Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

15485619 .. 15487451

Gene Structure 1833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGTAGGGCTCCATGTTGTGACAAGGCAAATGTGAAGAGAGGTCCATGGTCTCCTGAAGAAGACGCAAAGCTTAAAGATTACATCGAGAAACAAGGAACTGGTGGCAATTGGATTGCTCTCCCTCACAAAGCTGGTTTAAGGAGATGTGGGAAGAGTTGCAGACTGAGATGGTTAAATTATTTGAGACCAAACATAAGACATGGAGATTTCACTGAAGAAGAAGACAATATTATCTACAGCCTCTTTGCCTCCATTGGAAGCAGGTGGTCAGTAATAGCAGCTCACTTGCAAGGTAGAACTGATAATGACATCAAGAACTATTGGAACACTAAGCTCAAGAAGAAGCTCATAGCCACCATGGCTCCTCCTCCACATCACCACTTAGCCATTGCTACATCATCATCATCAGCATCCCCATCATCATCATCACATTACAACATGATCAATAGTCTTCTTCCGTATAACCCATCAACAAACCAACTTCTCACACCTCATCAGGGTATCATGATGACAATGATGGGCCAACAACAACAACTATTTTATCAAGAAGACATGGGCAATTTGGTAAATTCTCCAAACAGAAACAATCTCATAATGAGCCATCAAGAAGACAACCAAGAGCAAAGTACAAACAAGGGAATAATGTTGTTGAGTGATGTAAGAAGTGGGTCGAGTACAACAAGTACAGTAACAAGAGTGAAGATGGAACATCGTGATCATGATGATCATCATCATCATCATGAAGAAGATGAGAGATCAATGACCTCGGTAGTGATGGAAGATTATGGAATGGAGGAGATCAAGCAATTAATAAGTAGTAGTTGTACGAGTAGTAACAATAGCTTGTGGTTTGACGAAAACAAGACGGAGGATAAGTTCATGTTGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

298

Amino Acids

34.06

Weight (kDa)

6.59

Isoelectric Point (pI)

