Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG182900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGAGAGCTCCTTGCTGTGACAAGGATAATGTGAAGAAAGGACCATGGTCACCTGAAGAAGATGCAAAGCTTAAAGAGTATATAGAAAAATATGGGACCGGAGGGAATTGGATTGCTCTTCCACAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTAAGATGGCTTAACTATCTCAGGCCCAACATTAAACATGGAGAATTTTCTGATGAAGAAGATAAGATCATCTGCAACCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATTATAGCAGCTCAATTGCCAGGAAGGACCGACAATGATATCAAGAACTACTGGAACACAAAGCTCAAGAAGAAACTCAACCAATATTCCATGATGGGCATAATTCCTCACCACTCCGCCACCTTCTCATCTCTTCTTCATCACCAAACTTCAACCTCATCATCTTCACCACCATCATACAGAAGCAGCAACAACACTAGTACTCCTACTTACTACACACATCAACCCAGGTCTTTCACCAGTACTGCTAATCTGGAATCCCATATTCCATTTTCACCAAGTCTTTTAAGTAGTACCAATACTACTACTAATGCTGCTCTTCAAGTGGGTCAAGAGAGTTATGTGAGTCAACCCTTGACGCAACATTATCAAGCCAAAGATAACATCTTGATGTTTGGGGGTACCACTACTGAAGCAAGCTGCAGTTCTTCTGATGGGAGCTATGGTACTGGTTATAGTGAGGTACAGTTGGGTCTGCAAAACTACTTCTACAATAATGGTGCTGAAGCAAACAACCAGAAAATCATGGTGTCAGATAATGGTCTTGGTCTTGATCTTGATCATGACCAGGCTCCATTAGATTATGGCCTTGAAGAGATCAAGCAGTTAATTAGCAGTAGCACTACTACTAGTGGTGGTTGCAACAACTTTTTGTTTGATGAAAACAAGACAGAGGAAAAGGTCATGATGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

323

Amino Acids

35.98

Weight (kDa)

