Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Reverse (-)

28396601 .. 28398660

Gene Structure 2060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00022930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGAAGGGCTCCTTGTTGTGACAAGGCAAATGTTAAGAAGGGACCATGGTCACCAGAAGAAGACTCAAAGCTCAAAGAATACATTGACAAATATGGTACTGGTGGAAATTGGATCGCTCTCCCTCAGAAAGCTGGTTTGAAGAGATGTGGAAAAAGCTGCAGATTGAGATGGCTTAACTATCTGAGGCCAAACATCAAACATGGAGAATTTTCTGAGGAGGAAGACAGAATAATTTGCACCCTCTTTACTAGCATTGGAAGCAGGTGGTCGATTATAGCAGCTCAGCTGCCAGGAAGGACCGACAATGATATCAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCAGGGATATGCAGACTCATATGGCTCCTCCTTCATTAACAACTTCTCAGAGTCATAGATCAAAGCCTCCCCCATTTCCTGTTTCTTCCTCTCTTCACCAATTTCAAAACCAACCATTTCATCATCAACCTCTCTCACTCATGCACAAAGACCTTAACATGATGACTTACAGTACTTACACCCCAACCTTAACAAGCCCTGCTACTCCGGGATCTTTCTCATCAGGCTTTGAAATAATGCCAAACATTTCAACCCCTCTCACCAACTACTCCCCCCTTTTTCAAACTCAAGAGTGCCTTGTGGGTTCCATGCACTACAATCACCCAGCTGTGAAGAAAAATCTAAACCTCATCATGTTTGGAAGTGAAGGAAGCTGCAGTACTTCATCTGATGGGAGCTGTAACAACAATCAGATCAGCTATGAGTCCAGGCGATCAGGAAATATCAAACAAGAGGAAATGGGTATGGGTTTTCAGCTTGAAGATCAGAACCAGAAGTTCATGATGCTTAACTATGGAAACAGTAGTAGTGCTGCAATATCAGGTGATCATCATAACTATATCAACAACAACAACAACAACCAATGGGGTGAGAGGCCAAATGGGTACAATGGTAATAATACCCGTTTCGGAGATTATGATCTTGAAGATGTTAAGCAGCTGATTAGTAGTAGTAGCACTGATATTAATATCAATATTAATAATGATAATGGGTCTATATCTAACAGCTTGTTCAGTGTTGATGAAAACAAGACTGATCATACAGAGAAGGTGATGTATTTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

378

Amino Acids

42.71

Weight (kDa)

