MD00G1032600.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0003513
Physical Location & Seq
Forward (+)
5708791 .. 5710879
2089 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1032600.v1.1.491

Sequence Viewer

Length: 1047 bp
ATGGGGAGGGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAGGGACCATGGTCACCAGAAGAAGATTCAAAGCTAAAAGAGTACATAGAGAAGTATGGGACTGGTGGGAATTGGATTGCTCTCCCACAGAAAGCTGGTCTGAAGAGATGTGGGAAAAGCTGCAGATTGAGATGGCTTAACTATCTGAGGCCAAACATCAAACATGGAGAATTCTCTGATGAGGAAGACAGGATAATATGCAGCCTCTTTGCTAGTATTGGAAGCAGGTGGTCAGTTATAGCTGCTCAGCTGCCAGGCAGGACTGACAACGATATCAAGAACTACTGGAACACCAAGCTCAAGAAGAAGCTCATGGGGATGCATATGGGTCCTCCTCGACCTCACAACCACCATAAAAATTTACTAAAGCCTCCCCCATTTCCTTCTTCCTCTCATCACAATTACCAAAACCAACCATTAATTCCATCTGAACCTCTATCGTCGCTGTACAAAGACCTAAGCAATTACAACAGATCTTTCTTAGGGTTTGAAGCGCCAGTGCCATTGCCACCACAAGTTTCGCTGACGTCCAATAATTTCTCAAACATTTCCACCAACTCTTCTATTTTTCAAACCCTAAATTACCCAGCTGGAGTGAAGGAAAATAACAATAATAATAACCTCCTCGTGTTTGGAAGTGAAGGGAGTTGCAGTACTTCGTCTGATGGAAGCTGTAATAATCAGATCAGCTATGACTACTGCAGCAGATCAGAGATTAATAACATCAAACAAGAAGAAATGGGTTTTGATCATCAGGGCTTCATGATGCTTAACTATGGCAACCAATGGACCGAAAGGCCAAATGGGTTTTATTTTGGATCAGAAAACAACACATTAGAATTTACTGATCTGGACGAAGATGTTAAGCAGCAGCTGATTAGTACTAGAAGTAAAAATAATTATAATAATAATACTATTATAAATGAGTCCTCTAAGTCTAACAGCTTTTTATTCAATGTTAATGAAAGCAAGACAGAAGATGATGAGAAGGTCATGTATTTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

349

Amino Acids

39.65

Weight (kDa)

