Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Reverse (-)

9911675 .. 9915064

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGACAGAGAATGGGGCTCAAAGCCCGGAAGCGGAGGAGCCGCCTCTGCACAGAACGAAGCCATCGACCGCCGCGAGCGTCTCCGGCGGCTCGCGCTCGAGACCATCGATCTCGCCAAAGATCCCTATTTCATGCGCAATCACCTCGGAAGCTATGAGTGTAAGCTTTGTTTGACGCTGCACAACAACGAGGGCAACTACTTGGCGCATACACAAGGCAAGCGCCATCAGACTAATTTGGCAAAACGAGCTGCTCGCGAGGCGAAGGACGCACCTGCGCAGCCCCAGCCGCACAAGCGCAAGATTGAATATCCTGAGATTGAAGATAATACAAAGCCAAGGCATCGTTTTATGTCATCTTATGAGCAGAGGGTTCAAACTGTCGACAAAAAGTACCAGTATCTTCTGTTTGCAGCCGAGCCTTATGAGATAGTTGCTTTCAAGGTTCCTAACATTGAGATCGACAAAACTGATAAGTTTTTCTCACATTGGGATCCAGACTCAAAAATGTTCACATTGCAGCTATATTTCAAAACTAAGCCACCAGAGGCGAACAAACCGCAACCTCCCCCTGCAGCTAATGGCCCAGGTGCACCCGGTGTTCCATCAAGGCCTTTGCCCCCACCACCCCAAGGTCCTCCTCTGCCACAAGGACTGCCTCCTGGTGCACCAATGGGAAATCCTCCTAGAGCTCCTTCGCCAGGTCCTGGATCTTTACTACCACCCCCTCCTATGGGAAATGGCCCTAGGCCTATGCCTCCTGGTGGCGCTCCGCCTGCCCCTCCTCCGCCTCCTGTTGGTAATACAATGGCGAATTTCACTCCTGGCTCTCAGATGGGAAGGCCTCCATCTATGCCACCTCCACAAGGCTTTCCGGGACAACAAATGCAGGGCCAGGGTCTTCGTCCACCCCCACCACCTCCTAATATGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

312

Amino Acids

33.95

Weight (kDa)

9.65

Isoelectric Point (pI)

