Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

36014300 .. 36018555

Gene Structure 4256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAGGCGCTTGAGGTGGTGCTGTTGCGGCCAGCACTTTCACCGCCAGCTGAGTTCATACCGGACTAATTACACTATGACCACTCATGAAATGCCGCAACACCGGAATCCAATGCCCGATTTCGGCAAGTTTTCACTTATAAGGCATCGTTCAGAGAGTATTATTGACGATACCTTATTTGTGAAGGAGGACTTCTGCCGGCTCGAACTTCTAGGTGGACAGCCTATGCATTTCTTTGCTGTCTTTGATGCTCAAGGAGACCCTCATGTGTCCACGCTGTGCAAACAATTGATGCACCAATGCGTGGCGGCGGAGCTGCGGCGCGTGTGCAGCACTCCAGGGCTTGGTGAGAACTTGAGCATGGGTTTGGAAACGGGAAACGAGCAGCAGGAAGGGGAGGAGGCCAAGTGGCATGATCTGGTGCGAACAGCCCTAGAGAGGAGCTTTCAGAGGATGAACCGTCTCAGGCAACACACTTGCACGTGTGGGAACATTACTGATGATTGCAGGTGTGGATTCATGATCCTCACGCCGCCAGTTGCGGCTGTTGTGGCAATCTTAACAGCTCGGAATATTGTCATTGCTAACTCCGGTACCTCACGCGCCGTCCTTGGTCTTGCCGGGAGTTCTTTACCACTCTTTGATAATTCCAAGCCTGAAAGACTAGATGTACAAGAAAGGCTTCGTGCAGTAGATGGTCGGGTTTTCCATCACAACGGCATGCGTGTATATGGAATTCTTAACATGTCTCATTCCGCAGTGCAAACAGGGGATCACTACCTTCTGAATATTTCCATCACAGAAAGAGAGGGAAATGAAGATGAATGCTTGATTCTAGCCAATCATGGTATTTGGGATGCTATATCAGATGACATGGCTTGCAGGGTAGCTAGAACATGTCTCACATTTGAAGACGGGGAAGCTGCTAGAGCTCTAGCCAAAGATGGTCGTCTTTATGGTCCAGACACATGCGATCATGAGAAGTTTTTCTCTTCCAAAACTAACAGTGCAGCTGCAATACTCTGCCGCCTCGCTTTGGGCCGTGGCAGTCGAGGCGATATAAGTGTCATTGTTGTCGATTTAATGGTTAGGTGGAAGTCAAGGCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

370

Amino Acids

41.61

Weight (kDa)

