Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

16457220 .. 16459261

Gene Structure 2042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1092400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGGAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAAGGACCATGGTCACCTGAAGAAGATGCAAAGCTGAAAGAGTACATAGAAAAATATGGGACTGGAGGGAATTGGATTGCTCTTCCACAGAAAGCTGGTCTTAGGAGATGTGGGAAGAGCTGCAGACTAAGATGGCTTAACTATCTGAGGCCCAACATTAAACATGGTGAATTTTCTGATGAAGAAGATAGAATTATCTGCAACCTCTTTACTAACATTGGAAGCAGGTGGTCAATAATAGCAGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAAAACTACTGGAACACCAAGCTAAAAAAGAAGCTCATGGGCATAAGCATTCTCCCATCCCAGCTGCTAAAATCTCACCCATCTCTTCTCCTTCAAACTTCATCCACATCCTCTTCGCCGTTATCATACCGAGGAAGCAACACCAGCACTACATTTTACACACAAACCAGGTCTTTCACCGGCACTTTGGAGCCCATTTCTTTTTCACAAAGTCTAATGAGCAGCAGTTCCATTAATTCTGCTCCTTCTGCTCTGCAAATCCCCCAAGAGAGCTTTGTGGGGAGACACATGCAGCAGCAGCATTATCAAGTCAAGGATAACATTTTGATGTTTGGAGGTGAAGCAAGTTGCAGCTCCTCTGATGGGAGTTGCAGCAACCATCAGATCACAGAAAGAGAGTATGAATATGGTGGTGCTTATGGCGGCCGCAACGGCGGTGCAACTAATGGGGAGGTGAAACTACAGATGGGTTTGCAAAATTATAATTTTTTTAATGGAGTTGGACGAGAGCAGAAAATTATGCAGAATAATTCCAGTGGAAATAGGATGTGGGAAGATCAAGCAGGATTGGACTATGGACTGGAAGAGATTAAGCAGTTAATTAGTAGTACAGGTAGTCACAACAACTTTTTGTTTGATGAAAACAAGACAGAGGAAAAGGTCATGATGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

331

Amino Acids

37.01

Weight (kDa)

