Prupe.7G125300_v2.0.a1

splicing factor 3A subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
14733949 .. 14736351
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G125300.2

Sequence Viewer

Length: 1047 bp
ATGGACAGAGAATGGGGTTCGAAGCCCGGCAGCGGAGGGGCCGCCTCCGCCCAAAACGAAGCCATCGACCGCCGAGAGCGTCTCCGGAGACTCGCCCTCGAGACCATCGATCTCGCCAAAGATCCCTACTTCATGCGCAACCACCTTGGAAGCTATGAGTGTAAGCTTTGCTTGACGCTGCACAACAACGAGGGCAACTACTTGGCCCATACACAGGGGAAGCGCCATCAGACTAACTTGGCAAAGCGAGCTGCTCGTGAGGCCAAGGAGGCTCCTGCTCAACCCCAGCCTCACAAACGCAAAGTCAACTTGCGAAAGACAGTTAAAATTGGTAGGCCGGGGTATCGAGTGACAAAGCAGTTCGATGGAGAATTAAAGCAGAGGTCTCTTCTCTTCCAGATTGAATATCCTGAGATTGAAGATAGTACAAAGCCTAGGCACCGTTTTATGTCATCTTATGAGCAGGTAGGAGTTCAATCTGTCGACAAAAGATACCAGTATCTCCTCTTCGCAGCCGAACCATATGAGATAATTGCTTTCAAGGTTCCTAGTACAGAGATTGACAAAACCCCTGAAAAGTTTTTCTCACATTGGGATCCAGACTCAAAAATGTTCACATTGCAGCTATATTTCAAAACTAAGCCACCAGAGACAAACAAACCGCAACCTCCCCCTGCAGCCAATGGCCCGGGTGCTCCTGGTGTTCCATCAAGGCCTTTGCCCCCACCACCCCAAGCTCCACCCCCACCTCCTCCACAAGGACTGCCACCTGGTGCACCAATGGGAAATCCTCCTAGACCACCTCCGCCGATTCATGGATCTTTACTGCCTCCTCCTCCGATGGGAAATGGCCCTAGGCCTATGCCTCCTGGTGGAGCTCCTCCTGCCCCTCCTCCACCCCCAGTTGGTAATAACACAATGGCAAATTTCACTCCTGGCACTCAGATGGGAAGACCTCAATCAATGCCACCTCCACAAGGCTTTCCAGGACAACAAATGCAGGGTCAGGGTCTTCGTCCACCCCCACCACCTCCTAACATGGGCTAA

Protein Analysis

349

Amino Acids

38.31

Weight (kDa)

9.86

Isoelectric Point (pI)