8.03

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	8.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.9e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	6.7e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 118	1.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AclWI	GGATC	2 cut(s)	122, 568
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	4 cut(s)	100, 523, 730, 956
AgsI	TTSAA	7 cut(s)	142, 455, 581, 600, 632, 830, 995
AjnI	CCWGG	2 cut(s)	292, 776
AlwI	GGATC	2 cut(s)	122, 568
AoxI	GGCC	2 cut(s)	188, 944
ApeKI	GCWGC	6 cut(s)	159, 281, 289, 723, 881, 1006
ApoI	RAATTY	1 cut(s)	209
AseI	ATTAAT	2 cut(s)	1035, 1047
AspS9I	GGNCC	2 cut(s)	44, 300
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	7 cut(s)	45, 437, 601, 662, 905, 950, 1132
AvaII	GGWCC	2 cut(s)	44, 300
BaeI	ACNNNNGTAYC	2 cut(s)	946, 979
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	712, 744
BbsI	GAAGAC	2 cut(s)	69, 231
BbvI	GCAGC	6 cut(s)	146, 276, 293, 710, 868, 1018
BccI	CCATC	2 cut(s)	165, 734
BciT130I	CCWGG	2 cut(s)	294, 778
BclI	TGATCA	2 cut(s)	895, 1105
BcnI	CCSGG	1 cut(s)	558
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	2 cut(s)	160, 724
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	6 cut(s)	160, 282, 290, 724, 882, 1007
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	6 cut(s)	161, 283, 291, 725, 883, 1008
BmcAI	AGTACT	2 cut(s)	523, 730
Bme1390I	CCNGG	3 cut(s)	294, 558, 778
Bme18I	GGWCC	2 cut(s)	44, 300
BmgT120I	GGNCC	2 cut(s)	44, 300
BmiI	GGNNCC	4 cut(s)	12, 45, 375, 655
BmrFI	CCNGG	3 cut(s)	294, 558, 778
BmsI	GCATC	1 cut(s)	843
BoxI	GACNNNNGTC	1 cut(s)	49
BpiI	GAAGAC	2 cut(s)	69, 231
Bpu10I	CCTNAGC	1 cut(s)	350
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	987
BsaJI	CCNNGG	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	106, 329
Bse8I	GATNNNNATC	1 cut(s)	987
BseBI	CCWGG	2 cut(s)	294, 778
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	987
BseMII	CTCAG	6 cut(s)	140, 176, 207, 299, 364, 410
BseNI	ACTGG	2 cut(s)	106, 329
BseRI	GAGGAG	2 cut(s)	233, 366
BseXI	GCAGC	6 cut(s)	146, 276, 293, 710, 868, 1018
BseYI	CCCAGC	1 cut(s)	673
BshFI	GGCC	2 cut(s)	190, 946
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	2 cut(s)	190, 946
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	9 cut(s)	114, 407, 560, 762, 782, 832, 895, 988, 1105
Bsp1720I	GCTNAGC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	2 cut(s)	190, 946
BspCNI	CTCAG	6 cut(s)	139, 177, 208, 298, 363, 409
BspHI	TCATGA	1 cut(s)	849
BspLI	GGNNCC	4 cut(s)	12, 45, 375, 655
BspMAI	CTGCAG	2 cut(s)	164, 728
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	2 cut(s)	122, 568
BsrI	ACTGG	2 cut(s)	106, 329
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	9 cut(s)	114, 407, 560, 762, 782, 832, 895, 988, 1105
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	294, 778
Bst4CI	ACNGT	2 cut(s)	521, 872
Bst6I	CTCTTC	2 cut(s)	137, 447
BstDEI	CTNAG	6 cut(s)	126, 185, 216, 285, 350, 396
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstKTI	GATC	9 cut(s)	117, 410, 563, 765, 785, 835, 898, 991, 1108
BstMBI	GATC	9 cut(s)	114, 407, 560, 762, 782, 832, 895, 988, 1105
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	2 cut(s)	294, 778
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	292, 556, 776
BstSFI	CTRYAG	2 cut(s)	160, 724
BstV1I	GCAGC	6 cut(s)	146, 276, 293, 710, 868, 1018
BstV2I	GAAGAC	2 cut(s)	69, 231
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	190, 946
BtgI	CCRYGG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	1026, 1090
BveI	ACCTGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	849
Cfr13I	GGNCC	2 cut(s)	44, 300
Csp6I	GTAC	4 cut(s)	99, 522, 729, 955
CviAII	CATG	7 cut(s)	48, 203, 490, 508, 658, 703, 850
CviQI	GTAC	4 cut(s)	99, 522, 729, 955
DdeI	CTNAG	6 cut(s)	126, 185, 216, 285, 350, 396
DpnI	GATC	9 cut(s)	116, 409, 562, 764, 784, 834, 897, 990, 1107
DpnII	GATC	9 cut(s)	114, 407, 560, 762, 782, 832, 895, 988, 1105
Eam1104I	CTCTTC	2 cut(s)	137, 447
EarI	CTCTTC	2 cut(s)	137, 447
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	44, 300
Eco57I	CTGAAG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	292, 776
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	7 cut(s)	51, 206, 493, 511, 661, 706, 853
