Rmu_sc0005903.1_g000001

splicing factor 3A subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005903.1
Physical Location & Seq
Forward (+)
1 .. 1147
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005903.1_g000001.1.cds

Sequence Viewer

Length: 993 bp
gaaggttttccccactgcaaagtcactaagccattgagtaaaacttggaccgagagtggggttcaaagcccggaggtggaggctccacctccgcccagaacgaagccatcgaccgccgcgagcgactccgacaacttgccctcgagaccattgatctcgccaaagatccatacttcatgcgcaatcacctcggaagctatgagtgatattcctgctcagccccagccccacaagcacaaagtctccgttcgcaaaacagtgaaaattggtaggccgggctatagagtaacaaagcagtttgatggagagacaaagcaaaggtctcttctcttccagattgagtattcggaaatagaagataatgcaaagccaaggcatcgttttatgtcatcttatgagcagagggtccaaccctatgagaaaagataccagtatcttctgtttgcagccgaaccatacgagataattgcttttaaggttcctagtacagagattgacaaatcgactccgaagttcttctcacactgggatccagactccaaaatgttcacgttgcagctatatttcaaagttaagccaccagagacgaacaaacctcaacctcccccaaatgtcattggcacaggtgctcctggagttccttcaaggcctctacccccaccaccccgaggtccacctcctcctcctccacaaggaatggagcctagtgcacctatgggaaaccctcctagagctccaccaactattcctggttccttactgccacctcctcctatggtaaatggtcctgggcctatgcctcctggtggggctccacctgccccaccttcacctcctgtcagcaataacacaatggtgaatttcactcctggtatccaggtgggtagaccaccgactatgccacctccaccacaaggtttccaaggacaacagatgcagggccagggtcttcgtcgtcctcctcctcctacacctcctagcatgggtcgttaa

Protein Analysis

330

Amino Acids

35.98

Weight (kDa)

9.76

Isoelectric Point (pI)

