Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Reverse (-)

9301802 .. 9302128

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGACCGAGAGTGGGGTTCAAAGCCCGGCGGTGGAGGCGCCGCCTCCGCCCAGAACGAAGCCATCGACCGCCGAGAGCGACTCCGACGACTTGCCCTCGAGACCATTGATCTCGCCAAAGATCCATACTTCATGCGCAATCACCTCGGAAGCTATGAGTGTAAACTTTGCTTGACCTTGCACAACAATGAGGGTAACTACTTAGCCCATACACAGGGAAAGCGCCACCAGACCTATCTCGCCAAGCGGGCCGCGCGTGAGGCCAAGGATATTCCTGCTCAGCCCCAGCCCCACAAGCGCAAAGTCTCCGTTCGCAAAACAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

108

Amino Acids

12.29

Weight (kDa)

9.95

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	52 - 76	2.1e-07	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	38
AccII	CGCG	2 cut(s)	254, 256
AciI	CCGC	6 cut(s)	30, 42, 48, 70, 247, 252
AclWI	GGATC	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	3 cut(s)	13, 32, 214
AgsI	TTSAA	1 cut(s)	21
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	95, 310
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	249, 261
AspLEI	GCGC	5 cut(s)	41, 138, 225, 256, 300
AspS9I	GGNCC	2 cut(s)	4, 249
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	38
BccI	CCATC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	95, 310
BfoI	RGCGCY	2 cut(s)	42, 226
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	42, 252
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	2 cut(s)	43, 253
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	4, 249
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	27
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	145, 264
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 32, 214
BseDI	CCNNGG	2 cut(s)	145, 264
BseLI	CCNNNNNNNGG	3 cut(s)	13, 32, 214
BseMII	CTCAG	1 cut(s)	293
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	2 cut(s)	254, 256
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	251, 263
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	3 cut(s)	13, 32, 214
BsmAI	GTCTC	2 cut(s)	95, 310
BsnI	GGCC	2 cut(s)	251, 263
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	109, 121
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	6 cut(s)	30, 42, 48, 70, 247, 252
BspANI	GGCC	2 cut(s)	251, 263
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	2 cut(s)	254, 256
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	145, 264
BssMI	GATC	2 cut(s)	109, 121
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	202, 279
BstFNI	CGCG	2 cut(s)	254, 256
BstH2I	RGCGCY	2 cut(s)	42, 226
BstHHI	GCGC	5 cut(s)	41, 138, 225, 256, 300
BstKTI	GATC	2 cut(s)	112, 124
BstMAI	GTCTC	2 cut(s)	95, 310
BstMBI	GATC	2 cut(s)	109, 121
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 47, 248, 253, 260, 295
BstSCI	CCNGG	1 cut(s)	25
BstUI	CGCG	2 cut(s)	254, 256
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	251, 263
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	5 cut(s)	41, 138, 225, 256, 300
Cfr13I	GGNCC	2 cut(s)	4, 249
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	8 cut(s)	25, 62, 153, 206, 251, 263, 283, 289
CviKI_1	RGCY	8 cut(s)	25, 62, 153, 206, 251, 263, 283, 289
DdeI	CTNAG	2 cut(s)	202, 279
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	2 cut(s)	111, 123
DpnII	GATC	2 cut(s)	109, 121
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	264
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	136
FaiI	YATR	4 cut(s)	127, 134, 156, 210
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	42, 252
Fsp4HI	GCNGC	2 cut(s)	42, 252
FspI	TGCGCA	1 cut(s)	137
GlaI	GCGC	5 cut(s)	40, 137, 224, 255, 299
GluI	GCNGC	2 cut(s)	42, 252
GsaI	CCCAGC	1 cut(s)	289
HaeII	RGCGCY	2 cut(s)	42, 226
HaeIII	GGCC	2 cut(s)	251, 263
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	5 cut(s)	41, 138, 225, 256, 300
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	5 cut(s)	39, 136, 223, 254, 298
HinP1I	GCGC	5 cut(s)	39, 136, 223, 254, 298
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	86, 149
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 47, 248, 253, 260, 295
HpyF3I	CTNAG	2 cut(s)	202, 279
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	5 cut(s)	39, 136, 223, 254, 298
KasI	GGCGCC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	109, 121
LpnPI	CCDG	6 cut(s)	40, 65, 200, 242, 288, 299
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	2 cut(s)	111, 123
MboI	GATC	2 cut(s)	109, 121
MflI	RGATCY	1 cut(s)	121
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	6 cut(s)	29, 55, 107, 155, 184, 253
MslI	CAYNNNNRTG	1 cut(s)	186
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	27
MvnI	CGCG	2 cut(s)	254, 256
MwoI	GCNNNNNNNGC	6 cut(s)	36, 47, 248, 253, 260, 295
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	109, 121
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	40
NmeAIII	GCCGAG	1 cut(s)	98
NsbI	TGCGCA	1 cut(s)	137
PaeR7I	CTCGAG	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	43, 253
PleI	GAGTC	1 cut(s)	75
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	4, 249
PsuI	RGATCY	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	186
SatI	GCNGC	2 cut(s)	42, 252
Sau3AI	GATC	2 cut(s)	109, 121
Sau96I	GGNCC	2 cut(s)	4, 249
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	4 cut(s)	147, 155, 179, 236
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
SsiI	CCGC	6 cut(s)	30, 42, 48, 70, 247, 252
SspDI	GGCGCC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	66, 99
TaqII	GACCGA	1 cut(s)	21
TauI	GCSGC	2 cut(s)	44, 254
TscAI	CASTG	1 cut(s)	327
TspDTI	ATGAA	1 cut(s)	121
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.