Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

17457716 .. 17459639

Gene Structure 1924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1110500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAAAGGACCATGGTCACCTGAAGAAGATGCAAAGCTGAAAGAGTACATAGAAAGATATGGAACTGGAGGGAATTGGATTGCTCTTCCACAGAAAGTTGGTCTTAAGAGATGTGGGAAGAGTTGCAGATTAAGATGGCTAAACTATCTCAGGCCCAACATTAAACATGGTGAATTTTCTGATGAAGAAGATAAAATAATCTGCAACCTCTTTACTAACATTGGAAGCAGGTGGTCAATTATAGCAGCTCAGTTGCCAGGCCGGACTGACAATGACATAAAAAACTACTGGAACACTAAGCTAAAAAAGAAGCTTATGGGCATAAGCATTCTCCCATCCCAGCTTCTAAAATCTCACTCGTCATCATACCGAGGGAACAACACCAGCACTAGCTATTACACACAAACCAGGTCTTTCACCAACACTTTGGAGCCCATTTCTTTTTCACAAAGTCTCATGAGCAGCACTTCTACTAATACTGCTGCTGCTTCTGTACTCCAAGTCCCCCAAGAGAGCTTTGTGGGGAGACACATGCATCAGCAGCATTACCAAGTCAAAGAAAACATCTTGATATTTGGAGGTGAAGCAAGTTGCTGCTCTTCTGATGGGAGTTACAGCAATCATCAGATCAGAGAAAGAGAGTATGAATATGGCGGTGCTTATGGCGGCGGTGGCAGCGGCCGCGGTGGTGCAACTAATGGGGAGGTGAAGTTACACATGGGTTTAAAAAATTATAATTGTTTTACTGGGTTTGGAGGAGAGCAGAAAATTATGGAGAATAATTCCAGTGGAAATGGTGGGATGTGGGAAGATCAAGCACGATTAGACTATGGACTTGAAGAGATTAAGCAGTTACTTAGCAGTACAGGCAGTTGCAACAACTTTTTGTTGGATGAAGACAAGACACAGGAAAAGGTCATGATGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

323

Amino Acids

36.02

Weight (kDa)