7.22

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	58 - 320	7.4e-19	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AarI	CACCTGC	1 cut(s)	498
Acc36I	ACCTGC	1 cut(s)	498
Acc65I	GGTACC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	593
AccB7I	CCANNNNNTGG	2 cut(s)	304, 344
AccII	CGCG	2 cut(s)	324, 603
AclWI	GGATC	2 cut(s)	517, 780
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	735
AcvI	CACGTG	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	279
AfaI	GTAC	2 cut(s)	595, 672
AfiI	CCNNNNNNNGG	5 cut(s)	122, 304, 344, 438, 1036
AflIII	ACRYGT	3 cut(s)	482, 744, 896
AgsI	TTSAA	1 cut(s)	911
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	8 cut(s)	49, 316, 444, 566, 890, 923, 932, 1013
AluI	AGCT	8 cut(s)	49, 316, 444, 566, 890, 923, 932, 1013
Alw21I	GWGCWC	1 cut(s)	934
Alw26I	GTCTC	4 cut(s)	252, 467, 753, 905
AlwI	GGATC	2 cut(s)	517, 780
AoxI	GGCC	3 cut(s)	28, 402, 1039
ApeKI	GCWGC	6 cut(s)	316, 330, 385, 923, 1010, 1013
ApoI	RAATTY	1 cut(s)	735
Asp700I	GAANNNNTTC	2 cut(s)	681, 986
Asp718I	GGTACC	1 cut(s)	593
AspLEI	GCGC	3 cut(s)	9, 324, 605
AspS9I	GGNCC	2 cut(s)	959, 1039
AsuC2I	CCSGG	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	32, 359
AvaII	GGWCC	1 cut(s)	959
BaeI	ACNNNNGTAYC	2 cut(s)	577, 610
BanI	GGYRCC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	934
BbrPI	CACGTG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	918
Bbv12I	GWGCWC	1 cut(s)	934
BbvI	GCAGC	6 cut(s)	303, 342, 397, 910, 1000, 1022
BccI	CCATC	4 cut(s)	689, 717, 803, 938
BceAI	ACGGC	3 cut(s)	590, 733, 1026
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	622
BcoDI	GTCTC	4 cut(s)	252, 467, 753, 905
BfaI	CTAG	7 cut(s)	212, 434, 665, 836, 891, 927, 935
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	498
Bme1390I	CCNGG	2 cut(s)	339, 622
Bme18I	GGWCC	1 cut(s)	959
BmgT120I	GGNCC	2 cut(s)	959, 1039
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	2 cut(s)	339, 622
BmsI	GCATC	4 cut(s)	154, 238, 282, 847
BpiI	GAAGAC	1 cut(s)	918
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	3 cut(s)	31, 237, 376
BpuMI	CCSGG	1 cut(s)	622
BsaAI	YACGTR	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	338, 610, 1042
BsaWI	WCCGGW	3 cut(s)	60, 102, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 304, 344, 438, 1036
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	338, 610, 1042
BseGI	GGATG	2 cut(s)	459, 862
BseLI	CCNNNNNNNGG	5 cut(s)	122, 304, 344, 438, 1036
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	41, 478
BseNI	ACTGG	1 cut(s)	536
BseRI	GAGGAG	2 cut(s)	413, 454
BseXI	GCAGC	6 cut(s)	303, 342, 397, 910, 1000, 1022
BsgI	GTGCAG	3 cut(s)	349, 708, 1029
Bsh1236I	CGCG	2 cut(s)	324, 603
BshFI	GGCC	3 cut(s)	30, 404, 1041
BshNI	GGYRCC	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	934
BsiSI	CCGG	5 cut(s)	61, 103, 199, 591, 621
BslI	CCNNNNNNNGG	5 cut(s)	122, 304, 344, 438, 1036
BsmAI	GTCTC	4 cut(s)	252, 467, 753, 905
BsmBI	CGTCTC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	3 cut(s)	30, 404, 1041
Bso31I	GGTCTC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	934
Bsp1407I	TGTACA	1 cut(s)	670
Bsp143I	GATC	4 cut(s)	415, 522, 772, 973
BspANI	GGCC	3 cut(s)	30, 404, 1041
