Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003932

Physical Location & Seq

Genomic Coordinates Forward (+)

9168738 .. 9169131

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCATCGGAACAAGAGAGAAGGGATCCCCAGAAAAGGGCTGAACTGGAAGAAAGAGCAAAGCGGGGAGAGACTGTAGTTCCTGGTGGAACTGGTGGTTTTAGCGTCGAAGCTCAGGAGCATCTTGCTGAAGCTAACGTGTTTGTGTGCTTGCATGGAAATGAAGGACGACACAAGGGAGGGGAGAAGGGAGGGCGGACTAGGAAGGAGGCTGATGTGATAGGCATAGGCCCAAGAGACGAGTCCGGAGAAGAGCGTGCCAATGAGGAAGGCATTACAATAGACGTGCACAAAACAAATAGTCGCACGCCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010720 GO:0010975 GO:0010976 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022008 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030532 GO:0031344 GO:0031346 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046483 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065003 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0120035 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

SF3A2 zf-met

Protein Analysis

105

Amino Acids

11.46

Weight (kDa)

5.84

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_5	PF00477	10 - 98	1.1e-15	Small hydrophilic plant seed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32600
fragaria_vesca	FvH4_6g16880 FvH4_6g16880 FvH4_6g16880 FvH4_6g16880
malus_domestica	MD04G1088800.v1.1 MD12G1106500.v1.1
prunus_persica	Prupe.4G071900_v2.0.a1 Prupe.7G125300_v2.0.a1 Prupe.7G125300_v2.0.a1
pyrus_communis	pycom04g08310 pycom12g10700
rosa_chinensis	RchiOBHm_Chr3g0470901 RchiOBHm_Chr7g0191101
rosa_laevigata	RLG00000024235 RLG00000025908
rosa_multiflora	Rmu_co8030388.1_g000001 Rmu_sc0005903.1_g000001 Rmu_sc0010267.1_g000002 Rmu_sc0030335.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264030 Rroxscaffold_6G00410430 Rroxscaffold_6G00426670
rosa_rugosa	Rorug03G0113500 Rorug06G0508500
rosa_samantha	Rh1AG146000 Rh1DG152700 Rh3AG163300 Rh3BG188700 Rh3CG178700 Rh3DG187400 Rh7BG118500 Rh7CG121000
rosa_wichuraiana	Rw3G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	245
AciI	CCGC	2 cut(s)	64, 196
AclWI	GGATC	2 cut(s)	20, 33
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	36, 37
AflIII	ACRYGT	1 cut(s)	138
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	113, 134
AluI	AGCT	2 cut(s)	113, 134
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	2 cut(s)	65, 231
Alw44I	GTGCAC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	20, 33
Aor13HI	TCCGGA	1 cut(s)	245
AoxI	GGCC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	230
BaeGI	GKGCMC	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	291
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	65, 231
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	84
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	14, 130
Bpu10I	CCTNAGC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 37
Bse1I	ACTGG	2 cut(s)	51, 97
BseAI	TCCGGA	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	36, 37
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	51, 97
BseSI	GKGCMC	1 cut(s)	291
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	36, 37
BsmAI	GTCTC	2 cut(s)	65, 231
BsmBI	CGTCTC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp13I	TCCGGA	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	2 cut(s)	64, 196
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	127
BspEI	TCCGGA	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	20, 33
BspQI	GCTCTTC	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	51, 97
BssMI	GATC	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	152, 258, 308
BstDEI	CTNAG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	65, 231
BstMBI	GATC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	286
Cac8I	GCNNGC	3 cut(s)	152, 258, 308
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	94
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	5 cut(s)	41, 113, 134, 212, 231
CviKI_1	RGCY	5 cut(s)	41, 113, 134, 212, 231
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	1 cut(s)	158
FaiI	YATR	2 cut(s)	156, 227
FatI	CATG	1 cut(s)	154
FauI	CCCGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	116, 246
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	5 cut(s)	15, 158, 181, 199, 263
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	2 cut(s)	138, 285
HpyCH4V	TGCA	2 cut(s)	154, 289
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	2 cut(s)	138, 285
Hsp92II	CATG	1 cut(s)	158
Kpn2I	TCCGGA	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	32, 44, 69, 78, 96, 101, 259
LweI	GCATC	2 cut(s)	14, 130
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	138, 285
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	2 cut(s)	62, 263
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	173, 185, 202, 259
MroI	TCCGGA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	115, 136, 141, 288
SfaNI	GCATC	2 cut(s)	14, 130
SfcI	CTRYAG	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	159
SsiI	CCGC	2 cut(s)	64, 196
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	2 cut(s)	141, 288
TaqI	TCGA	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	177
VneI	GTGCAC	1 cut(s)	287
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.