8.6

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	3.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	4.1e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	1.2e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	3.4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccII	CGCG	1 cut(s)	720
AciI	CCGC	6 cut(s)	690, 702, 705, 714, 718, 720
AcoI	YGGCCR	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	4 cut(s)	83, 531, 901, 962
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	875
AjnI	CCWGG	2 cut(s)	292, 443
AluBI	AGCT	8 cut(s)	11, 73, 284, 337, 349, 379, 429, 552
AluI	AGCT	8 cut(s)	11, 73, 284, 337, 349, 379, 429, 552
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	494, 556
AoxI	GGCC	3 cut(s)	188, 295, 715
ApeKI	GCWGC	7 cut(s)	281, 498, 518, 521, 577, 630, 711
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	44, 189
AsuHPI	GGTGA	5 cut(s)	45, 218, 445, 629, 754
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	13, 471
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	7 cut(s)	293, 505, 508, 510, 589, 617, 723
BccI	CCATC	3 cut(s)	165, 379, 635
BciT130I	CCWGG	2 cut(s)	294, 445
BcoDI	GTCTC	2 cut(s)	494, 556
BfaI	CTAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	255
Bme1390I	CCNGG	2 cut(s)	294, 445
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 189
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	2 cut(s)	294, 445
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	2 cut(s)	55, 580
BmuI	ACTGGG	1 cut(s)	792
BoxI	GACNNNNGTC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	47, 406, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bse1I	ACTGG	4 cut(s)	106, 329, 787, 822
BseBI	CCWGG	2 cut(s)	294, 445
BseDI	CCNNGG	3 cut(s)	47, 406, 718
BseGI	GGATG	3 cut(s)	371, 843, 934
BseMII	CTCAG	2 cut(s)	199, 299
BseNI	ACTGG	4 cut(s)	106, 329, 787, 822
BseRI	GAGGAG	1 cut(s)	807
BseX3I	CGGCCG	1 cut(s)	715
BseXI	GCAGC	7 cut(s)	293, 505, 508, 510, 589, 617, 723
BseYI	CCCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	720
Bsh1285I	CGRYCG	1 cut(s)	718
BshFI	GGCC	3 cut(s)	190, 297, 717
BsiEI	CGRYCG	1 cut(s)	718
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	494, 556
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	190, 297, 717
Bsp1286I	GDGCHC	2 cut(s)	13, 471
Bsp143I	GATC	2 cut(s)	663, 847
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	6 cut(s)	690, 702, 705, 714, 718, 720
BspANI	GGCC	3 cut(s)	190, 297, 717
BspCNI	CTCAG	2 cut(s)	198, 298
BspFNI	CGCG	1 cut(s)	720
BspHI	TCATGA	2 cut(s)	492, 954
BspLI	GGNNCC	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	2 cut(s)	126, 640
BspTI	CTTAAG	1 cut(s)	140
BsrI	ACTGG	4 cut(s)	106, 329, 787, 822
BssECI	CCNNGG	3 cut(s)	47, 406, 718
BssMI	GATC	2 cut(s)	663, 847
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	294, 445
Bst6I	CTCTTC	4 cut(s)	126, 149, 640, 870
BstAFI	CTTAAG	1 cut(s)	140
BstDEI	CTNAG	4 cut(s)	185, 285, 333, 893
BstDSI	CCRYGG	2 cut(s)	47, 718
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	371, 843, 934
BstFNI	CGCG	1 cut(s)	720
BstKTI	GATC	2 cut(s)	666, 850
BstMAI	GTCTC	2 cut(s)	494, 556
BstMBI	GATC	2 cut(s)	663, 847
BstMCI	CGRYCG	1 cut(s)	718
BstMWI	GCNNNNNNNGC	5 cut(s)	577, 708, 711, 717, 903
BstNI	CCWGG	2 cut(s)	294, 445
BstNSI	RCATGY	1 cut(s)	571
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	292, 443
BstUI	CGCG	1 cut(s)	720
BstV1I	GCAGC	7 cut(s)	293, 505, 508, 510, 589, 617, 723
BstV2I	GAAGAC	1 cut(s)	939
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstZI	CGGCCG	1 cut(s)	715
BsuRI	GGCC	3 cut(s)	190, 297, 717
BtgI	CCRYGG	2 cut(s)	47, 718
BtsCI	GGATG	3 cut(s)	371, 843, 934
BtsIMutI	CAGTG	1 cut(s)	829
BveI	ACCTGC	1 cut(s)	255
CciI	TCATGA	2 cut(s)	492, 954
CciNI	GCGGCCGC	1 cut(s)	715
Cfr13I	GGNCC	2 cut(s)	44, 189
Cfr42I	CCGCGG	1 cut(s)	721
CsiI	ACCWGGT	1 cut(s)	443
Csp6I	GTAC	4 cut(s)	82, 530, 900, 961
CviAII	CATG	6 cut(s)	48, 203, 493, 568, 754, 955
CviQI	GTAC	4 cut(s)	82, 530, 900, 961
DdeI	CTNAG	4 cut(s)	185, 285, 333, 893
DpnI	GATC	2 cut(s)	665, 849
DpnII	GATC	2 cut(s)	663, 847
