Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Forward (+)

47364989 .. 47375803

Gene Structure 10815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAATGCGGCGCAACGAGCGGTGCGTGAGGTCAAGGAAGCTCTGCTCGGCCGCAGCCCCACAAGCGCAAAGTCTCCACTTCCAAGACAACGAAAATTGGCAGCGGAGTATAGAGTTACGAAACAATTTGATGGAGAGGGAAAGAAGAGGTCTCTTCTCTTCCGGATTGAATATATTCATAGAAGACGATGCAAGGCGAGGCATCGTTTCATGTCATCTCCCGAGCAAAGGTATATATCCGATGGCATAAAGTTTTCTCCAACCATATTGGAGGCACTTAGTGCTACAATATTTCAAATTAGCTCACCTATACGGCTTGTAGACCAAAGGAAATCAGTTGTTTTGCATGATACGACCAAACAAAAAAAATTTCTCACTGCAAGTCTTGCAAATGTGAACGGTGGTCTAGCATGTAAAATGGTCATGATGGATCAAACTCCAAGGGTATGTGTGAGAAGATCTTCTGGAAGCAAAGGAATAATAGGCAGATTCTACTGGTGGACTTGGGCCAGTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

172

Amino Acids

19.7

Weight (kDa)

10.98

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	4 cut(s)	8, 20, 52, 104
AclWI	GGATC	1 cut(s)	438
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	368
AdeI	CACNNNGTG	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	2 cut(s)	170, 296
AluBI	AGCT	2 cut(s)	41, 303
AluI	AGCT	2 cut(s)	41, 303
Alw26I	GTCTC	2 cut(s)	78, 156
AlwI	GGATC	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	2 cut(s)	49, 507
ApeKI	GCWGC	2 cut(s)	54, 101
ApoI	RAATTY	1 cut(s)	368
Asp700I	GAANNNNTTC	2 cut(s)	174, 460
AspLEI	GCGC	2 cut(s)	13, 68
AspS9I	GGNCC	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	297
AvaI	CYCGRG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	190
BbvI	GCAGC	2 cut(s)	66, 113
BccI	CCATC	3 cut(s)	125, 236, 421
BceAI	ACGGC	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	78, 156
BfaI	CTAG	1 cut(s)	407
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	4 cut(s)	9, 52, 55, 102
BlsI	GCNGC	4 cut(s)	10, 53, 56, 103
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	507
BmsI	GCATC	2 cut(s)	179, 211
BpiI	GAAGAC	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	500, 510
BseAI	TCCGGA	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	500, 510
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	66, 113
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	51, 509
BsiEI	CGRYCG	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	78, 156
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	51, 509
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	221
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	430, 458
BspACI	CCGC	4 cut(s)	8, 20, 52, 104
BspANI	GGCC	2 cut(s)	51, 509
BspEI	TCCGGA	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	423
BspPI	GGATC	1 cut(s)	438
BspTNI	GGTCTC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	2 cut(s)	500, 510
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	2 cut(s)	430, 458
BssT1I	CCWWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	3 cut(s)	140, 159, 164
BstAPI	GCANNNNNTGC	2 cut(s)	281, 386
BstDEI	CTNAG	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	13, 68
BstKTI	GATC	2 cut(s)	433, 461
BstMAI	GTCTC	2 cut(s)	78, 156
BstMBI	GATC	2 cut(s)	430, 458
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 63, 281, 386
BstNSI	RCATGY	1 cut(s)	414
BstV1I	GCAGC	2 cut(s)	66, 113
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
BstZI	CGGCCG	1 cut(s)	49
BsuRI	GGCC	2 cut(s)	51, 509
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	2 cut(s)	13, 68
Cfr13I	GGNCC	1 cut(s)	507
CviAII	CATG	4 cut(s)	211, 347, 411, 424
CviJI	RGCY	6 cut(s)	41, 51, 57, 303, 316, 509
CviKI_1	RGCY	6 cut(s)	41, 51, 57, 303, 316, 509
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	2 cut(s)	432, 460
DpnII	GATC	2 cut(s)	430, 458
DraIII	CACNNNGTG	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	49
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	3 cut(s)	140, 159, 164
EarI	CTCTTC	3 cut(s)	140, 159, 164
EclXI	CGGCCG	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	440
Eco31I	GGTCTC	1 cut(s)	156
Eco52I	CGGCCG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	4 cut(s)	214, 350, 414, 427
FatI	CATG	4 cut(s)	210, 346, 410, 423
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	9, 52, 55, 102
Fsp4HI	GCNGC	4 cut(s)	9, 52, 55, 102
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	2 cut(s)	12, 67
GluI	GCNGC	4 cut(s)	9, 52, 55, 102
HaeIII	GGCC	2 cut(s)	51, 509
HapII	CCGG	1 cut(s)	163
HhaI	GCGC	2 cut(s)	13, 68
Hin1II	CATG	4 cut(s)	214, 350, 414, 427
Hin6I	GCGC	2 cut(s)	11, 66
HinP1I	GCGC	2 cut(s)	11, 66
HinfI	GANTC	1 cut(s)	489
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	3 cut(s)	322, 397, 501
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	4 cut(s)	163, 221, 424, 465
Hpy8I	GTNNAC	3 cut(s)	322, 397, 501
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	4 cut(s)	192, 346, 380, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 63, 281, 386
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	4 cut(s)	214, 350, 414, 427
HspAI	GCGC	2 cut(s)	11, 66
Kpn2I	TCCGGA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	430, 458
LpnPI	CCDG	3 cut(s)	176, 450, 481
Lsp1109I	GCAGC	2 cut(s)	66, 113
LweI	GCATC	2 cut(s)	179, 211
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	432, 460
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	430, 458
MboII	GAAGA	6 cut(s)	146, 151, 157, 195, 453, 468
MflI	RGATCY	1 cut(s)	458
MluCI	AATT	4 cut(s)	95, 125, 297, 368
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	22, 130, 141, 192, 265
MroI	TCCGGA	1 cut(s)	162
MroXI	GAANNNNTTC	2 cut(s)	174, 460
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	4 cut(s)	17, 63, 281, 386
NdeII	GATC	2 cut(s)	430, 458
NlaIII	CATG	4 cut(s)	214, 350, 414, 427
NmeAIII	GCCGAG	1 cut(s)	27
NspI	RCATGY	1 cut(s)	414
PagI	TCATGA	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	174, 460
PfeI	GAWTC	1 cut(s)	489
PkrI	GCNGC	4 cut(s)	10, 53, 56, 103
PspPI	GGNCC	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	458
SatI	GCNGC	4 cut(s)	9, 52, 55, 102
Sau3AI	GATC	2 cut(s)	430, 458
Sau96I	GGNCC	1 cut(s)	507
SetI	ASST	6 cut(s)	33, 43, 152, 233, 305, 310
SfaNI	GCATC	2 cut(s)	179, 211
Sse9I	AATT	4 cut(s)	95, 125, 297, 368
SsiI	CCGC	4 cut(s)	8, 20, 52, 104
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	401
TasI	AATT	4 cut(s)	95, 125, 297, 368
TauI	GCSGC	2 cut(s)	11, 54
TfiI	GAWTC	1 cut(s)	489
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	54, 101
TspDTI	ATGAA	3 cut(s)	17, 167, 199
TspRI	CASTG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	2 cut(s)	174, 460
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.