FalI	AAGNNNNNCTT	3 cut(s)	30, 630, 662
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	7 cut(s)	47, 202, 489, 507, 657, 702, 849
FauNDI	CATATG	1 cut(s)	369
FbaI	TGATCA	2 cut(s)	895, 1105
Fnu4HI	GCNGC	6 cut(s)	160, 282, 290, 724, 882, 1007
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	6 cut(s)	160, 282, 290, 724, 882, 1007
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	6 cut(s)	160, 282, 290, 724, 882, 1007
GsaI	CCCAGC	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	190, 946
HapII	CCGG	1 cut(s)	557
Hin1II	CATG	7 cut(s)	51, 206, 493, 511, 661, 706, 853
HinfI	GANTC	4 cut(s)	65, 364, 400, 773
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	7 cut(s)	45, 437, 601, 662, 905, 950, 1132
Hpy188I	TCNGA	8 cut(s)	129, 186, 217, 399, 739, 762, 837, 980
Hpy188III	TCNNGA	5 cut(s)	316, 638, 786, 850, 992
HpyAV	CCTTC	5 cut(s)	34, 291, 390, 710, 1111
HpyCH4III	ACNGT	2 cut(s)	521, 872
HpyCH4V	TGCA	7 cut(s)	162, 240, 361, 493, 661, 726, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	6 cut(s)	126, 185, 216, 285, 350, 396
Hsp92II	CATG	7 cut(s)	51, 206, 493, 511, 661, 706, 853
Ksp22I	TGATCA	2 cut(s)	895, 1105
Kzo9I	GATC	9 cut(s)	114, 407, 560, 762, 782, 832, 895, 988, 1105
LmnI	GCTCC	3 cut(s)	16, 379, 744
Lsp1109I	GCAGC	6 cut(s)	146, 276, 293, 710, 868, 1018
LweI	GCATC	1 cut(s)	843
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	20, 51, 749
MalI	GATC	9 cut(s)	116, 409, 562, 764, 784, 834, 897, 990, 1107
MboI	GATC	9 cut(s)	114, 407, 560, 762, 782, 832, 895, 988, 1105
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	4 cut(s)	109, 209, 234, 449
MlyI	GAGTC	4 cut(s)	59, 358, 409, 782
MseI	TTAA	9 cut(s)	36, 177, 386, 504, 539, 858, 1002, 1035, 1047
MspA1I	CMGCKG	3 cut(s)	289, 677, 1009
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	3 cut(s)	294, 558, 778
MvaI	CCWGG	2 cut(s)	294, 778
MwoI	GCNNNNNNNGC	1 cut(s)	261
NciI	CCSGG	1 cut(s)	558
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	9 cut(s)	114, 407, 560, 762, 782, 832, 895, 988, 1105
NlaIII	CATG	7 cut(s)	51, 206, 493, 511, 661, 706, 853
NlaIV	GGNNCC	4 cut(s)	12, 45, 375, 655
NmuCI	GTSAC	2 cut(s)	20, 51
PagI	TCATGA	1 cut(s)	849
PaqCI	CACCTGC	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	6 cut(s)	161, 283, 291, 725, 883, 1008
PleI	GAGTC	4 cut(s)	59, 358, 408, 781
PpsI	GAGTC	4 cut(s)	59, 358, 408, 781
PshAI	GACNNNNGTC	1 cut(s)	49
PshBI	ATTAAT	2 cut(s)	1035, 1047
Psp6I	CCWGG	2 cut(s)	292, 776
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	2 cut(s)	292, 776
PspN4I	GGNNCC	4 cut(s)	12, 45, 375, 655
PspPI	GGNCC	2 cut(s)	44, 300
PstI	CTGCAG	2 cut(s)	164, 728
PsuI	RGATCY	1 cut(s)	560
PvuII	CAGCTG	3 cut(s)	289, 677, 1009
RsaI	GTAC	4 cut(s)	100, 523, 730, 956
RsaNI	GTAC	4 cut(s)	99, 522, 729, 955
SaqAI	TTAA	9 cut(s)	36, 177, 386, 504, 539, 858, 1002, 1035, 1047
SatI	GCNGC	6 cut(s)	160, 282, 290, 724, 882, 1007
Sau3AI	GATC	9 cut(s)	114, 407, 560, 762, 782, 832, 895, 988, 1105
Sau96I	GGNCC	2 cut(s)	44, 300
ScaI	AGTACT	2 cut(s)	523, 730
SchI	GAGTC	4 cut(s)	59, 358, 409, 782
ScrFI	CCNGG	3 cut(s)	294, 558, 778
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	843
SfcI	CTRYAG	2 cut(s)	160, 724
SinI	GGWCC	2 cut(s)	44, 300
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
Sse9I	AATT	4 cut(s)	109, 209, 234, 449
SspI	AATATT	1 cut(s)	1045
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	3 cut(s)	292, 556, 776
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	521, 872
TaqI	TCGA	1 cut(s)	272
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	4 cut(s)	109, 209, 234, 449
TatI	WGTACW	2 cut(s)	521, 728
Tru1I	TTAA	9 cut(s)	36, 177, 386, 504, 539, 858, 1002, 1035, 1047
Tru9I	TTAA	9 cut(s)	36, 177, 386, 504, 539, 858, 1002, 1035, 1047
TscAI	CASTG	2 cut(s)	1033, 1090
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	6 cut(s)	159, 281, 289, 723, 881, 1006
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	5 cut(s)	372, 458, 723, 838, 1107
TspRI	CASTG	2 cut(s)	1033, 1090
VpaK11BI	GGWCC	2 cut(s)	44, 300
VspI	ATTAAT	2 cut(s)	1035, 1047
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	1 cut(s)	252
ZrmI	AGTACT	2 cut(s)	523, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.