7.57

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 2.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 4.8e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 111 1.2e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 2.4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 942, 959
AarI CACCTGC 1 cut(s) 255
AatII GACGTC 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 865
AcsI RAATTY 3 cut(s) 209, 397, 878
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 566
AfaI GTAC 4 cut(s) 83, 488, 694, 922
AgsI TTSAA 4 cut(s) 69, 530, 611, 994
AjnI CCWGG 1 cut(s) 292
AjuI GAANNNNNNNTTGG 2 cut(s) 444, 476
AlwI GGATC 1 cut(s) 865
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 2 cut(s) 188, 836
ApeKI GCWGC 7 cut(s) 159, 240, 281, 289, 741, 907, 910
ApoI RAATTY 3 cut(s) 209, 397, 878
AseI ATTAAT 2 cut(s) 458, 756
AspLEI GCGC 1 cut(s) 535
AspS9I GGNCC 3 cut(s) 44, 368, 828
AsuHPI GGTGA 1 cut(s) 45
AvaII GGWCC 3 cut(s) 44, 368, 828
BanII GRGCYC 1 cut(s) 13
BauI CACGAG 1 cut(s) 665
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 7 cut(s) 146, 252, 268, 276, 753, 919, 922
BccI CCATC 3 cut(s) 165, 472, 698
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 787
BfaI CTAG 2 cut(s) 252, 924
BfmI CTRYAG 2 cut(s) 160, 739
BfoI RGCGCY 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 255
BglII AGATCT 1 cut(s) 512
BisI GCNGC 7 cut(s) 160, 241, 282, 290, 742, 908, 911
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 7 cut(s) 161, 242, 283, 291, 743, 909, 912
BmcAI AGTACT 2 cut(s) 694, 922
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 3 cut(s) 44, 368, 828
BmgT120I GGNCC 3 cut(s) 44, 368, 828
BmiI GGNNCC 3 cut(s) 12, 45, 369
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 2 cut(s) 348, 795
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 497
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 676, 706
Bse1I ACTGG 3 cut(s) 106, 329, 536
Bse3DI GCAATG 1 cut(s) 542
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 363
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 2 cut(s) 176, 299
BseNI ACTGG 3 cut(s) 106, 329, 536
BseRI GAGGAG 2 cut(s) 363, 653
BseXI GCAGC 7 cut(s) 146, 252, 268, 276, 753, 919, 922
BseYI CCCAGC 1 cut(s) 625
BshFI GGCC 2 cut(s) 190, 838
BslFI GGGAC 2 cut(s) 57, 112
BsmFI GGGAC 2 cut(s) 57, 112
BsnI GGCC 2 cut(s) 190, 838
Bsp1286I GDGCHC 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 486
Bsp143I GATC 6 cut(s) 512, 723, 746, 787, 857, 886
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 2 cut(s) 190, 838
BspCNI CTCAG 2 cut(s) 177, 298
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 3 cut(s) 12, 45, 369
BspMAI CTGCAG 2 cut(s) 164, 743
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 865
BsrDI GCAATG 1 cut(s) 542
BsrGI TGTACA 1 cut(s) 486
BsrI ACTGG 3 cut(s) 106, 329, 536
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 6 cut(s) 512, 723, 746, 787, 857, 886
BssNI GRCGYC 1 cut(s) 566
BssSI CACGAG 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 665
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 2 cut(s) 137, 604
BstACI GRCGYC 1 cut(s) 566
BstAUI TGTACA 1 cut(s) 486
BstDEI CTNAG 5 cut(s) 185, 285, 497, 520, 972
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 1 cut(s) 363
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 6 cut(s) 515, 726, 749, 790, 860, 889
BstMBI GATC 6 cut(s) 512, 723, 746, 787, 857, 886
BstNI CCWGG 1 cut(s) 294
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 2 cut(s) 160, 739
BstV1I GCAGC 7 cut(s) 146, 252, 268, 276, 753, 919, 922
BstV2I GAAGAC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuRI GGCC 2 cut(s) 190, 838
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 543
BveI ACCTGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 913
CciI TCATGA 1 cut(s) 801
CfoI GCGC 1 cut(s) 535
Cfr13I GGNCC 3 cut(s) 44, 368, 828
Csp6I GTAC 4 cut(s) 82, 487, 693, 921
CviAII CATG 5 cut(s) 48, 203, 352, 802, 1033
CviQI GTAC 4 cut(s) 82, 487, 693, 921
DdeI CTNAG 5 cut(s) 185, 285, 497, 520, 972
DpnI GATC 6 cut(s) 514, 725, 748, 789, 859, 888
DpnII GATC 6 cut(s) 512, 723, 746, 787, 857, 886
Eam1104I CTCTTC 2 cut(s) 137, 604
EarI CTCTTC 2 cut(s) 137, 604
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 313