67.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	52 - 76	1e-06	Zinc-finger of C2H2 type
SF3A2	PF16835	101 - 171	1.3e-26	Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	283
Acc16I	TGCGCA	2 cut(s)	137, 279
Acc36I	ACCTGC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	3 cut(s)	75, 95, 258
AciI	CCGC	9 cut(s)	33, 42, 70, 73, 88, 290, 560, 773, 788
AclWI	GGATC	4 cut(s)	116, 488, 501, 718
AcsI	RAATTY	1 cut(s)	814
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	395
AgsI	TTSAA	5 cut(s)	308, 323, 377, 442, 532
AjnI	CCWGG	7 cut(s)	586, 661, 700, 706, 760, 823, 894
AluBI	AGCT	6 cut(s)	153, 166, 251, 523, 578, 692
AluI	AGCT	6 cut(s)	153, 166, 251, 523, 578, 692
Alw21I	GWGCWC	3 cut(s)	595, 670, 694
Alw26I	GTCTC	2 cut(s)	86, 95
Alw44I	GTGCAC	2 cut(s)	591, 666
AlwI	GGATC	4 cut(s)	116, 488, 501, 718
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	6 cut(s)	583, 611, 742, 749, 842, 892
ApaLI	GTGCAC	2 cut(s)	591, 666
ApeKI	GCWGC	6 cut(s)	178, 251, 280, 413, 520, 575
ApoI	RAATTY	1 cut(s)	814
AspA2I	CCTAGG	1 cut(s)	746
AspLEI	GCGC	7 cut(s)	97, 138, 208, 225, 280, 300, 770
AspS9I	GGNCC	5 cut(s)	584, 635, 704, 743, 892
AsuC2I	CCSGG	3 cut(s)	27, 597, 876
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	635, 704
AvrII	CCTAGG	1 cut(s)	746
BaeGI	GKGCMC	2 cut(s)	595, 670
BamHI	GGATCC	1 cut(s)	493
BanII	GRGCYC	2 cut(s)	20, 694
BbsI	GAAGAC	1 cut(s)	893
Bbv12I	GWGCWC	3 cut(s)	595, 670, 694
BbvI	GCAGC	6 cut(s)	165, 238, 292, 425, 532, 587
BccI	CCATC	6 cut(s)	71, 113, 234, 613, 829, 856
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	7 cut(s)	588, 663, 702, 708, 762, 825, 896
BcnI	CCSGG	3 cut(s)	27, 597, 876
BcoDI	GTCTC	2 cut(s)	86, 95
BfaI	CTAG	2 cut(s)	687, 747
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	2 cut(s)	226, 771
BfuAI	ACCTGC	1 cut(s)	283
BlnI	CCTAGG	1 cut(s)	746
Bme18I	GGWCC	2 cut(s)	635, 704
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	5 cut(s)	584, 635, 704, 743, 892
BmiI	GGNNCC	3 cut(s)	40, 447, 495
BmsI	GCATC	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	893
BpuMI	CCSGG	3 cut(s)	27, 597, 876
Bsa29I	ATCGAT	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	6 cut(s)	145, 338, 586, 631, 746, 895
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	7 cut(s)	588, 663, 702, 708, 762, 825, 896
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	6 cut(s)	145, 338, 586, 631, 746, 895
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	2 cut(s)	306, 845
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	3 cut(s)	51, 630, 774
BseSI	GKGCMC	2 cut(s)	595, 670
BseXI	GCAGC	6 cut(s)	165, 238, 292, 425, 532, 587
BseYI	CCCAGC	1 cut(s)	285
BsgI	GTGCAG	2 cut(s)	33, 164
Bsh1236I	CGCG	3 cut(s)	75, 95, 258
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	6 cut(s)	585, 613, 744, 751, 844, 894
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	3 cut(s)	595, 670, 694
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	27, 85, 597, 875
BslFI	GGGAC	1 cut(s)	891
BsmAI	GTCTC	2 cut(s)	86, 95
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	891
BsnI	GGCC	6 cut(s)	585, 613, 744, 751, 844, 894
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	4 cut(s)	20, 595, 670, 694
Bsp143I	GATC	5 cut(s)	109, 121, 459, 493, 710
Bsp68I	TCGCGA	1 cut(s)	258