DraI	TTTAAA	1 cut(s)	762
EaeI	YGGCCR	1 cut(s)	715
EagI	CGGCCG	1 cut(s)	715
Eam1104I	CTCTTC	4 cut(s)	126, 149, 640, 870
EarI	CTCTTC	4 cut(s)	126, 149, 640, 870
Ecl136II	GAGCTC	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	715
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	13, 471
Eco47I	GGWCC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	715
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	292, 443
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	573
EcoT38I	GRGCYC	2 cut(s)	13, 471
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	6 cut(s)	51, 206, 496, 571, 757, 958
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	6 cut(s)	47, 202, 492, 567, 753, 954
FokI	GGATG	3 cut(s)	358, 850, 941
FriOI	GRGCYC	2 cut(s)	13, 471
FspBI	CTAG	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	190, 297, 717
HapII	CCGG	1 cut(s)	298
Hin1II	CATG	6 cut(s)	51, 206, 496, 571, 757, 958
HindIII	AAGCTT	1 cut(s)	347
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	5 cut(s)	45, 218, 445, 629, 754
Hpy188I	TCNGA	4 cut(s)	217, 640, 663, 668
Hpy188III	TCNNGA	3 cut(s)	493, 604, 955
HpyCH4V	TGCA	6 cut(s)	68, 162, 240, 571, 728, 912
HpyF10VI	GCNNNNNNNGC	5 cut(s)	577, 708, 711, 717, 903
HpyF3I	CTNAG	4 cut(s)	185, 285, 333, 893
Hsp92II	CATG	6 cut(s)	51, 206, 496, 571, 757, 958
KspI	CCGCGG	1 cut(s)	721
Kzo9I	GATC	2 cut(s)	663, 847
LguI	GCTCTTC	2 cut(s)	126, 640
LmnI	GCTCC	2 cut(s)	16, 466
Lsp1109I	GCAGC	7 cut(s)	293, 505, 508, 510, 589, 617, 723
LweI	GCATC	2 cut(s)	55, 580
MabI	ACCWGGT	1 cut(s)	443
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	5 cut(s)	20, 51, 647, 747, 888
MalI	GATC	2 cut(s)	665, 849
MboI	GATC	2 cut(s)	663, 847
MhlI	GDGCHC	2 cut(s)	13, 471
MluCI	AATT	7 cut(s)	109, 209, 273, 766, 772, 804, 817
MmeI	TCCRAC	1 cut(s)	906
MnlI	CCTC	6 cut(s)	98, 254, 401, 608, 733, 785
Mph1103I	ATGCAT	1 cut(s)	573
MseI	TTAA	5 cut(s)	141, 167, 198, 761, 882
MspA1I	CMGCKG	2 cut(s)	714, 720
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	294, 445
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	294, 445
MvnI	CGCG	1 cut(s)	720
MwoI	GCNNNNNNNGC	5 cut(s)	577, 708, 711, 717, 903
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	663, 847
NlaIII	CATG	6 cut(s)	51, 206, 496, 571, 757, 958
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	2 cut(s)	20, 51
NotI	GCGGCCGC	1 cut(s)	715
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	1 cut(s)	571
PagI	TCATGA	2 cut(s)	492, 954
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	2 cut(s)	126, 640
PctI	GAATGC	1 cut(s)	363
PshAI	GACNNNNGTC	1 cut(s)	49
PsiI	TTATAA	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	292, 443
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	2 cut(s)	292, 443
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	2 cut(s)	44, 189
RsaI	GTAC	4 cut(s)	83, 531, 901, 962
RsaNI	GTAC	4 cut(s)	82, 530, 900, 961
SacI	GAGCTC	1 cut(s)	13
SacII	CCGCGG	1 cut(s)	721
SapI	GCTCTTC	2 cut(s)	126, 640
SaqAI	TTAA	5 cut(s)	141, 167, 198, 761, 882
Sau3AI	GATC	2 cut(s)	663, 847
Sau96I	GGNCC	2 cut(s)	44, 189
ScrFI	CCNGG	2 cut(s)	294, 445
SduI	GDGCHC	2 cut(s)	13, 471
SexAI	ACCWGGT	1 cut(s)	443
SfaNI	GCATC	2 cut(s)	55, 580
Sfr303I	CCGCGG	1 cut(s)	721
SgrBI	CCGCGG	1 cut(s)	721
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	7 cut(s)	109, 209, 273, 766, 772, 804, 817
SsiI	CCGC	6 cut(s)	690, 702, 705, 714, 718, 720
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	292, 443
StyI	CCWWGG	1 cut(s)	47
TasI	AATT	7 cut(s)	109, 209, 273, 766, 772, 804, 817
TatI	WGTACW	4 cut(s)	81, 529, 899, 960
TauI	GCSGC	3 cut(s)	705, 717, 720
Tru1I	TTAA	5 cut(s)	141, 167, 198, 761, 882
Tru9I	TTAA	5 cut(s)	141, 167, 198, 761, 882
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	7 cut(s)	281, 498, 518, 521, 577, 630, 711
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	3 cut(s)	234, 696, 945
TspRI	CASTG	1 cut(s)	829
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	571
XspI	CTAG	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.