Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8030388.1

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 546

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8030388.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

attgagtatcctgagatagaagataatgcaaagccaaggcatcgttttatgtcgtcttatgagcagagggtccagcccttcgagaaaagataccagtatcttctgtttgcagccgaaccatacgagataattgcttttaaggttccgagtacagagattgacaaatcaactccgaagttcttttcacattgggatccagactccaaaatgttcacggttagttctatgatcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

78

Amino Acids

9.38

Weight (kDa)

5.62

Isoelectric Point (pI)

67.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	188, 201, 223
AfaI	GTAC	1 cut(s)	151
AlwI	GGATC	3 cut(s)	188, 201, 223
ApeKI	GCWGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	70
BamHI	GGATCC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BciVI	GTATCC	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	3 cut(s)	71, 144, 195
BmsI	GCATC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	193, 228
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	3 cut(s)	71, 144, 195
BspPI	GGATC	3 cut(s)	188, 201, 223
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	193, 228
BssT1I	CCWWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	196, 231
BstMBI	GATC	2 cut(s)	193, 228
BstV1I	GCAGC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	150
CviJI	RGCY	3 cut(s)	34, 76, 113
CviKI_1	RGCY	3 cut(s)	34, 76, 113
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	195, 230
DpnII	GATC	2 cut(s)	193, 228
Eco130I	CCWWGG	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaiI	YATR	4 cut(s)	50, 60, 121, 227
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	147, 174
Hpy188III	TCNNGA	3 cut(s)	11, 82, 197
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	2 cut(s)	29, 110
HpyF3I	CTNAG	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	193, 228
LpnPI	CCDG	4 cut(s)	24, 86, 107, 210
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	49
MalI	GATC	2 cut(s)	195, 230
MboI	GATC	2 cut(s)	193, 228
MboII	GAAGA	2 cut(s)	32, 92
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	1 cut(s)	60
MseI	TTAA	1 cut(s)	138
NdeII	GATC	2 cut(s)	193, 228
NlaIV	GGNNCC	3 cut(s)	71, 144, 195
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	71, 144, 195
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	193, 228
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	194
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	49
SgeI	CNNG	9 cut(s)	23, 48, 85, 94, 106, 136, 159, 209, 226
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	129
TatI	WGTACW	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TseI	GCWGC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.