BspACI	CCGC	9 cut(s)	33, 42, 70, 73, 88, 290, 560, 773, 788
BspANI	GGCC	6 cut(s)	585, 613, 744, 751, 844, 894
BspCNI	CTCAG	2 cut(s)	307, 844
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	3 cut(s)	75, 95, 258
BspLI	GGNNCC	3 cut(s)	40, 447, 495
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	283
BspPI	GGATC	4 cut(s)	116, 488, 501, 718
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	6 cut(s)	145, 338, 586, 631, 746, 895
BssMI	GATC	5 cut(s)	109, 121, 459, 493, 710
BssT1I	CCWWGG	3 cut(s)	338, 631, 746
Bst2UI	CCWGG	7 cut(s)	588, 663, 702, 708, 762, 825, 896
Bst4CI	ACNGT	1 cut(s)	382
BstC8I	GCNNGC	5 cut(s)	77, 93, 221, 256, 777
BstDEI	CTNAG	3 cut(s)	315, 537, 831
BstENI	CCTNNNNNAGG	2 cut(s)	699, 864
BstFNI	CGCG	3 cut(s)	75, 95, 258
BstH2I	RGCGCY	2 cut(s)	226, 771
BstHHI	GCGC	7 cut(s)	97, 138, 208, 225, 280, 300, 770
BstKTI	GATC	5 cut(s)	112, 124, 462, 496, 713
BstMAI	GTCTC	2 cut(s)	86, 95
BstMBI	GATC	5 cut(s)	109, 121, 459, 493, 710
BstMCI	CGRYCG	1 cut(s)	70
BstNI	CCWGG	7 cut(s)	588, 663, 702, 708, 762, 825, 896
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	2 cut(s)	595, 670
BstUI	CGCG	3 cut(s)	75, 95, 258
BstV1I	GCAGC	6 cut(s)	165, 238, 292, 425, 532, 587
BstV2I	GAAGAC	1 cut(s)	893
BstX2I	RGATCY	3 cut(s)	121, 493, 710
BstYI	RGATCY	3 cut(s)	121, 493, 710
Bsu15I	ATCGAT	1 cut(s)	108
BsuRI	GGCC	6 cut(s)	585, 613, 744, 751, 844, 894
BsuTUI	ATCGAT	1 cut(s)	108
BtuMI	TCGCGA	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	5 cut(s)	77, 93, 221, 256, 777
CaiI	CAGNNNCTG	1 cut(s)	707
CfoI	GCGC	7 cut(s)	97, 138, 208, 225, 280, 300, 770
Cfr13I	GGNCC	5 cut(s)	584, 635, 704, 743, 892
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	3 cut(s)	68, 184, 278
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	133
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	315, 537, 831
DpnI	GATC	5 cut(s)	111, 123, 461, 495, 712
DpnII	GATC	5 cut(s)	109, 121, 459, 493, 710
DraIII	CACNNNGTG	1 cut(s)	599
EciI	GGCGGA	2 cut(s)	762, 777
Ecl136II	GAGCTC	1 cut(s)	692
Eco130I	CCWWGG	3 cut(s)	338, 631, 746
Eco147I	AGGCCT	3 cut(s)	613, 751, 844
Eco24I	GRGCYC	2 cut(s)	20, 694
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	635, 704
Eco53kI	GAGCTC	1 cut(s)	692
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	692
EcoNI	CCTNNNNNAGG	2 cut(s)	699, 864
EcoO109I	RGGNCCY	2 cut(s)	635, 704
EcoRII	CCWGG	7 cut(s)	586, 661, 700, 706, 760, 823, 894
EcoT14I	CCWWGG	3 cut(s)	338, 631, 746
EcoT38I	GRGCYC	2 cut(s)	20, 694
ErhI	CCWWGG	3 cut(s)	338, 631, 746
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	1 cut(s)	136
FaqI	GGGAC	1 cut(s)	891
FatI	CATG	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	384
FriOI	GRGCYC	2 cut(s)	20, 694
FspBI	CTAG	2 cut(s)	687, 747
FspI	TGCGCA	2 cut(s)	137, 279
GlaI	GCGC	7 cut(s)	96, 137, 207, 224, 279, 299, 769
GsaI	CCCAGC	1 cut(s)	289
HaeII	RGCGCY	2 cut(s)	226, 771
HaeIII	GGCC	6 cut(s)	585, 613, 744, 751, 844, 894
HapII	CCGG	4 cut(s)	27, 85, 597, 875
HgaI	GACGC	3 cut(s)	68, 184, 278
HhaI	GCGC	7 cut(s)	97, 138, 208, 225, 280, 300, 770
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	7 cut(s)	95, 136, 206, 223, 278, 298, 768
HinP1I	GCGC	7 cut(s)	95, 136, 206, 223, 278, 298, 768
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	500
HpaII	CCGG	4 cut(s)	27, 85, 597, 875