67.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 438
AccI GTMKAC 1 cut(s) 483
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 6 cut(s) 33, 42, 48, 70, 662, 806
AclWI GGATC 4 cut(s) 116, 590, 603, 826
AcsI RAATTY 1 cut(s) 925
AdeI CACNNNGTG 1 cut(s) 773
AfaI GTAC 2 cut(s) 427, 553
AfiI CCNNNNNNNGG 9 cut(s) 32, 214, 758, 815, 842, 872, 905, 977, 1040
AgsI TTSAA 5 cut(s) 404, 419, 476, 541, 634
AjnI CCWGG 5 cut(s) 697, 769, 868, 934, 985
AluBI AGCT 6 cut(s) 153, 166, 251, 625, 737, 878
AluI AGCT 6 cut(s) 153, 166, 251, 625, 737, 878
Alw21I GWGCWC 3 cut(s) 697, 778, 880
Alw26I GTCTC 5 cut(s) 82, 86, 95, 390, 644
Alw44I GTGCAC 1 cut(s) 774
AlwI GGATC 4 cut(s) 116, 590, 603, 826
Ama87I CYCGRG 2 cut(s) 98, 688
Aor13HI TCCGGA 1 cut(s) 84
AoxI GGCC 8 cut(s) 39, 204, 261, 335, 685, 713, 850, 857
ApaLI GTGCAC 1 cut(s) 774
ApeKI GCWGC 6 cut(s) 30, 178, 251, 512, 622, 677
ApoI RAATTY 1 cut(s) 925
ArsI GACNNNNNNTTYG 4 cut(s) 288, 320, 988, 1020
AspA2I CCTAGG 2 cut(s) 434, 854
AspLEI GCGC 2 cut(s) 138, 225
AspS9I GGNCC 4 cut(s) 39, 205, 686, 851
AsuC2I CCSGG 4 cut(s) 27, 339, 689, 690
AsuII TTCGAA 1 cut(s) 20
AvaI CYCGRG 2 cut(s) 98, 688
AvrII CCTAGG 2 cut(s) 434, 854
BaeGI GKGCMC 1 cut(s) 778
BamHI GGATCC 1 cut(s) 595
BanI GGYRCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 880
BarI GAAGNNNNNNTAC 2 cut(s) 491, 523
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 2 cut(s) 958, 1004
Bbv12I GWGCWC 3 cut(s) 697, 778, 880
BbvI GCAGC 6 cut(s) 42, 165, 238, 524, 634, 689
BccI CCATC 7 cut(s) 71, 113, 234, 359, 715, 835, 940
BciT130I CCWGG 5 cut(s) 699, 771, 870, 936, 987
BcnI CCSGG 4 cut(s) 27, 339, 689, 690
BcoDI GTCTC 5 cut(s) 82, 86, 95, 390, 644
BfaI CTAG 4 cut(s) 435, 549, 795, 855
BfmI CTRYAG 1 cut(s) 675
BfoI RGCGCY 1 cut(s) 226
BfuAI ACCTGC 1 cut(s) 454
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 7 cut(s) 31, 42, 179, 252, 513, 623, 678
BlnI CCTAGG 2 cut(s) 434, 854
BlsI GCNGC 7 cut(s) 32, 43, 180, 253, 514, 624, 679
Bme1390I CCNGG 9 cut(s) 27, 339, 689, 690, 699, 771, 870, 936, 987
BmeT110I CYCGRG 2 cut(s) 98, 688
BmgT120I GGNCC 4 cut(s) 39, 205, 686, 851
BmiI GGNNCC 5 cut(s) 40, 273, 440, 546, 597
BmrFI CCNGG 9 cut(s) 27, 339, 689, 690, 699, 771, 870, 936, 987
BmrI ACTGGG 1 cut(s) 896
BmuI ACTGGG 1 cut(s) 896
BpiI GAAGAC 2 cut(s) 958, 1004
BplI GAGNNNNNCTC 2 cut(s) 66, 98
Bpu14I TTCGAA 1 cut(s) 20
BpuMI CCSGG 4 cut(s) 27, 339, 689, 690
Bsa29I ATCGAT 1 cut(s) 108
BsaI GGTCTC 2 cut(s) 95, 390
BsaJI CCNNGG 6 cut(s) 145, 264, 338, 434, 688, 854
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 9 cut(s) 32, 214, 758, 815, 842, 872, 905, 977, 1040
Bse1I ACTGG 2 cut(s) 496, 902
Bse3DI GCAATG 1 cut(s) 617
BseAI TCCGGA 1 cut(s) 84
BseBI CCWGG 5 cut(s) 699, 771, 870, 936, 987
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 6 cut(s) 145, 264, 338, 434, 688, 854
BseLI CCNNNNNNNGG 9 cut(s) 32, 214, 758, 815, 842, 872, 905, 977, 1040