6.5

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	2.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	5.3e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 119	2.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	674
AciI	CCGC	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	3 cut(s)	78, 705, 798
AfaI	GTAC	7 cut(s)	475, 517, 568, 676, 721, 738, 965
AgsI	TTSAA	3 cut(s)	426, 596, 866
AhlI	ACTAGT	2 cut(s)	470, 902
AjnI	CCWGG	3 cut(s)	292, 500, 840
AluBI	AGCT	7 cut(s)	11, 73, 134, 284, 337, 693, 714
AluI	AGCT	7 cut(s)	11, 73, 134, 284, 337, 693, 714
Alw21I	GWGCWC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	188, 859
ApeKI	GCWGC	4 cut(s)	281, 459, 587, 693
ApoI	RAATTY	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	674
AspS9I	GGNCC	4 cut(s)	44, 99, 189, 300
AsuHPI	GGTGA	6 cut(s)	45, 374, 407, 432, 502, 540
AsuNHI	GCTAGC	1 cut(s)	251
AvaII	GGWCC	3 cut(s)	44, 99, 300
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	293, 471, 574, 680
BccI	CCATC	4 cut(s)	165, 361, 454, 701
BciT130I	CCWGG	3 cut(s)	294, 502, 842
BclI	TGATCA	1 cut(s)	832
BcuI	ACTAGT	2 cut(s)	470, 902
BfaI	CTAG	3 cut(s)	252, 471, 903
BfmI	CTRYAG	1 cut(s)	694
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	282, 460, 588, 694
BlsI	GCNGC	4 cut(s)	283, 461, 589, 695
BmcAI	AGTACT	2 cut(s)	475, 517
Bme1390I	CCNGG	3 cut(s)	294, 502, 842
Bme18I	GGWCC	3 cut(s)	44, 99, 300
BmgT120I	GGNCC	4 cut(s)	44, 99, 189, 300
BmiI	GGNNCC	3 cut(s)	100, 676, 846
BmrFI	CCNGG	3 cut(s)	294, 502, 842
BmsI	GCATC	1 cut(s)	55
BmtI	GCTAGC	1 cut(s)	255
BoxI	GACNNNNGTC	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	831
BsaJI	CCNNGG	2 cut(s)	47, 500
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	4 cut(s)	460, 490, 703, 733
Bse1I	ACTGG	3 cut(s)	329, 513, 727
Bse8I	GATNNNNATC	1 cut(s)	831
BseBI	CCWGG	3 cut(s)	294, 502, 842
BseDI	CCNNGG	2 cut(s)	47, 500
BseJI	GATNNNNATC	1 cut(s)	831
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	3 cut(s)	329, 513, 727
BseXI	GCAGC	4 cut(s)	293, 471, 574, 680
BshFI	GGCC	2 cut(s)	190, 861
BshNI	GGYRCC	1 cut(s)	674
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	190, 861
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	231, 826, 832, 870
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	2 cut(s)	190, 861
BspCNI	CTCAG	1 cut(s)	198
BspHI	TCATGA	2 cut(s)	835, 957
BspLI	GGNNCC	3 cut(s)	100, 676, 846
BspMAI	CTGCAG	1 cut(s)	698
BspMI	ACCTGC	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	255
BspQI	GCTCTTC	2 cut(s)	126, 597
BspT107I	GGYRCC	1 cut(s)	674
BsrI	ACTGG	3 cut(s)	329, 513, 727
BssECI	CCNNGG	2 cut(s)	47, 500
BssMI	GATC	4 cut(s)	231, 826, 832, 870
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	3 cut(s)	294, 502, 842
Bst4CI	ACNGT	1 cut(s)	741
Bst6I	CTCTTC	4 cut(s)	126, 411, 597, 861
BstC8I	GCNNGC	2 cut(s)	253, 691
BstDEI	CTNAG	2 cut(s)	140, 185
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstKTI	GATC	4 cut(s)	234, 829, 835, 873
BstMBI	GATC	4 cut(s)	231, 826, 832, 870
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	3 cut(s)	294, 502, 842
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	292, 500, 840
BstSFI	CTRYAG	1 cut(s)	694
BstV1I	GCAGC	4 cut(s)	293, 471, 574, 680
BsuRI	GGCC	2 cut(s)	190, 861
BtgI	CCRYGG	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	253, 691
CciI	TCATGA	2 cut(s)	835, 957
Cfr13I	GGNCC	4 cut(s)	44, 99, 189, 300
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	7 cut(s)	474, 516, 567, 675, 720, 737, 964
CviAII	CATG	6 cut(s)	48, 203, 364, 799, 836, 958
CviQI	GTAC	7 cut(s)	474, 516, 567, 675, 720, 737, 964
DdeI	CTNAG	2 cut(s)	140, 185
DpnI	GATC	4 cut(s)	233, 828, 834, 872
DpnII	GATC	4 cut(s)	231, 826, 832, 870
Eam1104I	CTCTTC	4 cut(s)	126, 411, 597, 861
EarI	CTCTTC	4 cut(s)	126, 411, 597, 861
EciI	GGCGGA	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	3 cut(s)	44, 99, 300
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	3 cut(s)	78, 705, 798
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	292, 500, 840
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	6 cut(s)	51, 206, 367, 802, 839, 961