71.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 826
Acc16I TGCGCA 1 cut(s) 181
Acc36I ACCTGC 1 cut(s) 826
AccI GTMKAC 1 cut(s) 886
AccII CGCG 1 cut(s) 119
AciI CCGC 3 cut(s) 92, 114, 117
AclWI GGATC 3 cut(s) 160, 524, 537
AcsI RAATTY 1 cut(s) 859
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 7 cut(s) 57, 76, 668, 692, 806, 914, 983
AgsI TTSAA 3 cut(s) 65, 568, 645
AjnI CCWGG 7 cut(s) 631, 748, 787, 802, 868, 876, 942
AleI CACNNNNGTG 1 cut(s) 854
AluBI AGCT 3 cut(s) 197, 559, 734
AluI AGCT 3 cut(s) 197, 559, 734
Alw21I GWGCWC 3 cut(s) 631, 712, 736
Alw26I GTCTC 5 cut(s) 139, 247, 302, 327, 578
Alw44I GTGCAC 1 cut(s) 708
AlwI GGATC 3 cut(s) 160, 524, 537
Ama87I CYCGRG 2 cut(s) 142, 666
AoxI GGCC 4 cut(s) 272, 647, 791, 940
ApaLI GTGCAC 1 cut(s) 708
ApeKI GCWGC 2 cut(s) 446, 556
ApoI RAATTY 1 cut(s) 859
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 2 cut(s) 6, 515
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 6 cut(s) 48, 406, 671, 785, 791, 940
AsuC2I CCSGG 2 cut(s) 71, 276
AsuHPI GGTGA 3 cut(s) 178, 822, 868
AvaI CYCGRG 2 cut(s) 142, 666
AvaII GGWCC 4 cut(s) 48, 406, 671, 785
BaeGI GKGCMC 1 cut(s) 712
BamHI GGATCC 1 cut(s) 529
BanII GRGCYC 2 cut(s) 736, 814
BbsI GAAGAC 1 cut(s) 941
Bbv12I GWGCWC 3 cut(s) 631, 712, 736
BbvI GCAGC 2 cut(s) 458, 568
BccI CCATC 2 cut(s) 115, 296
BcgI CGANNNNNNTGC 4 cut(s) 171, 205, 449, 483
BciT130I CCWGG 7 cut(s) 633, 750, 789, 804, 870, 878, 944
BciVI GTATCC 1 cut(s) 884
BcnI CCSGG 2 cut(s) 71, 276
BcoDI GTCTC 5 cut(s) 139, 247, 302, 327, 578
BfaI CTAG 4 cut(s) 483, 705, 729, 978
BfmI CTRYAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 826
BfuI GTATCC 1 cut(s) 884
BisI GCNGC 3 cut(s) 117, 447, 557
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 3 cut(s) 118, 448, 558
Bme1390I CCNGG 9 cut(s) 71, 276, 633, 750, 789, 804, 870, 878, 944
Bme18I GGWCC 4 cut(s) 48, 406, 671, 785
BmeT110I CYCGRG 2 cut(s) 142, 666
BmgT120I GGNCC 6 cut(s) 48, 406, 671, 785, 791, 940
BmiI GGNNCC 7 cut(s) 84, 407, 480, 531, 702, 754, 813
BmrFI CCNGG 9 cut(s) 71, 276, 633, 750, 789, 804, 870, 878, 944
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 385, 924
BmuI ACTGGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 941
BpmI CTGGAG 1 cut(s) 654
Bpu1102I GCTNAGC 1 cut(s) 216
BpuMI CCSGG 2 cut(s) 71, 276
BsaI GGTCTC 2 cut(s) 139, 327
BsaJI CCNNGG 6 cut(s) 189, 371, 667, 788, 922, 943
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 613, 643
Bsc4I CCNNNNNNNGG 7 cut(s) 57, 76, 668, 692, 806, 914, 983
Bse1I ACTGG 2 cut(s) 430, 530
BseBI CCWGG 7 cut(s) 633, 750, 789, 804, 870, 878, 944
BseDI CCNNGG 6 cut(s) 189, 371, 667, 788, 922, 943
BseLI CCNNNNNNNGG 7 cut(s) 57, 76, 668, 692, 806, 914, 983
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 430, 530
BseRI GAGGAG 6 cut(s) 669, 672, 675, 759, 951, 954
BseSI GKGCMC 1 cut(s) 712
BseXI GCAGC 2 cut(s) 458, 568
BseYI CCCAGC 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 4 cut(s) 274, 649, 793, 942
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 3 cut(s) 631, 712, 736
BsiHKCI CYCGRG 2 cut(s) 142, 666
BsiSI CCGG 2 cut(s) 71, 275
BslI CCNNNNNNNGG 7 cut(s) 57, 76, 668, 692, 806, 914, 983
BsmAI GTCTC 5 cut(s) 139, 247, 302, 327, 578
BsmBI CGTCTC 1 cut(s) 578
BsnI GGCC 4 cut(s) 274, 649, 793, 942
Bso31I GGTCTC 2 cut(s) 139, 327
BsoBI CYCGRG 2 cut(s) 142, 666
Bsp1286I GDGCHC 4 cut(s) 631, 712, 736, 814
Bsp143I GATC 3 cut(s) 153, 165, 529