8.7

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	2.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	3.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	2.3e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	3.7e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AciI	CCGC	3 cut(s)	738, 742, 750
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	83, 925, 986
AfiI	CCNNNNNNNGG	1 cut(s)	678
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	2 cut(s)	292, 482
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	592
AoxI	GGCC	2 cut(s)	188, 739
ApeKI	GCWGC	9 cut(s)	159, 281, 379, 537, 607, 610, 613, 666, 687
ApoI	RAATTY	1 cut(s)	209
AseI	ATTAAT	1 cut(s)	549
AspS9I	GGNCC	2 cut(s)	44, 189
AsuHPI	GGTGA	6 cut(s)	45, 218, 383, 484, 665, 781
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	13, 510
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	9 cut(s)	146, 293, 366, 549, 619, 622, 625, 678, 699
BccI	CCATC	6 cut(s)	165, 379, 403, 671, 702, 775
BceAI	ACGGC	2 cut(s)	418, 763
BciT130I	CCWGG	2 cut(s)	294, 484
BcoDI	GTCTC	1 cut(s)	592
BfmI	CTRYAG	2 cut(s)	160, 776
BfuAI	ACCTGC	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	747
Bme1390I	CCNGG	2 cut(s)	294, 484
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	44, 189
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	2 cut(s)	294, 484
BmsI	GCATC	1 cut(s)	55
BoxI	GACNNNNGTC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	47, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	678
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	4 cut(s)	106, 329, 849, 900
BseBI	CCWGG	2 cut(s)	294, 484
BseDI	CCNNGG	2 cut(s)	47, 445
BseGI	GGATG	4 cut(s)	371, 416, 422, 867
BseLI	CCNNNNNNNGG	1 cut(s)	678
BseMII	CTCAG	2 cut(s)	176, 299
BseNI	ACTGG	4 cut(s)	106, 329, 849, 900
BseRI	GAGGAG	1 cut(s)	661
BseX3I	CGGCCG	1 cut(s)	739
BseXI	GCAGC	9 cut(s)	146, 293, 366, 549, 619, 622, 625, 678, 699
BseYI	CCCAGC	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	742
BshFI	GGCC	2 cut(s)	190, 741
BsiEI	CGRYCG	1 cut(s)	742
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	678
BsmAI	GTCTC	1 cut(s)	592
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	190, 741
Bsp1286I	GDGCHC	2 cut(s)	13, 510
Bsp143I	GATC	2 cut(s)	699, 871
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	3 cut(s)	738, 742, 750
BspANI	GGCC	2 cut(s)	190, 741
BspCNI	CTCAG	2 cut(s)	177, 298
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	1 cut(s)	507
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	2 cut(s)	126, 149
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	4 cut(s)	106, 329, 849, 900
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	47, 445
BssMI	GATC	2 cut(s)	699, 871
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	294, 484
Bst6I	CTCTTC	5 cut(s)	126, 149, 405, 433, 894
BstDEI	CTNAG	4 cut(s)	140, 167, 185, 285
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	4 cut(s)	371, 416, 422, 867
BstKTI	GATC	2 cut(s)	702, 874
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	2 cut(s)	699, 871
BstMCI	CGRYCG	1 cut(s)	742
BstMWI	GCNNNNNNNGC	4 cut(s)	459, 563, 613, 747
BstNI	CCWGG	2 cut(s)	294, 484
BstNSI	RCATGY	1 cut(s)	607
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	292, 482
BstSFI	CTRYAG	2 cut(s)	160, 776
BstV1I	GCAGC	9 cut(s)	146, 293, 366, 549, 619, 622, 625, 678, 699
BstZI	CGGCCG	1 cut(s)	739
BsuRI	GGCC	2 cut(s)	190, 741
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	371, 416, 422, 867
BtsIMutI	CAGTG	1 cut(s)	856
BveI	ACCTGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	978
CciNI	GCGGCCGC	1 cut(s)	739
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	2 cut(s)	44, 189
CsiI	ACCWGGT	1 cut(s)	482
Csp6I	GTAC	3 cut(s)	82, 924, 985
CviAII	CATG	5 cut(s)	48, 203, 352, 604, 979
CviQI	GTAC	3 cut(s)	82, 924, 985
DdeI	CTNAG	4 cut(s)	140, 167, 185, 285
DpnI	GATC	2 cut(s)	701, 873
DpnII	GATC	2 cut(s)	699, 871
EaeI	YGGCCR	1 cut(s)	739
EagI	CGGCCG	1 cut(s)	739
Eam1104I	CTCTTC	5 cut(s)	126, 149, 405, 433, 894
EarI	CTCTTC	5 cut(s)	126, 149, 405, 433, 894
Ecl136II	GAGCTC	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	13, 510
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	739
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	292, 482
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	2 cut(s)	13, 510
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	5 cut(s)	51, 206, 355, 607, 982
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	5 cut(s)	47, 202, 351, 603, 978
FokI	GGATG	4 cut(s)	358, 403, 409, 874
FriOI	GRGCYC	2 cut(s)	13, 510
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	190, 741
HapII	CCGG	1 cut(s)	495
Hin1II	CATG	5 cut(s)	51, 206, 355, 607, 982
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	6 cut(s)	45, 218, 383, 484, 665, 781
Hpy188I	TCNGA	4 cut(s)	186, 217, 676, 699
Hpy188III	TCNNGA	1 cut(s)	979
HpyAV	CCTTC	2 cut(s)	416, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	459, 563, 613, 747
HpyF3I	CTNAG	4 cut(s)	140, 167, 185, 285
Hsp92II	CATG	5 cut(s)	51, 206, 355, 607, 982
Kzo9I	GATC	2 cut(s)	699, 871
LguI	GCTCTTC	2 cut(s)	126, 149
LmnI	GCTCC	4 cut(s)	16, 505, 562, 674
Lsp1109I	GCAGC	9 cut(s)	146, 293, 366, 549, 619, 622, 625, 678, 699
LweI	GCATC	1 cut(s)	55
MabI	ACCWGGT	1 cut(s)	482
MaeIII	GTNAC	3 cut(s)	20, 51, 932
MalI	GATC	2 cut(s)	701, 873
MboI	GATC	2 cut(s)	699, 871
MhlI	GDGCHC	2 cut(s)	13, 510
MluCI	AATT	9 cut(s)	109, 209, 231, 550, 793, 799, 831, 844, 915
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	9 cut(s)	98, 180, 254, 436, 440, 644, 682, 760, 961
MseI	TTAA	6 cut(s)	177, 198, 549, 807, 906, 914
MslI	CAYNNNNRTG	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	2 cut(s)	294, 484
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	2 cut(s)	294, 484
MwoI	GCNNNNNNNGC	4 cut(s)	459, 563, 613, 747
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	699, 871
NlaIII	CATG	5 cut(s)	51, 206, 355, 607, 982
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	3 cut(s)	20, 51, 932
NotI	GCGGCCGC	1 cut(s)	739
NspI	RCATGY	1 cut(s)	607
PagI	TCATGA	1 cut(s)	978
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	2 cut(s)	126, 149
PctI	GAATGC	1 cut(s)	363
PshAI	GACNNNNGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	292, 482
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	2 cut(s)	292, 482
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	2 cut(s)	44, 189
PstI	CTGCAG	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	3 cut(s)	83, 925, 986
RsaNI	GTAC	3 cut(s)	82, 924, 985
RseI	CAYNNNNRTG	1 cut(s)	641
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	2 cut(s)	126, 149
SaqAI	TTAA	6 cut(s)	177, 198, 549, 807, 906, 914
Sau3AI	GATC	2 cut(s)	699, 871
Sau96I	GGNCC	2 cut(s)	44, 189
ScrFI	CCNGG	2 cut(s)	294, 484
SduI	GDGCHC	2 cut(s)	13, 510
SexAI	ACCWGGT	1 cut(s)	482
SfaNI	GCATC	1 cut(s)	55
SfcI	CTRYAG	2 cut(s)	160, 776
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	641
Sse9I	AATT	9 cut(s)	109, 209, 231, 550, 793, 799, 831, 844, 915
SsiI	CCGC	3 cut(s)	738, 742, 750
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	292, 482
StyI	CCWWGG	1 cut(s)	47
TasI	AATT	9 cut(s)	109, 209, 231, 550, 793, 799, 831, 844, 915
TatI	WGTACW	3 cut(s)	81, 923, 984
TauI	GCSGC	2 cut(s)	741, 744
Tru1I	TTAA	6 cut(s)	177, 198, 549, 807, 906, 914
Tru9I	TTAA	6 cut(s)	177, 198, 549, 807, 906, 914
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	3 cut(s)	20, 51, 932
TseI	GCWGC	9 cut(s)	159, 281, 379, 537, 607, 610, 613, 666, 687
Tsp45I	GTSAC	3 cut(s)	20, 51, 932
TspDTI	ATGAA	4 cut(s)	234, 405, 732, 969
TspRI	CASTG	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.