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	6 cut(s)	47, 202, 363, 798, 835, 957
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	4 cut(s)	282, 460, 588, 694
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	282, 460, 588, 694
FspBI	CTAG	3 cut(s)	252, 471, 903
GluI	GCNGC	4 cut(s)	282, 460, 588, 694
HaeIII	GGCC	2 cut(s)	190, 861
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	640
Hin1II	CATG	6 cut(s)	51, 206, 367, 802, 839, 961
HincII	GTYRAC	1 cut(s)	623
HindII	GTYRAC	1 cut(s)	623
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	530, 619
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	6 cut(s)	45, 374, 407, 432, 502, 540
Hpy166II	GTNNAC	1 cut(s)	623
Hpy188I	TCNGA	3 cut(s)	217, 706, 808
Hpy188III	TCNNGA	9 cut(s)	316, 340, 527, 605, 661, 824, 830, 836, 958
Hpy8I	GTNNAC	1 cut(s)	623
HpyAV	CCTTC	2 cut(s)	291, 406
HpyCH4III	ACNGT	1 cut(s)	741
HpyCH4V	TGCA	6 cut(s)	68, 162, 240, 696, 751, 915
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	2 cut(s)	140, 185
Hsp92II	CATG	6 cut(s)	51, 206, 367, 802, 839, 961
KpnI	GGTACC	1 cut(s)	678
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	4 cut(s)	231, 826, 832, 870
LguI	GCTCTTC	2 cut(s)	126, 597
LmnI	GCTCC	3 cut(s)	16, 711, 850
Lsp1109I	GCAGC	4 cut(s)	293, 471, 574, 680
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	3 cut(s)	252, 471, 903
MaeIII	GTNAC	2 cut(s)	20, 51
MalI	GATC	4 cut(s)	233, 828, 834, 872
MboI	GATC	4 cut(s)	231, 826, 832, 870
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	6 cut(s)	109, 209, 273, 287, 375, 882
MlyI	GAGTC	1 cut(s)	628
MnlI	CCTC	6 cut(s)	98, 254, 390, 439, 727, 940
MseI	TTAA	6 cut(s)	75, 167, 177, 198, 560, 881
MslI	CAYNNNNRTG	1 cut(s)	662
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	294, 502, 842
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	3 cut(s)	294, 502, 842
MwoI	GCNNNNNNNGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	231, 826, 832, 870
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	6 cut(s)	51, 206, 367, 802, 839, 961
NlaIV	GGNNCC	3 cut(s)	100, 676, 846
NmuCI	GTSAC	2 cut(s)	20, 51
PagI	TCATGA	2 cut(s)	835, 957
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	2 cut(s)	126, 597
PfeI	GAWTC	1 cut(s)	530
PkrI	GCNGC	4 cut(s)	283, 461, 589, 695
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
PshAI	GACNNNNGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	3 cut(s)	292, 500, 840
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	292, 500, 840
PspN4I	GGNNCC	3 cut(s)	100, 676, 846
PspPI	GGNCC	4 cut(s)	44, 99, 189, 300
PstI	CTGCAG	1 cut(s)	698
RsaI	GTAC	7 cut(s)	475, 517, 568, 676, 721, 738, 965
RsaNI	GTAC	7 cut(s)	474, 516, 567, 675, 720, 737, 964
RseI	CAYNNNNRTG	1 cut(s)	662
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	2 cut(s)	126, 597
SaqAI	TTAA	6 cut(s)	75, 167, 177, 198, 560, 881
SatI	GCNGC	4 cut(s)	282, 460, 588, 694
Sau3AI	GATC	4 cut(s)	231, 826, 832, 870
Sau96I	GGNCC	4 cut(s)	44, 99, 189, 300
ScaI	AGTACT	2 cut(s)	475, 517
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	3 cut(s)	294, 502, 842
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	1 cut(s)	694
SinI	GGWCC	3 cut(s)	44, 99, 300
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SpeI	ACTAGT	2 cut(s)	470, 902
Sse9I	AATT	6 cut(s)	109, 209, 273, 287, 375, 882
SsiI	CCGC	1 cut(s)	390
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	3 cut(s)	252, 471, 903
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	3 cut(s)	292, 500, 840
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	741
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	6 cut(s)	109, 209, 273, 287, 375, 882
TatI	WGTACW	3 cut(s)	473, 515, 963
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	6 cut(s)	75, 167, 177, 198, 560, 881
Tru9I	TTAA	6 cut(s)	75, 167, 177, 198, 560, 881
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	4 cut(s)	281, 459, 587, 693
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	3 cut(s)	234, 401, 948
VpaK11BI	GGWCC	3 cut(s)	44, 99, 300
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	3 cut(s)	252, 471, 903
ZrmI	AGTACT	2 cut(s)	475, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.