Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

33774271 .. 33776112

Gene Structure 1842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024272

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGTGAACCTAAAGGTCCAATATTTTATATGTTACAGTCTGAGAGGCACACTGAGCTGGCTTTGGATTCTTTGTGTTGTAGCAGACGGAAGAGACCAAGTCTAAGGAGATGTGGAAAAAGTTGCAGATTAAGATGGCTTAACTATCTCAGGCCCAACATTAAACATGGAGAATTTTCTGATGAAGAAGATAAGATCATCTGCAACCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATTATAGCAGCTCAATTGCCAGGAAGGACCGACAATGATATCAAGAACTACTGGAACACAAAGCTCAAGAAGAAACTCAACCAATATTCCATGATGGGCATAATTCCTCACCACTCCGCCACCTTCTCATCTCTTCTTCATCACCAAACTTCAACCTCATCATCTTCACCACCATCATACAGAAGCAGCAACAACACTAGTACTCCTACTTACTACACACATCAACCCAGGTCTTTTACCAGTACTGCTAATCTGGAATCCCATATTCCATTTTCACCAAGTCTTTTAAGTAGTACCAATACTACTACTAATGCTGCTCTTCAAGTGGGTCAAGAGAGTTATGTGAGTCAACCTTTGACGCAACATTATCAAGCCAAAGATAACATCTTCATGTTTGGGGGTACCACTACTGAAGCAAGCTGCAGTTCTTCTGATGGGAGCTATGGTACTGGTTATGGTGAGGTACAGTTGGGTCTGCAAAACTACTTCTACAATAATGGTGCTGAAGCAAACAACCAGAAAATCATGGTGTCAGATAATGGTCTTGGTCTTGATCATGACCAGGCTCCATTAGATTATGGCCTTGAAGAGATCAAGCAGTTAATTAGCAGTAGCACTACTACTAGTGGTGGTTGCAACAACTTTTTGTTTGATGAAAACAAGACAGAGGAAAAGGTCATGATGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

310

Amino Acids

34.61

Weight (kDa)