BspCNI	CTCAG	2 cut(s)	42, 477
BspFNI	CGCG	2 cut(s)	324, 603
BspHI	TCATGA	3 cut(s)	85, 519, 976
BspLI	GGNNCC	1 cut(s)	595
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	2 cut(s)	517, 780
BspT107I	GGYRCC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	579
BsrFI	RCCGGY	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	670
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	3 cut(s)	338, 610, 1042
BssMI	GATC	4 cut(s)	415, 522, 772, 973
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	461, 1007
Bst6I	CTCTTC	1 cut(s)	997
BstAUI	TGTACA	1 cut(s)	670
BstBAI	YACGTR	1 cut(s)	483
BstC8I	GCNNGC	5 cut(s)	32, 47, 200, 722, 880
BstDEI	CTNAG	2 cut(s)	50, 464
BstDSI	CCRYGG	1 cut(s)	1042
BstF5I	GGATG	2 cut(s)	459, 862
BstFNI	CGCG	2 cut(s)	324, 603
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	3 cut(s)	9, 324, 605
BstKTI	GATC	4 cut(s)	418, 525, 775, 976
BstMAI	GTCTC	4 cut(s)	252, 467, 753, 905
BstMBI	GATC	4 cut(s)	415, 522, 772, 973
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 330, 551, 929, 1053
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	4 cut(s)	724, 748, 900, 972
BstSCI	CCNGG	2 cut(s)	337, 620
BstUI	CGCG	2 cut(s)	324, 603
BstV1I	GCAGC	6 cut(s)	303, 342, 397, 910, 1000, 1022
BstV2I	GAAGAC	1 cut(s)	918
BsuRI	GGCC	3 cut(s)	30, 404, 1041
BtgI	CCRYGG	1 cut(s)	1042
BtsCI	GGATG	2 cut(s)	459, 862
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	2 cut(s)	765, 1012
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	5 cut(s)	32, 47, 200, 722, 880
CciI	TCATGA	3 cut(s)	85, 519, 976
CfoI	GCGC	3 cut(s)	9, 324, 605
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	959, 1039
Csp6I	GTAC	2 cut(s)	594, 671
CviQI	GTAC	2 cut(s)	594, 671
DdeI	CTNAG	2 cut(s)	50, 464
DpnI	GATC	4 cut(s)	417, 524, 774, 975
DpnII	GATC	4 cut(s)	415, 522, 772, 973
DraIII	CACNNNGTG	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	997
EarI	CTCTTC	1 cut(s)	997
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	932
Eco130I	CCWWGG	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	934
Eco31I	GGTCTC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	959
Eco53kI	GAGCTC	1 cut(s)	932
Eco72I	CACGTG	1 cut(s)	483
EcoICRI	GAGCTC	1 cut(s)	932
EcoRI	GAATTC	1 cut(s)	735
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	610
Esp3I	CGTCTC	1 cut(s)	467
FalI	AAGNNNNNCTT	4 cut(s)	176, 208, 666, 698
FokI	GGATG	2 cut(s)	466, 869
FriOI	GRGCYC	1 cut(s)	934
FspBI	CTAG	7 cut(s)	212, 434, 665, 836, 891, 927, 935
GlaI	GCGC	3 cut(s)	8, 323, 604
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	3 cut(s)	30, 404, 1041
HapII	CCGG	5 cut(s)	61, 103, 199, 591, 621
HhaI	GCGC	3 cut(s)	9, 324, 605
Hin6I	GCGC	3 cut(s)	7, 322, 603
HinP1I	GCGC	3 cut(s)	7, 322, 603
HinfI	GANTC	3 cut(s)	106, 516, 832
HpaII	CCGG	5 cut(s)	61, 103, 199, 591, 621
HphI	GGTGA	2 cut(s)	32, 359
Hpy166II	GTNNAC	2 cut(s)	218, 273
Hpy188I	TCNGA	5 cut(s)	154, 450, 570, 786, 868
Hpy188III	TCNNGA	4 cut(s)	86, 520, 962, 977
Hpy8I	GTNNAC	2 cut(s)	218, 273
HpyAV	CCTTC	3 cut(s)	178, 386, 791
HpyCH4III	ACNGT	2 cut(s)	461, 1007
HpyCH4IV	ACGT	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 330, 551, 929, 1053
HpyF3I	CTNAG	2 cut(s)	50, 464