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 2 cut(s) 402, 956
BseNI ACTGG 2 cut(s) 496, 902
BseRI GAGGAG 6 cut(s) 494, 741, 822, 825, 870, 882
BseSI GKGCMC 1 cut(s) 778
BseXI GCAGC 6 cut(s) 42, 165, 238, 524, 634, 689
BseYI CCCAGC 1 cut(s) 285
BsgI GTGCAG 1 cut(s) 164
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 8 cut(s) 41, 206, 263, 337, 687, 715, 852, 859
BshNI GGYRCC 1 cut(s) 438
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 70
BsiHKAI GWGCWC 3 cut(s) 697, 778, 880
BsiHKCI CYCGRG 2 cut(s) 98, 688
BsiSI CCGG 4 cut(s) 27, 85, 338, 689
BslI CCNNNNNNNGG 9 cut(s) 32, 214, 758, 815, 842, 872, 905, 977, 1040
BsmAI GTCTC 5 cut(s) 82, 86, 95, 390, 644
BsmBI CGTCTC 1 cut(s) 86
BsnI GGCC 8 cut(s) 41, 206, 263, 337, 687, 715, 852, 859
Bso31I GGTCTC 2 cut(s) 95, 390
BsoBI CYCGRG 2 cut(s) 98, 688
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 3 cut(s) 697, 778, 880
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 4 cut(s) 109, 121, 595, 818
BspACI CCGC 6 cut(s) 33, 42, 48, 70, 662, 806
BspANI GGCC 8 cut(s) 41, 206, 263, 337, 687, 715, 852, 859
BspCNI CTCAG 2 cut(s) 403, 955
BspDI ATCGAT 1 cut(s) 108
BspEI TCCGGA 1 cut(s) 84
BspLI GGNNCC 5 cut(s) 40, 273, 440, 546, 597
BspMAI CTGCAG 1 cut(s) 679
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 4 cut(s) 116, 590, 603, 826
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 438
BspTNI GGTCTC 2 cut(s) 95, 390
BsrDI GCAATG 1 cut(s) 617
BsrI ACTGG 2 cut(s) 496, 902
BssECI CCNNGG 6 cut(s) 145, 264, 338, 434, 688, 854
BssMI GATC 4 cut(s) 109, 121, 595, 818
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 4 cut(s) 145, 264, 434, 854
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 5 cut(s) 699, 771, 870, 936, 987
Bst4CI ACNGT 2 cut(s) 322, 443
Bst6I CTCTTC 3 cut(s) 393, 398, 512
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 411, 639, 942
BstENI CCTNNNNNAGG 2 cut(s) 756, 975
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 2 cut(s) 138, 225
BstKTI GATC 4 cut(s) 112, 124, 598, 821
BstMAI GTCTC 5 cut(s) 82, 86, 95, 390, 644
BstMBI GATC 4 cut(s) 109, 121, 595, 818
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 5 cut(s) 47, 248, 260, 269, 884
BstNI CCWGG 5 cut(s) 699, 771, 870, 936, 987
BstSCI CCNGG 9 cut(s) 25, 337, 687, 688, 697, 769, 868, 934, 985
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 778
BstV1I GCAGC 6 cut(s) 42, 165, 238, 524, 634, 689
BstV2I GAAGAC 2 cut(s) 958, 1004
BstX2I RGATCY 3 cut(s) 121, 595, 818
BstYI RGATCY 3 cut(s) 121, 595, 818
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 8 cut(s) 41, 206, 263, 337, 687, 715, 852, 859
BsuTUI ATCGAT 1 cut(s) 108
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 2 cut(s) 138, 225
Cfr13I GGNCC 4 cut(s) 39, 205, 686, 851
Cfr9I CCCGGG 1 cut(s) 688
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 2 cut(s) 68, 184
