Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030335.1

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 710

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030335.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

gaaggttttccccactgcaaagtcactaagccactgagtaaaacttgggaccgagagtggggttcaaagcccggaggtggaggctccacctccgcccagaacgaagccatcgaccgcctcgagcgactccgacaacttgccctcgagaccattgatctcgccaaagatccatacttcatgcgcaatcacctcggaagctatgagtgtaaactttgcttgaccttgcacaacaatgagggtaactacttggcccatacacagggaaagcgccaccagacctatctcgccaagcgggccgcgcgtgaggccaggatattcctgctcagccccagccccacaagcacaaagtctccgttcgcaaaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

9.55

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	182
AccII	CGCG	2 cut(s)	299, 301
AciI	CCGC	4 cut(s)	93, 115, 292, 297
AclWI	GGATC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	58, 77, 259
AgsI	TTSAA	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	1 cut(s)	198
AluI	AGCT	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	140, 354
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	2 cut(s)	119, 143
AoxI	GGCC	3 cut(s)	249, 294, 306
Asp700I	GAANNNNTTC	1 cut(s)	6
AspLEI	GCGC	3 cut(s)	183, 270, 301
AspS9I	GGNCC	3 cut(s)	49, 250, 294
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	179
AvaI	CYCGRG	2 cut(s)	119, 143
AvaII	GGWCC	1 cut(s)	49
BccI	CCATC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	140, 354
BfoI	RGCGCY	1 cut(s)	271
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	297
BlpI	GCTNAGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	2 cut(s)	72, 310
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	2 cut(s)	119, 143
BmgT120I	GGNCC	3 cut(s)	49, 250, 294
BmiI	GGNNCC	2 cut(s)	50, 85
BmrFI	CCNGG	2 cut(s)	72, 310
Bpu1102I	GCTNAGC	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 77, 259
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	3 cut(s)	58, 77, 259
BseMII	CTCAG	2 cut(s)	26, 337
BseYI	CCCAGC	1 cut(s)	329
Bsh1236I	CGCG	2 cut(s)	299, 301
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	251, 296, 308
BsiEI	CGRYCG	1 cut(s)	115
BsiHKCI	CYCGRG	2 cut(s)	119, 143
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	58, 77, 259
BsmAI	GTCTC	2 cut(s)	140, 354
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	251, 296, 308
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	2 cut(s)	119, 143
Bsp143I	GATC	2 cut(s)	154, 166
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	4 cut(s)	93, 115, 292, 297
BspANI	GGCC	3 cut(s)	251, 296, 308
BspCNI	CTCAG	2 cut(s)	27, 336
BspFNI	CGCG	2 cut(s)	299, 301
BspLI	GGNNCC	2 cut(s)	50, 85
BspPI	GGATC	1 cut(s)	161
BspTNI	GGTCTC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	154, 166
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	27, 35, 323
BstFNI	CGCG	2 cut(s)	299, 301
BstH2I	RGCGCY	1 cut(s)	271
BstHHI	GCGC	3 cut(s)	183, 270, 301
BstKTI	GATC	2 cut(s)	157, 169
BstMAI	GTCTC	2 cut(s)	140, 354
BstMBI	GATC	2 cut(s)	154, 166
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 298, 305, 339
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	70, 308
BstUI	CGCG	2 cut(s)	299, 301
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	251, 296, 308
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 32
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	3 cut(s)	183, 270, 301
Cfr13I	GGNCC	3 cut(s)	49, 250, 294
CviAII	CATG	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	27, 35, 323
DpnI	GATC	2 cut(s)	156, 168
DpnII	GATC	2 cut(s)	154, 166
EciI	GGCGGA	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	49
Eco88I	CYCGRG	2 cut(s)	119, 143
EcoRII	CCWGG	1 cut(s)	308
FaeI	CATG	1 cut(s)	181
FaiI	YATR	4 cut(s)	172, 179, 201, 255
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	177
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	297
FspI	TGCGCA	1 cut(s)	182
GlaI	GCGC	3 cut(s)	182, 269, 300
GluI	GCNGC	1 cut(s)	297
GsaI	CCCAGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	251, 296, 308
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	3 cut(s)	183, 270, 301
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	3 cut(s)	181, 268, 299
HinP1I	GCGC	3 cut(s)	181, 268, 299
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	131, 194
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4V	TGCA	2 cut(s)	18, 226
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 298, 305, 339
HpyF3I	CTNAG	3 cut(s)	27, 35, 323
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	3 cut(s)	181, 268, 299
Kzo9I	GATC	2 cut(s)	154, 166
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	8 cut(s)	85, 110, 245, 287, 295, 322, 332, 343
MaeIII	GTNAC	2 cut(s)	22, 239
MalI	GATC	2 cut(s)	156, 168
MboI	GATC	2 cut(s)	154, 166
MflI	RGATCY	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	8 cut(s)	68, 74, 100, 128, 152, 200, 229, 298
MroXI	GAANNNNTTC	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	72, 310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	2 cut(s)	299, 301
MwoI	GCNNNNNNNGC	4 cut(s)	293, 298, 305, 339
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	154, 166
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	50, 85
NmuCI	GTSAC	1 cut(s)	22
NsbI	TGCGCA	1 cut(s)	182
PaeR7I	CTCGAG	2 cut(s)	119, 143
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 117
PdmI	GAANNNNTTC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	298
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	50, 85
PspPI	GGNCC	3 cut(s)	49, 250, 294
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	231
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	2 cut(s)	154, 166
Sau96I	GGNCC	3 cut(s)	49, 250, 294
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	72, 310
SetI	ASST	7 cut(s)	7, 79, 92, 192, 200, 224, 281
Sfr274I	CTCGAG	2 cut(s)	119, 143
SinI	GGWCC	1 cut(s)	49
SlaI	CTCGAG	2 cut(s)	119, 143
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	119, 143
SmoI	CTYRAG	2 cut(s)	119, 143
SsiI	CCGC	4 cut(s)	93, 115, 292, 297
StyD4I	CCNGG	2 cut(s)	70, 308
TaaI	ACNGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	111, 120, 144
TaqII	GACCGA	1 cut(s)	66
TauI	GCSGC	1 cut(s)	299
TscAI	CASTG	2 cut(s)	20, 39
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	166
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	2 cut(s)	20, 39
VpaK11BI	GGWCC	1 cut(s)	49
XhoI	CTCGAG	2 cut(s)	119, 143
XmnI	GAANNNNTTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.