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 3 cut(s) 92, 114, 117
BspANI GGCC 4 cut(s) 274, 649, 793, 942
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 7 cut(s) 84, 407, 480, 531, 702, 754, 813
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 3 cut(s) 160, 524, 537
BspTNI GGTCTC 2 cut(s) 139, 327
BsrI ACTGG 2 cut(s) 430, 530
BssECI CCNNGG 6 cut(s) 189, 371, 667, 788, 922, 943
BssMI GATC 3 cut(s) 153, 165, 529
BssT1I CCWWGG 2 cut(s) 371, 922
Bst2UI CCWGG 7 cut(s) 633, 750, 789, 804, 870, 878, 944
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 330, 335
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 2 cut(s) 27, 216
BstENI CCTNNNNNAGG 1 cut(s) 690
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 3 cut(s) 156, 168, 532
BstMAI GTCTC 5 cut(s) 139, 247, 302, 327, 578
BstMBI GATC 3 cut(s) 153, 165, 529
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 2 cut(s) 232, 818
BstNI CCWGG 7 cut(s) 633, 750, 789, 804, 870, 878, 944
BstSCI CCNGG 9 cut(s) 69, 274, 631, 748, 787, 802, 868, 876, 942
BstSFI CTRYAG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 712
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 458, 568
BstV2I GAAGAC 1 cut(s) 941
BstX2I RGATCY 2 cut(s) 165, 529
BstYI RGATCY 2 cut(s) 165, 529
BsuI GTATCC 1 cut(s) 884
BsuRI GGCC 4 cut(s) 274, 649, 793, 942
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 3 cut(s) 13, 264, 523
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 6 cut(s) 48, 406, 671, 785, 791, 940
Csp6I GTAC 1 cut(s) 486
CviAII CATG 2 cut(s) 177, 982
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 2 cut(s) 27, 216
DpnI GATC 3 cut(s) 155, 167, 531
DpnII GATC 3 cut(s) 153, 165, 529
Eam1104I CTCTTC 2 cut(s) 330, 335
EarI CTCTTC 2 cut(s) 330, 335
EciI GGCGGA 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 734
Eco130I CCWWGG 2 cut(s) 371, 922
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 2 cut(s) 736, 814
Eco31I GGTCTC 2 cut(s) 139, 327
Eco47I GGWCC 4 cut(s) 48, 406, 671, 785
Eco53kI GAGCTC 1 cut(s) 734
Eco88I CYCGRG 2 cut(s) 142, 666
EcoICRI GAGCTC 1 cut(s) 734
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoRII CCWGG 7 cut(s) 631, 748, 787, 802, 868, 876, 942
EcoT14I CCWWGG 2 cut(s) 371, 922
EcoT38I GRGCYC 2 cut(s) 736, 814
ErhI CCWWGG 2 cut(s) 371, 922
Esp3I CGTCTC 1 cut(s) 578
FaeI CATG 2 cut(s) 180, 985
FatI CATG 2 cut(s) 176, 981
FblI GTMKAC 1 cut(s) 886
Fnu4HI GCNGC 3 cut(s) 117, 447, 557
FriOI GRGCYC 2 cut(s) 736, 814
Fsp4HI GCNGC 3 cut(s) 117, 447, 557
FspBI CTAG 4 cut(s) 483, 705, 729, 978
FspI TGCGCA 1 cut(s) 181
GlaI GCGC 1 cut(s) 181
GluI GCNGC 3 cut(s) 117, 447, 557
GsaI CCCAGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 4 cut(s) 274, 649, 793, 942
HapII CCGG 2 cut(s) 71, 275
HhaI GCGC 1 cut(s) 182
Hin1II CATG 2 cut(s) 180, 985
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 3 cut(s) 125, 505, 536
HpaII CCGG 2 cut(s) 71, 275
HphI GGTGA 3 cut(s) 178, 822, 868
Hpy166II GTNNAC 4 cut(s) 549, 674, 710, 887
Hpy188I TCNGA 4 cut(s) 130, 193, 349, 510
Hpy188III TCNNGA 3 cut(s) 144, 334, 533
Hpy8I GTNNAC 4 cut(s) 549, 674, 710, 887
Hpy99I CGWCG 1 cut(s) 957
HpyAV CCTTC 2 cut(s) 651, 837
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 6 cut(s) 18, 365, 446, 556, 710, 937
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 818
HpyF3I CTNAG 2 cut(s) 27, 216
HpySE526I ACGT 1 cut(s) 551
Hsp92II CATG 2 cut(s) 180, 985
