AT5G23000
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003513
Physical Location & Seq
Forward (+)
7696135 .. 7698022
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23000.1

Sequence Viewer

Length: 990 bp
ATGGGAAGAGCTCCGTGTTGCGACAAGACAAAAGTGAAGCGAGGGCCTTGGTCGCCTGAAGAAGACTCTAAACTTAGAGATTACATTGAAAAGTATGGTAATGGTGGAAATTGGATCTCTTTCCCCCTCAAAGCCGGTTTGAGGAGATGTGGGAAGAGTTGTAGACTGAGGTGGCTAAACTATTTGAGACCAAACATAAAGCATGGTGACTTCTCTGAGGAAGAAGACAGGATCATTTTTAGTCTCTTCGCTGCCATAGGAAGCAGGTGGTCAATAATAGCAGCTCATCTACCGGGACGAACAGACAACGACATAAAAAACTATTGGAACACAAAGCTAAGGAAGAAACTCTTGTCTTCTTCCTCTGATTCATCATCATCAGCCATGGCTTCTCCTTATCTAAACCCTATTTCTCAGGATGTGAAAAGACCAACCTCACCAACAACAATCCCATCTTCTTCTTACAATCCGTATGCTGAAAACCCTAATCAATACCCAACAAAATCCCTCATCTCCAGCATCAATGGCTTCGAAGCTGGTGACAAACAGATAATTTCCTATATTAACCCTAATTATCCTCAAGATCTCTATCTCTCGGACAGCAACAACAACACCTCGAACGCAAATGGTTTCTTGCTCAACCACAATATGTGTGATCAGTACAAGAACCACACCAGTTTTTCTTCAGACGTCAATGGGATAAGATCAGAGATTATGATGAAGCAAGAAGAGATAATGATGATGATGATGATAGACCACCACATTGACCAGAGGACAAAAGGGTACAATGGGGAATTCACACAAGGGTATTATAATTACTACAATGGGCATGGGGATTTGAAGCAAATGATTAGTGGAACAGGCACTAATTCTAACATAAACATGGGTGGTTCAGGTTCATCTTCTAGTTCGATAAGCAACCTAGCTGAGAACAAAAGCAGTGGTAGCCTCCTACTAGAATACAAATGCTTGCCCTATTTCTACTCCTAG

Protein Analysis

329

Amino Acids

37.04

Weight (kDa)