7.13

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	36 - 64	8.3e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	57 - 99	4.9e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	59 - 107	1.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	219
Acc65I	GGTACC	1 cut(s)	638
AccB1I	GGYRCC	1 cut(s)	638
AciI	CCGC	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	2 cut(s)	669, 762
AfaI	GTAC	7 cut(s)	439, 481, 532, 640, 685, 702, 923
AgsI	TTSAA	3 cut(s)	390, 560, 824
AhlI	ACTAGT	2 cut(s)	434, 860
AjnI	CCWGG	3 cut(s)	256, 464, 798
AluBI	AGCT	5 cut(s)	58, 248, 301, 657, 678
AluI	AGCT	5 cut(s)	58, 248, 301, 657, 678
Alw26I	GTCTC	1 cut(s)	88
AoxI	GGCC	2 cut(s)	152, 817
ApeKI	GCWGC	4 cut(s)	245, 423, 551, 657
ApoI	RAATTY	1 cut(s)	173
Asp718I	GGTACC	1 cut(s)	638
AspS9I	GGNCC	3 cut(s)	17, 153, 264
AsuHPI	GGTGA	6 cut(s)	17, 338, 371, 396, 504, 707
AsuNHI	GCTAGC	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	17, 264
BanI	GGYRCC	1 cut(s)	638
BbvI	GCAGC	4 cut(s)	257, 435, 538, 644
BccI	CCATC	4 cut(s)	129, 325, 418, 665
BciT130I	CCWGG	3 cut(s)	258, 466, 800
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	1 cut(s)	88
BcuI	ACTAGT	2 cut(s)	434, 860
BfaI	CTAG	3 cut(s)	216, 435, 861
BfmI	CTRYAG	1 cut(s)	658
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	4 cut(s)	246, 424, 552, 658
BlsI	GCNGC	4 cut(s)	247, 425, 553, 659
BmcAI	AGTACT	2 cut(s)	439, 481
Bme1390I	CCNGG	3 cut(s)	258, 466, 800
Bme18I	GGWCC	2 cut(s)	17, 264
BmgT120I	GGNCC	3 cut(s)	17, 153, 264
BmiI	GGNNCC	2 cut(s)	640, 804
BmrFI	CCNGG	3 cut(s)	258, 466, 800
BmtI	GCTAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	464
BsaXI	ACNNNNNCTCC	4 cut(s)	424, 454, 667, 697
Bse1I	ACTGG	3 cut(s)	293, 477, 691
BseBI	CCWGG	3 cut(s)	258, 466, 800
BseDI	CCNNGG	1 cut(s)	464
BseMII	CTCAG	3 cut(s)	33, 45, 163
BseNI	ACTGG	3 cut(s)	293, 477, 691
BseXI	GCAGC	4 cut(s)	257, 435, 538, 644
BshFI	GGCC	2 cut(s)	154, 819
BshNI	GGYRCC	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	88
BsnI	GGCC	2 cut(s)	154, 819
Bso31I	GGTCTC	1 cut(s)	88
Bsp143I	GATC	3 cut(s)	195, 790, 828
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	2 cut(s)	154, 819
BspCNI	CTCAG	3 cut(s)	34, 46, 162
BspHI	TCATGA	2 cut(s)	793, 915
BspLI	GGNNCC	2 cut(s)	640, 804
BspMAI	CTGCAG	1 cut(s)	662
BspMI	ACCTGC	1 cut(s)	219
BspOI	GCTAGC	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	638
BspTNI	GGTCTC	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	293, 477, 691
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	3 cut(s)	195, 790, 828
Bst2UI	CCWGG	3 cut(s)	258, 466, 800
Bst4CI	ACNGT	2 cut(s)	39, 705
Bst6I	CTCTTC	4 cut(s)	86, 375, 561, 819
BstC8I	GCNNGC	3 cut(s)	60, 217, 655
BstDEI	CTNAG	4 cut(s)	42, 54, 104, 149
BstKTI	GATC	3 cut(s)	198, 793, 831
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	3 cut(s)	195, 790, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 225
BstNI	CCWGG	3 cut(s)	258, 466, 800
BstSCI	CCNGG	3 cut(s)	256, 464, 798
BstSFI	CTRYAG	1 cut(s)	658
BstV1I	GCAGC	4 cut(s)	257, 435, 538, 644
BsuRI	GGCC	2 cut(s)	154, 819
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	60, 217, 655
CciI	TCATGA	2 cut(s)	793, 915
Cfr13I	GGNCC	3 cut(s)	17, 153, 264
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	7 cut(s)	438, 480, 531, 639, 684, 701, 922
CviAII	CATG	6 cut(s)	167, 328, 628, 763, 794, 916
CviQI	GTAC	7 cut(s)	438, 480, 531, 639, 684, 701, 922
DdeI	CTNAG	4 cut(s)	42, 54, 104, 149
DpnI	GATC	3 cut(s)	197, 792, 830
DpnII	GATC	3 cut(s)	195, 790, 828
Eam1104I	CTCTTC	4 cut(s)	86, 375, 561, 819
EarI	CTCTTC	4 cut(s)	86, 375, 561, 819
EciI	GGCGGA	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	17, 264
