Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Forward (+)

3518923 .. 3519693

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G071900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGACAGAGAATGGGGTTCAAAGCCGGGCAGCGGTGGCCCCGCCTCGGCCCAAAACGAAGCCATCGACCGCAAAGAGCGTCTCCGAAGACTCGCCCTCGAGACCGTCGACCTCGCCAAAGACCCCTACTTCATGCGCAACCACCTCGGAAGCTACGAGTGCAAGCTTTGCTTGACACTGCACAAGAACGAGGGCAATTACTTGGCCCACACGCAAGGAAAGAGCCATCAGACTAACTTGGCACGGCGAGCTGCTCGTGAAGCCAAAGAAGCTCCTCCTGCTCCTCAGCCCCTGCAGCCTCAAAAGCGCAAAGGGAACGTCCGAAAGTCTGTCAAAATTGGTAGGCCTGGTTACCGAATTGAATATCCTGAGATTGAATTTAATGCGAAGCCACGGCACCGTTTTATGTCATCTTATGAGCAGAGAGTTCAATCTGTGGACAAAAGATACCAGTATCTTCTCTTTGCAGCCGAACCCTACGACACAATTGCTTTTAGGGTTCCTAGCACAGAGATTGACAAAACCACTCCCAATAAGTTTTTCTCAAACTGGGATCCAGACTCTAACATGTTCACATTGCAGATATATTTCAAAACTAAGGCACCGGAGACGAACAAACCACAACCTCCTCCCCTGCAGCCAATCGTCCAGGAGTTTAATAGTTTAAATGATCTTGGACCGGTACACGTGCTCCCACGTCACACTCTAGCTGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

240

Amino Acids

27.54

Weight (kDa)