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 3 cut(s) 153, 165, 529
LmnI GCTCC 5 cut(s) 88, 634, 700, 739, 817
Lsp1109I GCAGC 2 cut(s) 458, 568
LweI GCATC 2 cut(s) 385, 924
MaeI CTAG 4 cut(s) 483, 705, 729, 978
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 2 cut(s) 22, 286
MalI GATC 3 cut(s) 155, 167, 531
MboI GATC 3 cut(s) 153, 165, 529
MboII GAAGA 6 cut(s) 317, 322, 368, 428, 508, 941
MflI RGATCY 2 cut(s) 165, 529
MhlI GDGCHC 4 cut(s) 631, 712, 736, 814
MluCI AATT 3 cut(s) 264, 465, 859
MlyI GAGTC 3 cut(s) 119, 499, 530
MmeI TCCRAC 2 cut(s) 153, 433
MroXI GAANNNNTTC 2 cut(s) 6, 515
MseI TTAA 3 cut(s) 474, 573, 991
MslI CAYNNNNRTG 1 cut(s) 854
MspI CCGG 2 cut(s) 71, 275
MspR9I CCNGG 9 cut(s) 71, 276, 633, 750, 789, 804, 870, 878, 944
MvaI CCWGG 7 cut(s) 633, 750, 789, 804, 870, 878, 944
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 232, 818
NciI CCSGG 2 cut(s) 71, 276
NdeII GATC 3 cut(s) 153, 165, 529
NlaIII CATG 2 cut(s) 180, 985
NlaIV GGNNCC 7 cut(s) 84, 407, 480, 531, 702, 754, 813
NmuCI GTSAC 1 cut(s) 22
NsbI TGCGCA 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 854
PaeR7I CTCGAG 1 cut(s) 142
PaqCI CACCTGC 1 cut(s) 826
PceI AGGCCT 1 cut(s) 649
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 116
PdmI GAANNNNTTC 2 cut(s) 6, 515
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 3 cut(s) 118, 448, 558
PleI GAGTC 3 cut(s) 119, 499, 530
PpsI GAGTC 3 cut(s) 119, 499, 530
Psp124BI GAGCTC 1 cut(s) 736
Psp6I CCWGG 7 cut(s) 631, 748, 787, 802, 868, 876, 942
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 7 cut(s) 631, 748, 787, 802, 868, 876, 942
PspN4I GGNNCC 7 cut(s) 84, 407, 480, 531, 702, 754, 813
PspPI GGNCC 6 cut(s) 48, 406, 671, 785, 791, 940
PsuI RGATCY 2 cut(s) 165, 529
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 854
SacI GAGCTC 1 cut(s) 736
SaqAI TTAA 3 cut(s) 474, 573, 991
SatI GCNGC 3 cut(s) 117, 447, 557
Sau3AI GATC 3 cut(s) 153, 165, 529
Sau96I GGNCC 6 cut(s) 48, 406, 671, 785, 791, 940
SchI GAGTC 3 cut(s) 119, 499, 530
ScrFI CCNGG 9 cut(s) 71, 276, 633, 750, 789, 804, 870, 878, 944
SduI GDGCHC 4 cut(s) 631, 712, 736, 814
SfaNI GCATC 2 cut(s) 385, 924
SfcI CTRYAG 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 142
SinI GGWCC 4 cut(s) 48, 406, 671, 785
SlaI CTCGAG 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 3 cut(s) 264, 465, 859
SseBI AGGCCT 1 cut(s) 649
SsiI CCGC 3 cut(s) 92, 114, 117
SspMI CTAG 4 cut(s) 483, 705, 729, 978
SstI GAGCTC 1 cut(s) 736
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 9 cut(s) 69, 274, 631, 748, 787, 802, 868, 876, 942
StyI CCWWGG 2 cut(s) 371, 922
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 554
TaqI TCGA 3 cut(s) 110, 143, 503
TaqII GACCGA 1 cut(s) 65
TasI AATT 3 cut(s) 264, 465, 859
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 474, 573, 991
Tru9I TTAA 3 cut(s) 474, 573, 991
TscAI CASTG 3 cut(s) 20, 264, 530
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 2 cut(s) 446, 556
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 165
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 3 cut(s) 20, 264, 530
VneI GTGCAC 1 cut(s) 708
VpaK11BI GGWCC 4 cut(s) 48, 406, 671, 785
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 1 cut(s) 859
XhoI CTCGAG 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 886
XmnI GAANNNNTTC 2 cut(s) 6, 515
XspI CTAG 4 cut(s) 483, 705, 729, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.