HpySE526I	ACGT	1 cut(s)	482
HspAI	GCGC	3 cut(s)	7, 322, 603
KpnI	GGTACC	1 cut(s)	597
KroI	GCCGGC	1 cut(s)	198
KroNI	GCCGGC	1 cut(s)	200
Kzo9I	GATC	4 cut(s)	415, 522, 772, 973
LmnI	GCTCC	2 cut(s)	313, 441
Lsp1109I	GCAGC	6 cut(s)	303, 342, 397, 910, 1000, 1022
LweI	GCATC	4 cut(s)	154, 238, 282, 847
MaeI	CTAG	7 cut(s)	212, 434, 665, 836, 891, 927, 935
MaeII	ACGT	1 cut(s)	482
MalI	GATC	4 cut(s)	417, 524, 774, 975
MboI	GATC	4 cut(s)	415, 522, 772, 973
MboII	GAAGA	3 cut(s)	830, 923, 984
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	934
MluCI	AATT	4 cut(s)	67, 287, 646, 735
Mph1103I	ATGCAT	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	198
MroXI	GAANNNNTTC	2 cut(s)	681, 986
MseI	TTAA	3 cut(s)	560, 741, 1082
MspA1I	CMGCKG	2 cut(s)	49, 1013
MspI	CCGG	5 cut(s)	61, 103, 199, 591, 621
MspR9I	CCNGG	2 cut(s)	339, 622
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	2 cut(s)	324, 603
MwoI	GCNNNNNNNGC	5 cut(s)	27, 330, 551, 929, 1053
NaeI	GCCGGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	622
NdeII	GATC	4 cut(s)	415, 522, 772, 973
NgoMIV	GCCGGC	1 cut(s)	198
NlaIV	GGNNCC	1 cut(s)	595
NsiI	ATGCAT	1 cut(s)	231
NspI	RCATGY	4 cut(s)	724, 748, 900, 972
PaeI	GCATGC	1 cut(s)	724
PagI	TCATGA	3 cut(s)	85, 519, 976
PaqCI	CACCTGC	1 cut(s)	498
PciI	ACATGT	2 cut(s)	744, 896
PctI	GAATGC	1 cut(s)	830
PdiI	GCCGGC	1 cut(s)	200
PdmI	GAANNNNTTC	2 cut(s)	681, 986
PfeI	GAWTC	3 cut(s)	106, 516, 832
PflMI	CCANNNNNTGG	2 cut(s)	304, 344
PmaCI	CACGTG	1 cut(s)	483
PmlI	CACGTG	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	483
PscI	ACATGT	2 cut(s)	744, 896
PsiI	TTATAA	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	934
Psp6I	CCWGG	1 cut(s)	337
PspCI	CACGTG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	959, 1039
PvuII	CAGCTG	2 cut(s)	49, 1013
RsaI	GTAC	2 cut(s)	595, 672
RsaNI	GTAC	2 cut(s)	594, 671
SacI	GAGCTC	1 cut(s)	934
SaqAI	TTAA	3 cut(s)	560, 741, 1082
Sau3AI	GATC	4 cut(s)	415, 522, 772, 973
Sau96I	GGNCC	2 cut(s)	959, 1039
ScrFI	CCNGG	2 cut(s)	339, 622
SduI	GDGCHC	1 cut(s)	934
SfaNI	GCATC	4 cut(s)	154, 238, 282, 847
SinI	GGWCC	1 cut(s)	959
SmlI	CTYRAG	3 cut(s)	10, 252, 355
SmoI	CTYRAG	3 cut(s)	10, 252, 355
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	4 cut(s)	67, 287, 646, 735
SspI	AATATT	2 cut(s)	574, 790
SspMI	CTAG	7 cut(s)	212, 434, 665, 836, 891, 927, 935
SstI	GAGCTC	1 cut(s)	934
StyD4I	CCNGG	2 cut(s)	337, 620
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	461, 1007
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	204, 1051, 1077
TasI	AATT	4 cut(s)	67, 287, 646, 735
TatI	WGTACW	1 cut(s)	670
TauI	GCSGC	7 cut(s)	30, 97, 311, 322, 535, 545, 1029
TfiI	GAWTC	3 cut(s)	106, 516, 832
Tru1I	TTAA	3 cut(s)	560, 741, 1082
Tru9I	TTAA	3 cut(s)	560, 741, 1082
TscAI	CASTG	2 cut(s)	765, 1012
TseI	GCWGC	6 cut(s)	316, 330, 385, 923, 1010, 1013
TspDTI	ATGAA	6 cut(s)	45, 102, 470, 508, 831, 837
TspRI	CASTG	2 cut(s)	765, 1012
Van91I	CCANNNNNTGG	2 cut(s)	304, 344
VpaK11BI	GGWCC	1 cut(s)	959
XapI	RAATTY	1 cut(s)	735
XceI	RCATGY	4 cut(s)	724, 748, 900, 972
XmnI	GAANNNNTTC	2 cut(s)	681, 986
XspI	CTAG	7 cut(s)	212, 434, 665, 836, 891, 927, 935
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.