Eco57I	CTGAAG	2 cut(s)	669, 762
EcoRII	CCWGG	3 cut(s)	256, 464, 798
EcoRV	GATATC	1 cut(s)	277
FaeI	CATG	6 cut(s)	170, 331, 631, 766, 797, 919
FatI	CATG	6 cut(s)	166, 327, 627, 762, 793, 915
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	4 cut(s)	246, 424, 552, 658
Fsp4HI	GCNGC	4 cut(s)	246, 424, 552, 658
FspBI	CTAG	3 cut(s)	216, 435, 861
GluI	GCNGC	4 cut(s)	246, 424, 552, 658
HaeIII	GGCC	2 cut(s)	154, 819
HgaI	GACGC	1 cut(s)	604
Hin1II	CATG	6 cut(s)	170, 331, 631, 766, 797, 919
HincII	GTYRAC	1 cut(s)	587
HindII	GTYRAC	1 cut(s)	587
HinfI	GANTC	3 cut(s)	68, 494, 583
HphI	GGTGA	6 cut(s)	17, 338, 371, 396, 504, 707
Hpy166II	GTNNAC	2 cut(s)	8, 587
Hpy188I	TCNGA	4 cut(s)	43, 181, 670, 772
Hpy188III	TCNNGA	7 cut(s)	280, 304, 491, 569, 788, 794, 916
Hpy8I	GTNNAC	2 cut(s)	8, 587
HpyAV	CCTTC	2 cut(s)	255, 370
HpyCH4III	ACNGT	2 cut(s)	39, 705
HpyCH4V	TGCA	5 cut(s)	126, 204, 660, 715, 873
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 225
HpyF3I	CTNAG	4 cut(s)	42, 54, 104, 149
Hsp92II	CATG	6 cut(s)	170, 331, 631, 766, 797, 919
KpnI	GGTACC	1 cut(s)	642
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	195, 790, 828
LguI	GCTCTTC	1 cut(s)	561
LmnI	GCTCC	2 cut(s)	675, 808
Lsp1109I	GCAGC	4 cut(s)	257, 435, 538, 644
MaeI	CTAG	3 cut(s)	216, 435, 861
MaeIII	GTNAC	1 cut(s)	33
MalI	GATC	3 cut(s)	197, 792, 830
MboI	GATC	3 cut(s)	195, 790, 828
MfeI	CAATTG	1 cut(s)	251
MluCI	AATT	5 cut(s)	173, 237, 251, 339, 840
MlyI	GAGTC	1 cut(s)	592
MnlI	CCTC	6 cut(s)	39, 218, 354, 403, 691, 898
MseI	TTAA	5 cut(s)	131, 141, 162, 524, 839
MslI	CAYNNNNRTG	1 cut(s)	626
MspR9I	CCNGG	3 cut(s)	258, 466, 800
MunI	CAATTG	1 cut(s)	251
MvaI	CCWGG	3 cut(s)	258, 466, 800
MwoI	GCNNNNNNNGC	2 cut(s)	55, 225
NdeII	GATC	3 cut(s)	195, 790, 828
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	6 cut(s)	170, 331, 631, 766, 797, 919
NlaIV	GGNNCC	2 cut(s)	640, 804
PagI	TCATGA	2 cut(s)	793, 915
PaqCI	CACCTGC	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	68, 494
PflFI	GACNNNGTC	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	247, 425, 553, 659
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
Psp6I	CCWGG	3 cut(s)	256, 464, 798
PspGI	CCWGG	3 cut(s)	256, 464, 798
PspN4I	GGNNCC	2 cut(s)	640, 804
PspPI	GGNCC	3 cut(s)	17, 153, 264
PstI	CTGCAG	1 cut(s)	662
PsyI	GACNNNGTC	1 cut(s)	99
RsaI	GTAC	7 cut(s)	439, 481, 532, 640, 685, 702, 923
RsaNI	GTAC	7 cut(s)	438, 480, 531, 639, 684, 701, 922
RseI	CAYNNNNRTG	1 cut(s)	626
SapI	GCTCTTC	1 cut(s)	561
SaqAI	TTAA	5 cut(s)	131, 141, 162, 524, 839
SatI	GCNGC	4 cut(s)	246, 424, 552, 658
Sau3AI	GATC	3 cut(s)	195, 790, 828
Sau96I	GGNCC	3 cut(s)	17, 153, 264
ScaI	AGTACT	2 cut(s)	439, 481
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	3 cut(s)	258, 466, 800
SfcI	CTRYAG	1 cut(s)	658
SinI	GGWCC	2 cut(s)	17, 264
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SpeI	ACTAGT	2 cut(s)	434, 860
Sse9I	AATT	5 cut(s)	173, 237, 251, 339, 840
SsiI	CCGC	1 cut(s)	354
SspI	AATATT	2 cut(s)	24, 323
SspMI	CTAG	3 cut(s)	216, 435, 861
StyD4I	CCNGG	3 cut(s)	256, 464, 798
TaaI	ACNGT	2 cut(s)	39, 705
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	5 cut(s)	173, 237, 251, 339, 840
TatI	WGTACW	3 cut(s)	437, 479, 921
TfiI	GAWTC	2 cut(s)	68, 494
Tru1I	TTAA	5 cut(s)	131, 141, 162, 524, 839
Tru9I	TTAA	5 cut(s)	131, 141, 162, 524, 839
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	4 cut(s)	245, 423, 551, 657
TspDTI	ATGAA	4 cut(s)	198, 365, 616, 906
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	17, 264
XapI	RAATTY	1 cut(s)	173
XspI	CTAG	3 cut(s)	216, 435, 861
ZrmI	AGTACT	2 cut(s)	439, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.