8.71

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 2.7e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 4.1e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 111 3.2e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 116 1.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 813
AarI CACCTGC 1 cut(s) 255
AatII GACGTC 1 cut(s) 693
Acc36I ACCTGC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 163
AclWI GGATC 2 cut(s) 122, 239
AcsI RAATTY 1 cut(s) 794
AcuI CTGAAG 2 cut(s) 78, 669
AcyI GRCGYC 1 cut(s) 690
AfaI GTAC 2 cut(s) 662, 785
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 2 cut(s) 89, 841
AluBI AGCT 5 cut(s) 11, 284, 337, 536, 926
AluI AGCT 5 cut(s) 11, 284, 337, 536, 926
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 181, 248
AlwI GGATC 2 cut(s) 122, 239
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 251, 281
ApoI RAATTY 1 cut(s) 794
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 3 cut(s) 218, 429, 551
AsuII TTCGAA 1 cut(s) 531
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 3 cut(s) 69, 231, 348
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 2 cut(s) 238, 293
BccI CCATC 1 cut(s) 460
BclI TGATCA 1 cut(s) 655
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 181, 248
BfaI CTAG 4 cut(s) 906, 923, 956, 988
BfuAI ACCTGC 1 cut(s) 255
BglII AGATCT 1 cut(s) 583
BisI GCNGC 2 cut(s) 252, 282
BlsI GCNGC 2 cut(s) 253, 283
Bme1390I CCNGG 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 528
BpiI GAAGAC 3 cut(s) 69, 231, 348
BpmI CTGGAG 1 cut(s) 499
Bpu10I CCTNAGC 1 cut(s) 338
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 564
BpuMI CCSGG 1 cut(s) 294
BsaBI GATNNNNATC 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 690
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 47, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 675
Bse8I GATNNNNATC 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 47, 384
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMII CTCAG 4 cut(s) 158, 207, 428, 918
BseNI ACTGG 1 cut(s) 675
BseRI GAGGAG 1 cut(s) 157
BseXI GCAGC 2 cut(s) 238, 293
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 135, 293
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 181, 248
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 181
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 5 cut(s) 114, 231, 583, 655, 704
Bsp19I CCATGG 1 cut(s) 384
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 4 cut(s) 159, 208, 427, 919
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 2 cut(s) 122, 239
BspT104I TTCGAA 1 cut(s) 531
BspTNI GGTCTC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 675
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 47, 384
BssMI GATC 5 cut(s) 114, 231, 583, 655, 704
BssNI GRCGYC 1 cut(s) 690
BssT1I CCWWGG 2 cut(s) 47, 384
Bst6I CTCTTC 3 cut(s) 149, 251, 723
BstACI GRCGYC 1 cut(s) 690
BstBI TTCGAA 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 971
BstDEI CTNAG 6 cut(s) 74, 167, 216, 338, 414, 927
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 5 cut(s) 117, 234, 586, 658, 707
BstMAI GTCTC 2 cut(s) 181, 248
BstMBI GATC 5 cut(s) 114, 231, 583, 655, 704
BstMWI GCNNNNNNNGC 3 cut(s) 52, 525, 945
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 238, 293
BstV2I GAAGAC 3 cut(s) 69, 231, 348
BstX2I RGATCY 2 cut(s) 114, 583
BstYI RGATCY 2 cut(s) 114, 583
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 424
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 1 cut(s) 946
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 971
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 661, 784
CspCI CAANNNNNGTGG 2 cut(s) 922, 957
CviAII CATG 4 cut(s) 203, 385, 830, 883
CviQI GTAC 2 cut(s) 661, 784
DdeI CTNAG 6 cut(s) 74, 167, 216, 338, 414, 927
DpnI GATC 5 cut(s) 116, 233, 585, 657, 706
DpnII GATC 5 cut(s) 114, 231, 583, 655, 704
Eam1104I CTCTTC 3 cut(s) 149, 251, 723
EarI CTCTTC 3 cut(s) 149, 251, 723
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 2 cut(s) 47, 384
Eco24I GRGCYC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 78, 669
EcoICRI GAGCTC 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 794
EcoT14I CCWWGG 2 cut(s) 47, 384
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 2 cut(s) 47, 384
FaeI CATG 4 cut(s) 206, 388, 833, 886
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 1 cut(s) 309
FatI CATG 4 cut(s) 202, 384, 829, 882
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 252, 282
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 2 cut(s) 252, 282
FspBI CTAG 4 cut(s) 906, 923, 956, 988
GluI GCNGC 2 cut(s) 252, 282
GsuI CTGGAG 1 cut(s) 499
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 135, 293
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 4 cut(s) 206, 388, 833, 886
HinfI GANTC 2 cut(s) 65, 368
HpaII CCGG 2 cut(s) 135, 293
HphI GGTGA 3 cut(s) 218, 429, 551
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 5 cut(s) 217, 367, 598, 688, 709
Hpy188III TCNNGA 2 cut(s) 416, 581
Hpy8I GTNNAC 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 690
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 525, 945
HpyF3I CTNAG 6 cut(s) 74, 167, 216, 338, 414, 927
HpySE526I ACGT 1 cut(s) 690
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 4 cut(s) 206, 388, 833, 886
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 5 cut(s) 114, 231, 583, 655, 704
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 2 cut(s) 238, 293
LweI GCATC 1 cut(s) 528
MaeI CTAG 4 cut(s) 906, 923, 956, 988
MaeII ACGT 1 cut(s) 690
MaeIII GTNAC 2 cut(s) 206, 539
MalI GATC 5 cut(s) 116, 233, 585, 657, 706
MboI GATC 5 cut(s) 114, 231, 583, 655, 704
MflI RGATCY 2 cut(s) 114, 583
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 6 cut(s) 109, 552, 571, 794, 814, 868
MlyI GAGTC 1 cut(s) 59
MseI TTAA 1 cut(s) 564
MslI CAYNNNNRTG 1 cut(s) 881
MspI CCGG 2 cut(s) 135, 293
MspR9I CCNGG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 52, 525, 945
NciI CCSGG 1 cut(s) 294
NcoI CCATGG 1 cut(s) 384
NdeII GATC 5 cut(s) 114, 231, 583, 655, 704
NlaIII CATG 4 cut(s) 206, 388, 833, 886
NmuCI GTSAC 2 cut(s) 206, 539
NspV TTCGAA 1 cut(s) 531
PaqCI CACCTGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 2 cut(s) 253, 283
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PsiI TTATAA 1 cut(s) 813
Psp124BI GAGCTC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 2 cut(s) 114, 583
RsaI GTAC 2 cut(s) 662, 785
RsaNI GTAC 2 cut(s) 661, 784
RseI CAYNNNNRTG 1 cut(s) 881
SacI GAGCTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 2 cut(s) 252, 282
Sau3AI GATC 5 cut(s) 114, 231, 583, 655, 704
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 528
SfuI TTCGAA 1 cut(s) 531
SmiMI CAYNNNNRTG 1 cut(s) 881
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 6 cut(s) 109, 552, 571, 794, 814, 868
SspMI CTAG 4 cut(s) 906, 923, 956, 988
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 292
StyI CCWWGG 2 cut(s) 47, 384
TaiI ACGT 1 cut(s) 693
TaqI TCGA 3 cut(s) 531, 617, 911
TasI AATT 6 cut(s) 109, 552, 571, 794, 814, 868
TatI WGTACW 1 cut(s) 660
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 2 cut(s) 206, 539
TseI GCWGC 2 cut(s) 251, 281
Tsp45I GTSAC 2 cut(s) 206, 539
TspDTI ATGAA 3 cut(s) 360, 734, 888
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 946
XapI RAATTY 1 cut(s) 794
XmiI GTMKAC 1 cut(s) 163
XspI CTAG 4 cut(s) 906, 923, 956, 988
ZraI GACGTC 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.