9.53

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	396, 601
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	3 cut(s)	33, 42, 70
AclWI	GGATC	2 cut(s)	548, 561
AcsI	RAATTY	1 cut(s)	377
AcvI	CACGTG	1 cut(s)	688
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	2 cut(s)	32, 46
AflIII	ACRYGT	2 cut(s)	567, 685
AgeI	ACCGGT	1 cut(s)	679
AgsI	TTSAA	5 cut(s)	21, 362, 377, 431, 592
AjiI	CACGTC	1 cut(s)	698
AjnI	CCWGG	2 cut(s)	346, 648
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	5 cut(s)	153, 166, 251, 272, 710
AluI	AGCT	5 cut(s)	153, 166, 251, 272, 710
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	3 cut(s)	86, 95, 602
AlwI	GGATC	2 cut(s)	548, 561
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	4 cut(s)	37, 48, 204, 344
ApeKI	GCWGC	5 cut(s)	30, 251, 295, 467, 637
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AsiGI	ACCGGT	1 cut(s)	679
AspLEI	GCGC	2 cut(s)	138, 309
AspS9I	GGNCC	4 cut(s)	38, 49, 205, 677
AsuC2I	CCSGG	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	677
BamHI	GGATCC	1 cut(s)	553
BanI	GGYRCC	2 cut(s)	396, 601
BauI	CACGAG	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	693
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	5 cut(s)	42, 238, 307, 479, 649
BccI	CCATC	2 cut(s)	71, 234
BceAI	ACGGC	2 cut(s)	260, 410
BcgI	CGANNNNNNTGC	4 cut(s)	127, 161, 470, 504
BciT130I	CCWGG	2 cut(s)	348, 650
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	3 cut(s)	86, 95, 602
BfaI	CTAG	2 cut(s)	504, 707
BfmI	CTRYAG	2 cut(s)	293, 635
BisI	GCNGC	5 cut(s)	31, 252, 296, 468, 638
BlsI	GCNGC	5 cut(s)	32, 253, 297, 469, 639
Bme1390I	CCNGG	3 cut(s)	27, 348, 650
Bme18I	GGWCC	1 cut(s)	677
BmeT110I	CYCGRG	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	698
BmgT120I	GGNCC	4 cut(s)	38, 49, 205, 677
BmiI	GGNNCC	5 cut(s)	40, 398, 501, 555, 603
BmrFI	CCNGG	3 cut(s)	27, 348, 650
BmrI	ACTGGG	1 cut(s)	559
BmuI	ACTGGG	1 cut(s)	559
BpiI	GAAGAC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	688
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	45, 145, 392
BsaWI	WCCGGW	2 cut(s)	604, 679
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 46
Bse118I	RCCGGY	1 cut(s)	679
Bse1I	ACTGG	2 cut(s)	451, 554
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	2 cut(s)	348, 650
BseDI	CCNNGG	3 cut(s)	45, 145, 392
BseLI	CCNNNNNNNGG	2 cut(s)	32, 46
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	299, 360
BseNI	ACTGG	2 cut(s)	451, 554
BseRI	GAGGAG	3 cut(s)	264, 273, 618
BseXI	GCAGC	5 cut(s)	42, 238, 307, 479, 649
BsgI	GTGCAG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	4 cut(s)	39, 50, 206, 346
BshNI	GGYRCC	2 cut(s)	396, 601
BshTI	ACCGGT	1 cut(s)	679
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	26, 605, 680
BslI	CCNNNNNNNGG	2 cut(s)	32, 46
BsmAI	GTCTC	3 cut(s)	86, 95, 602
BsmBI	CGTCTC	2 cut(s)	86, 602
BsnI	GGCC	4 cut(s)	39, 50, 206, 346
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	2 cut(s)	553, 670
BspACI	CCGC	3 cut(s)	33, 42, 70
BspANI	GGCC	4 cut(s)	39, 50, 206, 346
BspCNI	CTCAG	2 cut(s)	298, 361
BspLI	GGNNCC	5 cut(s)	40, 398, 501, 555, 603
BspMAI	CTGCAG	2 cut(s)	297, 639
BspPI	GGATC	2 cut(s)	548, 561
BspT107I	GGYRCC	2 cut(s)	396, 601
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	575
BsrFI	RCCGGY	1 cut(s)	679
BsrI	ACTGG	2 cut(s)	451, 554
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	3 cut(s)	45, 145, 392
BssMI	GATC	2 cut(s)	553, 670
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	348, 650
Bst4CI	ACNGT	2 cut(s)	106, 401
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	688
BstC8I	GCNNGC	2 cut(s)	164, 249
BstDEI	CTNAG	3 cut(s)	285, 369, 597
BstDSI	CCRYGG	1 cut(s)	392
BstEII	GGTNACC	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	138, 309
BstKTI	GATC	2 cut(s)	556, 673
BstMAI	GTCTC	3 cut(s)	86, 95, 602
BstMBI	GATC	2 cut(s)	553, 670
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	9 cut(s)	36, 159, 168, 248, 260, 269, 278, 295, 304
BstNI	CCWGG	2 cut(s)	348, 650
BstNSI	RCATGY	1 cut(s)	571
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	3 cut(s)	25, 346, 648
BstSFI	CTRYAG	2 cut(s)	293, 635
BstV1I	GCAGC	5 cut(s)	42, 238, 307, 479, 649
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	4 cut(s)	39, 50, 206, 346
BtgI	CCRYGG	1 cut(s)	392
BtrI	CACGTC	1 cut(s)	698
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	164, 249
CaiI	CAGNNNCTG	1 cut(s)	292
CfoI	GCGC	2 cut(s)	138, 309
Cfr10I	RCCGGY	1 cut(s)	679
Cfr13I	GGNCC	4 cut(s)	38, 49, 205, 677