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 2 cut(s) 426, 552
CviAII CATG 3 cut(s) 133, 815, 1039
CviQI GTAC 2 cut(s) 426, 552
DdeI CTNAG 3 cut(s) 411, 639, 942
DpnI GATC 4 cut(s) 111, 123, 597, 820
DpnII GATC 4 cut(s) 109, 121, 595, 818
DraIII CACNNNGTG 1 cut(s) 773
Eam1104I CTCTTC 3 cut(s) 393, 398, 512
EarI CTCTTC 3 cut(s) 393, 398, 512
EciI GGCGGA 2 cut(s) 37, 795
Ecl136II GAGCTC 1 cut(s) 878
Eco130I CCWWGG 4 cut(s) 145, 264, 434, 854
Eco147I AGGCCT 2 cut(s) 715, 859
Eco24I GRGCYC 1 cut(s) 880
Eco31I GGTCTC 2 cut(s) 95, 390
Eco53kI GAGCTC 1 cut(s) 878
Eco88I CYCGRG 2 cut(s) 98, 688
EcoICRI GAGCTC 1 cut(s) 878
EcoNI CCTNNNNNAGG 2 cut(s) 756, 975
EcoRII CCWGG 5 cut(s) 697, 769, 868, 934, 985
EcoT14I CCWWGG 4 cut(s) 145, 264, 434, 854
EcoT38I GRGCYC 1 cut(s) 880
ErhI CCWWGG 4 cut(s) 145, 264, 434, 854
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 136, 818, 1042
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FatI CATG 3 cut(s) 132, 814, 1038
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 7 cut(s) 31, 42, 179, 252, 513, 623, 678
FriOI GRGCYC 1 cut(s) 880
Fsp4HI GCNGC 7 cut(s) 31, 42, 179, 252, 513, 623, 678
FspBI CTAG 4 cut(s) 435, 549, 795, 855
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 2 cut(s) 137, 224
GluI GCNGC 7 cut(s) 31, 42, 179, 252, 513, 623, 678
GsaI CCCAGC 1 cut(s) 289
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 8 cut(s) 41, 206, 263, 337, 687, 715, 852, 859
HapII CCGG 4 cut(s) 27, 85, 338, 689
HgaI GACGC 2 cut(s) 68, 184
HhaI GCGC 2 cut(s) 138, 225
Hin1II CATG 3 cut(s) 136, 818, 1042
Hin6I GCGC 2 cut(s) 136, 223
HinP1I GCGC 2 cut(s) 136, 223
HincII GTYRAC 2 cut(s) 307, 484
HindII GTYRAC 2 cut(s) 307, 484
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 3 cut(s) 90, 602, 811
HpaII CCGG 4 cut(s) 27, 85, 338, 689
Hpy166II GTNNAC 5 cut(s) 307, 484, 615, 776, 1019
Hpy188I TCNGA 3 cut(s) 231, 840, 945
Hpy188III TCNNGA 6 cut(s) 85, 100, 257, 397, 410, 599
Hpy8I GTNNAC 5 cut(s) 307, 484, 615, 776, 1019
HpyCH4III ACNGT 2 cut(s) 322, 443
HpyCH4V TGCA 5 cut(s) 181, 622, 677, 776, 1000
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 248, 260, 269, 884
HpyF3I CTNAG 3 cut(s) 411, 639, 942
Hsp92II CATG 3 cut(s) 136, 818, 1042
HspAI GCGC 2 cut(s) 136, 223
Kpn2I TCCGGA 1 cut(s) 84
Kzo9I GATC 4 cut(s) 109, 121, 595, 818
LmnI GCTCC 5 cut(s) 277, 700, 742, 875, 883
Lsp1109I GCAGC 6 cut(s) 42, 165, 238, 524, 634, 689
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 4 cut(s) 435, 549, 795, 855
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 111, 123, 597, 820
MboI GATC 4 cut(s) 109, 121, 595, 818
MboII GAAGA 6 cut(s) 380, 385, 431, 499, 963, 1004
MflI RGATCY 3 cut(s) 121, 595, 818
MhlI GDGCHC 3 cut(s) 697, 778, 880
MluCI AATT 4 cut(s) 327, 371, 531, 925
MlyI GAGTC 2 cut(s) 84, 596
MroI TCCGGA 1 cut(s) 84
MseI TTAA 2 cut(s) 324, 374
MslI CAYNNNNRTG 1 cut(s) 944
