Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Reverse (-)

62306441 .. 62319332

Gene Structure 12892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0508500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCCAGGCCTACATGAACTGAGTAGAAAGAAAGCAAGAGTTGGATGTACTTTCTTGGTGGAAATGGAGCAAATCCGATATCCTATTCTTTTTCATCTAGCTCGTGATGTGCTCACAATTCCCATTTCTACTGTTGCATCTGAATCGGCCTTTAGCATTGGCGGGAGAGTTTTAGATCAATACCGCAGCTCACTGTTGCCTGACACAGTTCAAGCTTTGCTTTGTACTCGAGATTGGATTTTTGGTAACAAAGAAAAAGAGCGTGCTGAATTGGAGGATCTTACTGAAGACGTATTTGATTTGACATTGCAAGATAGATCTGGAGAAGGAGATAGCCGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

114

Amino Acids

12.93

Weight (kDa)

4.99

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimer_Tnp_hAT	PF05699	24 - 80	4.7e-23	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	162, 184, 337
AclWI	GGATC	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	49, 226
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	3 cut(s)	101, 189, 215
AluI	AGCT	3 cut(s)	101, 189, 215
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	7, 147
ApeKI	GCWGC	1 cut(s)	186
AvaI	CYCGRG	1 cut(s)	228
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	198
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BciT130I	CCWGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	2 cut(s)	187, 337
BlsI	GCNGC	2 cut(s)	188, 338
Bme1390I	CCNGG	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	198
BshFI	GGCC	2 cut(s)	9, 149
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	228
BsnI	GGCC	2 cut(s)	9, 149
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	175, 277, 317
BspACI	CCGC	3 cut(s)	162, 184, 337
BspANI	GGCC	2 cut(s)	9, 149
BspCNI	CTCAG	1 cut(s)	12
BspPI	GGATC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	305
BssMI	GATC	3 cut(s)	175, 277, 317
BssSI	CACGAG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	133, 195, 208
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	178, 280, 320
BstMBI	GATC	3 cut(s)	175, 277, 317
BstNI	CCWGG	1 cut(s)	6
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	2 cut(s)	277, 317
BstYI	RGATCY	2 cut(s)	277, 317
BsuRI	GGCC	2 cut(s)	9, 149
BtsCI	GGATG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	48, 225
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	6 cut(s)	9, 101, 149, 189, 215, 336
CviKI_1	RGCY	6 cut(s)	9, 101, 149, 189, 215, 336
CviQI	GTAC	2 cut(s)	48, 225
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	177, 279, 319
DpnII	GATC	3 cut(s)	175, 277, 317
Eco147I	AGGCCT	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	80
FaeI	CATG	1 cut(s)	17
FaiI	YATR	1 cut(s)	15
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	1 cut(s)	13
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	2 cut(s)	187, 337
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	187, 337
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	2 cut(s)	187, 337
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	9, 149
Hin1II	CATG	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	77, 142
Hpy188III	TCNNGA	3 cut(s)	104, 230, 321
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	3 cut(s)	133, 195, 208
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	137, 310
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	175, 277, 317
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	3 cut(s)	18, 213, 306
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	3 cut(s)	177, 279, 319
MboI	GATC	3 cut(s)	175, 277, 317
MboII	GAAGA	1 cut(s)	299
MflI	RGATCY	2 cut(s)	277, 317
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	117, 269, 340
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	1 cut(s)	268
MseI	TTAA	1 cut(s)	343
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	175, 277, 317
NlaIII	CATG	1 cut(s)	17
PaeR7I	CTCGAG	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	188, 338
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	277, 317
RsaI	GTAC	2 cut(s)	49, 226
RsaNI	GTAC	2 cut(s)	48, 225
SaqAI	TTAA	1 cut(s)	343
SatI	GCNGC	2 cut(s)	187, 337
Sau3AI	GATC	3 cut(s)	175, 277, 317
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	4 cut(s)	103, 191, 217, 294
SfaNI	GCATC	1 cut(s)	146
Sfr274I	CTCGAG	1 cut(s)	228
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	117, 269, 340
SseBI	AGGCCT	1 cut(s)	9
SsiI	CCGC	3 cut(s)	162, 184, 337
SspMI	CTAG	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	3 cut(s)	133, 195, 208
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	229
TasI	AATT	3 cut(s)	117, 269, 340
TatI	WGTACW	2 cut(s)	47, 224
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	30, 83
TspRI	CASTG	1 cut(s)	198
XhoI	CTCGAG	1 cut(s)	228
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.