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	5 cut(s)	385, 513, 593, 668, 908
Hpy188I	TCNGA	3 cut(s)	149, 231, 834
Hpy188III	TCNNGA	4 cut(s)	100, 257, 314, 497
Hpy8I	GTNNAC	5 cut(s)	385, 513, 593, 668, 908
HpyAV	CCTTC	3 cut(s)	259, 705, 834
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	8 cut(s)	50, 181, 413, 520, 575, 593, 668, 889
HpyF3I	CTNAG	3 cut(s)	315, 537, 831
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	7 cut(s)	95, 136, 206, 223, 278, 298, 768
Kzo9I	GATC	5 cut(s)	109, 121, 459, 493, 710
LmnI	GCTCC	3 cut(s)	38, 697, 775
Lsp1109I	GCAGC	6 cut(s)	165, 238, 292, 425, 532, 587
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	687, 747
MalI	GATC	5 cut(s)	111, 123, 461, 495, 712
MboI	GATC	5 cut(s)	109, 121, 459, 493, 710
MboII	GAAGA	3 cut(s)	335, 395, 893
MflI	RGATCY	3 cut(s)	121, 493, 710
MhlI	GDGCHC	4 cut(s)	20, 595, 670, 694
MluCI	AATT	2 cut(s)	235, 814
MlyI	GAGTC	1 cut(s)	494
MspI	CCGG	4 cut(s)	27, 85, 597, 875
MvaI	CCWGG	7 cut(s)	588, 663, 702, 708, 762, 825, 896
MvnI	CGCG	3 cut(s)	75, 95, 258
NciI	CCSGG	3 cut(s)	27, 597, 876
NdeII	GATC	5 cut(s)	109, 121, 459, 493, 710
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	3 cut(s)	40, 447, 495
NmeAIII	GCCGAG	1 cut(s)	442
NruI	TCGCGA	1 cut(s)	258
NsbI	TGCGCA	2 cut(s)	137, 279
PaeR7I	CTCGAG	1 cut(s)	98
PaqCI	CACCTGC	1 cut(s)	283
PceI	AGGCCT	3 cut(s)	613, 751, 844
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 72, 105
PflMI	CCANNNNNTGG	1 cut(s)	707
PfoI	TCCNGGA	2 cut(s)	706, 874
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	2 cut(s)	635, 704
Psp124BI	GAGCTC	1 cut(s)	694
Psp5II	RGGWCCY	2 cut(s)	635, 704
Psp6I	CCWGG	7 cut(s)	586, 661, 700, 706, 760, 823, 894
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	7 cut(s)	586, 661, 700, 706, 760, 823, 894
PspN4I	GGNNCC	3 cut(s)	40, 447, 495
PspPI	GGNCC	5 cut(s)	584, 635, 704, 743, 892
PspPPI	RGGWCCY	2 cut(s)	635, 704
PstI	CTGCAG	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	3 cut(s)	121, 493, 710
RruI	TCGCGA	1 cut(s)	258
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SacI	GAGCTC	1 cut(s)	694
SalI	GTCGAC	1 cut(s)	383
Sau3AI	GATC	5 cut(s)	109, 121, 459, 493, 710
Sau96I	GGNCC	5 cut(s)	584, 635, 704, 743, 892
SchI	GAGTC	1 cut(s)	494
SduI	GDGCHC	4 cut(s)	20, 595, 670, 694
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	573
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	2 cut(s)	635, 704
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	235, 814
SseBI	AGGCCT	3 cut(s)	613, 751, 844
SsiI	CCGC	9 cut(s)	33, 42, 70, 73, 88, 290, 560, 773, 788
SspMI	CTAG	2 cut(s)	687, 747
SstI	GAGCTC	1 cut(s)	694
StuI	AGGCCT	3 cut(s)	613, 751, 844
StyI	CCWWGG	3 cut(s)	338, 631, 746
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	5 cut(s)	66, 99, 108, 384, 462
TasI	AATT	2 cut(s)	235, 814
TauI	GCSGC	4 cut(s)	44, 75, 91, 292
TseI	GCWGC	6 cut(s)	178, 251, 280, 413, 520, 575
TspDTI	ATGAA	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	707
VneI	GTGCAC	2 cut(s)	591, 666
VpaK11BI	GGWCC	2 cut(s)	635, 704
XagI	CCTNNNNNAGG	2 cut(s)	699, 864
XapI	RAATTY	1 cut(s)	814
XhoI	CTCGAG	1 cut(s)	98
XmaJI	CCTAGG	1 cut(s)	746
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	687, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.