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	683
CspAI	ACCGGT	1 cut(s)	679
CviAII	CATG	2 cut(s)	133, 568
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	3 cut(s)	285, 369, 597
DpnI	GATC	2 cut(s)	555, 672
DpnII	GATC	2 cut(s)	553, 670
DraI	TTTAAA	1 cut(s)	666
Eco147I	AGGCCT	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	677
Eco72I	CACGTG	1 cut(s)	688
Eco88I	CYCGRG	1 cut(s)	98
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	346, 648
Esp3I	CGTCTC	2 cut(s)	86, 602
FaeI	CATG	2 cut(s)	136, 571
FaiI	YATR	5 cut(s)	134, 407, 417, 569, 586
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	2 cut(s)	132, 567
FauI	CCCGC	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	5 cut(s)	31, 252, 296, 468, 638
Fsp4HI	GCNGC	5 cut(s)	31, 252, 296, 468, 638
FspBI	CTAG	2 cut(s)	504, 707
FspI	TGCGCA	1 cut(s)	137
GlaI	GCGC	2 cut(s)	137, 308
GluI	GCNGC	5 cut(s)	31, 252, 296, 468, 638
HaeIII	GGCC	4 cut(s)	39, 50, 206, 346
HapII	CCGG	3 cut(s)	26, 605, 680
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	138, 309
Hin1II	CATG	2 cut(s)	136, 571
Hin6I	GCGC	2 cut(s)	136, 307
HinP1I	GCGC	2 cut(s)	136, 307
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	90, 560
HpaII	CCGG	3 cut(s)	26, 605, 680
Hpy166II	GTNNAC	4 cut(s)	109, 439, 573, 685
Hpy188I	TCNGA	4 cut(s)	86, 149, 231, 323
Hpy188III	TCNNGA	4 cut(s)	100, 257, 368, 557
Hpy8I	GTNNAC	4 cut(s)	109, 439, 573, 685
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	106, 401
HpyCH4IV	ACGT	3 cut(s)	318, 687, 697
HpyCH4V	TGCA	6 cut(s)	162, 181, 295, 467, 580, 637
HpyF10VI	GCNNNNNNNGC	9 cut(s)	36, 159, 168, 248, 260, 269, 278, 295, 304
HpyF3I	CTNAG	3 cut(s)	285, 369, 597
HpySE526I	ACGT	3 cut(s)	318, 687, 697
Hsp92II	CATG	2 cut(s)	136, 571
HspAI	GCGC	2 cut(s)	136, 307
Kzo9I	GATC	2 cut(s)	553, 670
LmnI	GCTCC	3 cut(s)	277, 286, 696
Lsp1109I	GCAGC	5 cut(s)	42, 238, 307, 479, 649
MaeI	CTAG	2 cut(s)	504, 707
MaeII	ACGT	3 cut(s)	318, 687, 697
MaeIII	GTNAC	2 cut(s)	350, 698
MalI	GATC	2 cut(s)	555, 672
MboI	GATC	2 cut(s)	553, 670
MboII	GAAGA	2 cut(s)	99, 449
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	5 cut(s)	196, 336, 357, 377, 486
MlyI	GAGTC	2 cut(s)	84, 554
MseI	TTAA	3 cut(s)	381, 657, 665
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	3 cut(s)	26, 605, 680
MspR9I	CCNGG	3 cut(s)	27, 348, 650
MunI	CAATTG	1 cut(s)	486
MvaI	CCWGG	2 cut(s)	348, 650
MwoI	GCNNNNNNNGC	9 cut(s)	36, 159, 168, 248, 260, 269, 278, 295, 304
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	553, 670
NlaIII	CATG	2 cut(s)	136, 571
NlaIV	GGNNCC	5 cut(s)	40, 398, 501, 555, 603
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	698
NsbI	TGCGCA	1 cut(s)	137
NspI	RCATGY	1 cut(s)	571
PaeR7I	CTCGAG	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	346
PciI	ACATGT	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 105, 153
PfoI	TCCNGGA	1 cut(s)	648
PinAI	ACCGGT	1 cut(s)	679
PkrI	GCNGC	5 cut(s)	32, 253, 297, 469, 639
PleI	GAGTC	2 cut(s)	84, 554
PmaCI	CACGTG	1 cut(s)	688
PmlI	CACGTG	1 cut(s)	688
PpsI	GAGTC	2 cut(s)	84, 554
Ppu21I	YACGTR	1 cut(s)	688
PscI	ACATGT	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	346, 648
PspCI	CACGTG	1 cut(s)	688
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	346, 648
PspN4I	GGNNCC	5 cut(s)	40, 398, 501, 555, 603
PspPI	GGNCC	4 cut(s)	38, 49, 205, 677
PstI	CTGCAG	2 cut(s)	297, 639
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	381, 657, 665
SatI	GCNGC	5 cut(s)	31, 252, 296, 468, 638
Sau3AI	GATC	2 cut(s)	553, 670
Sau96I	GGNCC	4 cut(s)	38, 49, 205, 677
SchI	GAGTC	2 cut(s)	84, 554
ScrFI	CCNGG	3 cut(s)	27, 348, 650
SduI	GDGCHC	1 cut(s)	693
SfcI	CTRYAG	2 cut(s)	293, 635
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	677
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	5 cut(s)	196, 336, 357, 377, 486
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	3 cut(s)	33, 42, 70
SspMI	CTAG	2 cut(s)	504, 707
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	3 cut(s)	25, 346, 648
TaaI	ACNGT	2 cut(s)	106, 401
TaiI	ACGT	3 cut(s)	321, 690, 700
TaqI	TCGA	3 cut(s)	66, 99, 108
TasI	AATT	5 cut(s)	196, 336, 357, 377, 486
Tru1I	TTAA	3 cut(s)	381, 657, 665
Tru9I	TTAA	3 cut(s)	381, 657, 665
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	5 cut(s)	30, 251, 295, 467, 637
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	677
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	571
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	2 cut(s)	504, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.