .. 49115108

Gene Structure 586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGAATAAGGGCCCAAATGAAGCTATCGACCAGCGAGAGCGAGGACTCGCCGTCAAGACAATTGATCTGACGAAGAATCCAGACTGGAAAGCGCCACTAGATGAATCTGGCGTCAAGGAAGCTCCTGCTCAGCCGCAGACCCACAAGCGCAAAGTCTCCACTACCAAGACACTGAAAATTGGCAGAGCGGAGTATAGAGTTACGAAACAATTTGATGGAAAGGGAAAGCAGAGGTCTCTTCTCTTCCAGATTGAATATATTCATAGAAGACGATGCAAAGCTAAGGCATCGTTTTATGTCATCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

104

Amino Acids

11.83

Weight (kDa)

10.05

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	2 cut(s)	137, 191
AcyI	GRCGYC	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	257
AhdI	GACNNNNNGTC	1 cut(s)	53
AluBI	AGCT	3 cut(s)	26, 125, 284
AluI	AGCT	3 cut(s)	26, 125, 284
Alw26I	GTCTC	2 cut(s)	163, 243
AoxI	GGCC	1 cut(s)	13
ApaI	GGGCCC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	2 cut(s)	97, 153
AspS9I	GGNCC	2 cut(s)	13, 14
BaeGI	GKGCMC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	277
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	163, 243
BfaI	CTAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	98
BisI	GCNGC	1 cut(s)	137
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	138
BmeRI	GACNNNNNGTC	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	13, 14
BmiI	GGNNCC	1 cut(s)	15
BmsI	GCATC	2 cut(s)	266, 299
BpiI	GAAGAC	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	15
BsmAI	GTCTC	2 cut(s)	163, 243
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	243
Bsp120I	GGGCCC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	67
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	137, 191
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	92
BssMI	GATC	1 cut(s)	67
BssNI	GRCGYC	1 cut(s)	114
Bst6I	CTCTTC	2 cut(s)	246, 251
BstACI	GRCGYC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	132, 285
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	97, 153
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	2 cut(s)	163, 243
BstMBI	GATC	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	173
CfoI	GCGC	2 cut(s)	97, 153
Cfr13I	GGNCC	2 cut(s)	13, 14
CseI	GACGC	1 cut(s)	103
CviJI	RGCY	5 cut(s)	15, 26, 125, 136, 284
CviKI_1	RGCY	5 cut(s)	15, 26, 125, 136, 284
DdeI	CTNAG	2 cut(s)	132, 285
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DriI	GACNNNNNGTC	1 cut(s)	53
Eam1104I	CTCTTC	2 cut(s)	246, 251
Eam1105I	GACNNNNNGTC	1 cut(s)	53
EarI	CTCTTC	2 cut(s)	246, 251
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	17
FaiI	YATR	4 cut(s)	198, 261, 267, 300
Fnu4HI	GCNGC	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	2 cut(s)	96, 152
GluI	GCNGC	1 cut(s)	137
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	15
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	2 cut(s)	97, 153
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	2 cut(s)	95, 151
HinP1I	GCGC	2 cut(s)	95, 151
HinfI	GANTC	3 cut(s)	48, 79, 107
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	4 cut(s)	58, 83, 250, 309
HpyCH4V	TGCA	1 cut(s)	279
HpyF3I	CTNAG	2 cut(s)	132, 285
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	2 cut(s)	95, 151
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	6 cut(s)	47, 73, 96, 96, 141, 263
LweI	GCATC	2 cut(s)	266, 299
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	69
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	1 cut(s)	67
MboII	GAAGA	4 cut(s)	88, 233, 238, 282
MfeI	CAATTG	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	3 cut(s)	63, 180, 212
MlyI	GAGTC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	38, 228
MroXI	GAANNNNTTC	1 cut(s)	261
MunI	CAATTG	1 cut(s)	63
NdeII	GATC	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	79, 107
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	15
PspOMI	GGGCCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	13, 14
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	2 cut(s)	13, 14
SchI	GAGTC	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	4 cut(s)	28, 127, 239, 286
SfaNI	GCATC	2 cut(s)	266, 299
Sse9I	AATT	3 cut(s)	63, 180, 212
SsiI	CCGC	2 cut(s)	137, 191
SspMI	CTAG	1 cut(s)	101
TaqI	TCGA	1 cut(s)	30
TasI	AATT	3 cut(s)	63, 180, 212
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	79, 107
TscAI	CASTG	1 cut(s)	180
TspDTI	ATGAA	3 cut(s)	36, 120, 254
TspRI	CASTG	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.