70.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	55 - 103	5.4e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	58 - 117	4.8e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	110 - 152	7.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	112 - 157	2.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	2 cut(s)	78, 237
AfaI	GTAC	5 cut(s)	631, 679, 688, 829, 890
AfiI	CCNNNNNNNGG	1 cut(s)	500
AloI	GAACNNNNNNTCC	2 cut(s)	863, 895
AluBI	AGCT	6 cut(s)	73, 134, 284, 337, 349, 846
AluI	AGCT	6 cut(s)	73, 134, 284, 337, 349, 846
Alw26I	GTCTC	2 cut(s)	57, 181
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	571
AseI	ATTAAT	1 cut(s)	812
AspS9I	GGNCC	2 cut(s)	44, 523
AsuHPI	GGTGA	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	5 cut(s)	69, 231, 446, 558, 618
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	7 cut(s)	165, 427, 478, 514, 612, 700, 772
BclI	TGATCA	3 cut(s)	444, 718, 727
BcoDI	GTCTC	2 cut(s)	57, 181
BfmI	CTRYAG	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 523
BmiI	GGNNCC	2 cut(s)	12, 366
BmsI	GCATC	1 cut(s)	422
BpiI	GAAGAC	5 cut(s)	69, 231, 446, 558, 618
BpuEI	CTTGAG	1 cut(s)	323
BsaBI	GATNNNNATC	2 cut(s)	729, 732
BsaI	GGTCTC	2 cut(s)	57, 181
BsaJI	CCNNGG	3 cut(s)	47, 360, 768
BsaXI	ACNNNNNCTCC	4 cut(s)	349, 379, 863, 893
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	2 cut(s)	729, 732
BseDI	CCNNGG	3 cut(s)	47, 360, 768
BseGI	GGATG	1 cut(s)	413
BseJI	GATNNNNATC	2 cut(s)	729, 732
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	357, 360, 812
BseXI	GCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	57, 181
BsnI	GGCC	1 cut(s)	525
Bso31I	GGTCTC	2 cut(s)	57, 181
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	5 cut(s)	444, 718, 727, 758, 801
Bsp19I	CCATGG	2 cut(s)	47, 360
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	1 cut(s)	159
BspHI	TCATGA	3 cut(s)	507, 721, 742
BspLI	GGNNCC	2 cut(s)	12, 366
BspMI	ACCTGC	1 cut(s)	255
BspTNI	GGTCTC	2 cut(s)	57, 181
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	47, 360, 768
BssMI	GATC	5 cut(s)	444, 718, 727, 758, 801
BssT1I	CCWWGG	2 cut(s)	47, 360
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	2 cut(s)	32, 149
BstDEI	CTNAG	3 cut(s)	167, 333, 385
BstDSI	CCRYGG	2 cut(s)	47, 360
BstF5I	GGATG	1 cut(s)	413
BstKTI	GATC	5 cut(s)	447, 721, 730, 761, 804
BstMAI	GTCTC	2 cut(s)	57, 181
BstMBI	GATC	5 cut(s)	444, 718, 727, 758, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	293
BstV2I	GAAGAC	5 cut(s)	69, 231, 446, 558, 618
BsuRI	GGCC	1 cut(s)	525
BtgI	CCRYGG	2 cut(s)	47, 360
BtsCI	GGATG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	255
CciI	TCATGA	3 cut(s)	507, 721, 742
Cfr13I	GGNCC	2 cut(s)	44, 523
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	5 cut(s)	630, 678, 687, 828, 889
CviQI	GTAC	5 cut(s)	630, 678, 687, 828, 889
DdeI	CTNAG	3 cut(s)	167, 333, 385
DpnI	GATC	5 cut(s)	446, 720, 729, 760, 803
DpnII	GATC	5 cut(s)	444, 718, 727, 758, 801
Eam1104I	CTCTTC	2 cut(s)	32, 149
EarI	CTCTTC	2 cut(s)	32, 149
Eco130I	CCWWGG	2 cut(s)	47, 360
Eco24I	GRGCYC	1 cut(s)	13
Eco31I	GGTCTC	2 cut(s)	57, 181
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	78, 237
EcoT14I	CCWWGG	2 cut(s)	47, 360
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 360
FbaI	TGATCA	3 cut(s)	444, 718, 727
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	525
HgaI	GACGC	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	71
HphI	GGTGA	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4V	TGCA	2 cut(s)	162, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	167, 333, 385
Ksp22I	TGATCA	3 cut(s)	444, 718, 727
Kzo9I	GATC	5 cut(s)	444, 718, 727, 758, 801
LmnI	GCTCC	2 cut(s)	16, 370
LpnPI	CCDG	5 cut(s)	69, 87, 120, 250, 485
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	20, 691, 836
MalI	GATC	5 cut(s)	446, 720, 729, 760, 803
MboI	GATC	5 cut(s)	444, 718, 727, 758, 801
MfeI	CAATTG	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	5 cut(s)	109, 178, 562, 571, 809
MseI	TTAA	4 cut(s)	75, 140, 176, 812
MslI	CAYNNNNRTG	1 cut(s)	741
MunI	CAATTG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	362
NcoI	CCATGG	2 cut(s)	47, 360
NdeII	GATC	5 cut(s)	444, 718, 727, 758, 801
NlaIV	GGNNCC	2 cut(s)	12, 366
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	3 cut(s)	507, 721, 742
PaqCI	CACCTGC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	812
PspN4I	GGNNCC	2 cut(s)	12, 366
PspPI	GGNCC	2 cut(s)	44, 523
RsaI	GTAC	5 cut(s)	631, 679, 688, 829, 890
RsaNI	GTAC	5 cut(s)	630, 678, 687, 828, 889
RseI	CAYNNNNRTG	1 cut(s)	741
SaqAI	TTAA	4 cut(s)	75, 140, 176, 812
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	5 cut(s)	444, 718, 727, 758, 801
Sau96I	GGNCC	2 cut(s)	44, 523
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	422
SfcI	CTRYAG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	109, 178, 562, 571, 809
SspI	AATATT	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	47, 360
TaaI	ACNGT	1 cut(s)	691
TaqI	TCGA	2 cut(s)	87, 674
TasI	AATT	5 cut(s)	109, 178, 562, 571, 809
TatI	WGTACW	4 cut(s)	629, 677, 686, 888
Tru1I	TTAA	4 cut(s)	75, 140, 176, 812
Tru9I	TTAA	4 cut(s)	75, 140, 176, 812
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	759, 871
TspGWI	ACGGA	2 cut(s)	450, 884
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	812
XapI	RAATTY	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.