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 4 cut(s) 27, 85, 338, 689
MspR9I CCNGG 9 cut(s) 27, 339, 689, 690, 699, 771, 870, 936, 987
MvaI CCWGG 5 cut(s) 699, 771, 870, 936, 987
MwoI GCNNNNNNNGC 5 cut(s) 47, 248, 260, 269, 884
NciI CCSGG 4 cut(s) 27, 339, 689, 690
NdeI CATATG 1 cut(s) 523
NdeII GATC 4 cut(s) 109, 121, 595, 818
NlaIII CATG 3 cut(s) 136, 818, 1042
NlaIV GGNNCC 5 cut(s) 40, 273, 440, 546, 597
NmeAIII GCCGAG 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 349
NsbI TGCGCA 1 cut(s) 137
NspV TTCGAA 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 98
PceI AGGCCT 2 cut(s) 715, 859
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 105
PfeI GAWTC 1 cut(s) 811
PfoI TCCNGGA 1 cut(s) 985
PkrI GCNGC 7 cut(s) 32, 43, 180, 253, 514, 624, 679
PleI GAGTC 2 cut(s) 84, 596
PpsI GAGTC 2 cut(s) 84, 596
Psp124BI GAGCTC 1 cut(s) 880
Psp6I CCWGG 5 cut(s) 697, 769, 868, 934, 985
PspFI CCCAGC 1 cut(s) 285
PspGI CCWGG 5 cut(s) 697, 769, 868, 934, 985
PspN4I GGNNCC 5 cut(s) 40, 273, 440, 546, 597
PspPI GGNCC 4 cut(s) 39, 205, 686, 851
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 3 cut(s) 121, 595, 818
RsaI GTAC 2 cut(s) 427, 553
RsaNI GTAC 2 cut(s) 426, 552
RseI CAYNNNNRTG 1 cut(s) 944
SacI GAGCTC 1 cut(s) 880
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 324, 374
SatI GCNGC 7 cut(s) 31, 42, 179, 252, 513, 623, 678
Sau3AI GATC 4 cut(s) 109, 121, 595, 818
Sau96I GGNCC 4 cut(s) 39, 205, 686, 851
SchI GAGTC 2 cut(s) 84, 596
ScrFI CCNGG 9 cut(s) 27, 339, 689, 690, 699, 771, 870, 936, 987
SduI GDGCHC 3 cut(s) 697, 778, 880
SexAI ACCWGGT 1 cut(s) 769
SfcI CTRYAG 1 cut(s) 675
Sfr274I CTCGAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 98
SmaI CCCGGG 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 944
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 4 cut(s) 327, 371, 531, 925
SseBI AGGCCT 2 cut(s) 715, 859
SsiI CCGC 6 cut(s) 33, 42, 48, 70, 662, 806
SspMI CTAG 4 cut(s) 435, 549, 795, 855
SstI GAGCTC 1 cut(s) 880
StuI AGGCCT 2 cut(s) 715, 859
StyD4I CCNGG 9 cut(s) 25, 337, 687, 688, 697, 769, 868, 934, 985
StyI CCWWGG 4 cut(s) 145, 264, 434, 854
TaaI ACNGT 2 cut(s) 322, 443
TaqI TCGA 7 cut(s) 20, 66, 99, 108, 346, 363, 483
TasI AATT 4 cut(s) 327, 371, 531, 925
TatI WGTACW 2 cut(s) 425, 551
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 811
Tru1I TTAA 2 cut(s) 324, 374
Tru9I TTAA 2 cut(s) 324, 374
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 6 cut(s) 30, 178, 251, 512, 622, 677
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 121, 803
TspMI CCCGGG 1 cut(s) 688
VneI GTGCAC 1 cut(s) 774
XagI CCTNNNNNAGG 2 cut(s) 756, 975
XapI RAATTY 1 cut(s) 925
XhoI CTCGAG 1 cut(s) 98
XmaI CCCGGG 1 cut(s) 688
XmaJI CCTAGG 2 cut(s) 434, 854
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 4 cut(s) 435, 549, 795, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.