Eco47I GGWCC 3 cut(s) 44, 368, 828
Eco57I CTGAAG 1 cut(s) 161
Eco91I GGTNACC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 5 cut(s) 51, 206, 355, 805, 1036
FaqI GGGAC 2 cut(s) 57, 112
FatI CATG 5 cut(s) 47, 202, 351, 801, 1032
FauNDI CATATG 1 cut(s) 363
FbaI TGATCA 1 cut(s) 787
Fnu4HI GCNGC 7 cut(s) 160, 241, 282, 290, 742, 908, 911
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 7 cut(s) 160, 241, 282, 290, 742, 908, 911
FspBI CTAG 2 cut(s) 252, 924
GlaI GCGC 1 cut(s) 534
GluI GCNGC 7 cut(s) 160, 241, 282, 290, 742, 908, 911
GsaI CCCAGC 1 cut(s) 629
GsuI CTGGAG 1 cut(s) 651
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 2 cut(s) 190, 838
HhaI GCGC 1 cut(s) 535
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 5 cut(s) 51, 206, 355, 805, 1036
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HinfI GANTC 2 cut(s) 65, 965
HphI GGTGA 1 cut(s) 45
Hpy188I TCNGA 8 cut(s) 141, 186, 217, 469, 703, 723, 751, 862
Hpy188III TCNNGA 4 cut(s) 316, 340, 802, 890
Hpy99I CGWCG 1 cut(s) 484
HpyAV CCTTC 5 cut(s) 34, 432, 631, 674, 1021
HpyCH4IV ACGT 2 cut(s) 33, 566
HpyCH4V TGCA 5 cut(s) 162, 240, 361, 690, 741
HpyF3I CTNAG 5 cut(s) 185, 285, 497, 520, 972
HpySE526I ACGT 2 cut(s) 33, 566
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 5 cut(s) 51, 206, 355, 805, 1036
HspAI GCGC 1 cut(s) 533
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 6 cut(s) 512, 723, 746, 787, 857, 886
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 7 cut(s) 146, 252, 268, 276, 753, 919, 922
LweI GCATC 2 cut(s) 348, 795
MaeI CTAG 2 cut(s) 252, 924
MaeII ACGT 2 cut(s) 33, 566
MaeIII GTNAC 2 cut(s) 20, 51
MalI GATC 6 cut(s) 514, 725, 748, 789, 859, 888
MboI GATC 6 cut(s) 512, 723, 746, 787, 857, 886
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 13
MlyI GAGTC 1 cut(s) 974
Mph1103I ATGCAT 1 cut(s) 363
MseI TTAA 6 cut(s) 177, 458, 756, 810, 903, 999
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 3 cut(s) 289, 629, 913
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 363
NdeII GATC 6 cut(s) 512, 723, 746, 787, 857, 886
NlaIII CATG 5 cut(s) 51, 206, 355, 805, 1036
NlaIV GGNNCC 3 cut(s) 12, 45, 369
NmuCI GTSAC 2 cut(s) 20, 51
NsiI ATGCAT 1 cut(s) 363
PagI TCATGA 1 cut(s) 801
PaqCI CACCTGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 7 cut(s) 161, 242, 283, 291, 743, 909, 912
PleI GAGTC 1 cut(s) 973
PpsI GAGTC 1 cut(s) 973
PpuMI RGGWCCY 1 cut(s) 368
PshAI GACNNNNGTC 1 cut(s) 49
PshBI ATTAAT 2 cut(s) 458, 756
PsiI TTATAA 2 cut(s) 942, 959
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 292
PspEI GGTNACC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 625
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 3 cut(s) 12, 45, 369
PspPI GGNCC 3 cut(s) 44, 368, 828
PspPPI RGGWCCY 1 cut(s) 368
PstI CTGCAG 2 cut(s) 164, 743
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 512
PvuII CAGCTG 3 cut(s) 289, 629, 913
RsaI GTAC 4 cut(s) 83, 488, 694, 922
RsaNI GTAC 4 cut(s) 82, 487, 693, 921
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 6 cut(s) 177, 458, 756, 810, 903, 999
SatI GCNGC 7 cut(s) 160, 241, 282, 290, 742, 908, 911
Sau3AI GATC 6 cut(s) 512, 723, 746, 787, 857, 886
Sau96I GGNCC 3 cut(s) 44, 368, 828
ScaI AGTACT 2 cut(s) 694, 922
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 2 cut(s) 348, 795
SfcI CTRYAG 2 cut(s) 160, 739
SinI GGWCC 3 cut(s) 44, 368, 828
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SspMI CTAG 2 cut(s) 252, 924
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 1 cut(s) 47
TaiI ACGT 2 cut(s) 36, 569
TaqI TCGA 1 cut(s) 376
TaqII GACCGA 1 cut(s) 845
TatI WGTACW 4 cut(s) 81, 486, 692, 920
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 6 cut(s) 177, 458, 756, 810, 903, 999
Tru9I TTAA 6 cut(s) 177, 458, 756, 810, 903, 999
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 2 cut(s) 20, 51
TseI GCWGC 7 cut(s) 159, 240, 281, 289, 741, 907, 910
Tsp45I GTSAC 2 cut(s) 20, 51
TspDTI ATGAA 2 cut(s) 790, 1017
TspRI CASTG 1 cut(s) 543
VpaK11BI GGWCC 3 cut(s) 44, 368, 828
VspI ATTAAT 2 cut(s) 458, 756
XapI RAATTY 3 cut(s) 209, 397, 878
XspI CTAG 2 cut(s) 252, 924
ZraI GACGTC 1 cut(s) 567
ZrmI AGTACT 2 cut(s) 694, 922
Zsp2I ATGCAT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.