MD11G1146200.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0003513
Physical Location & Seq
Reverse (-)
13745657 .. 13747413
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1146200.v1.1.491

Sequence Viewer

Length: 1068 bp
ATGGGGAGGGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAGGGACCATGGTCACCAGAAGAAGACTCAAAGCTAAAGGAGTACATAGAGAAATATGGGACTGGTGGGAATTGGATTGCTCTCCCACAGAAAGCTGGTAAGGGTCTGAAGAGATGTGGGAAAAGCTGCAGATTGAGATGGCTTAACTATCTGAGGCCAAACATCAAACATGGAGAATTCTCTGATGAGGAGGACAGAATAATATGCAGCCTCTATGCTAGCATTGGAAGCAGGTGGTCAGTTATAGCTGCACAGCTGTCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGGGGATGCATATGGCTTCTCCTCCAGCTCGTCACCACCATAGAAATTTACCAAAACCTCCCCCATTTCCTCCATTTCCTTCTTCTTCTCATCACAGTTACCAAAACCAATCATTGATTCAATCTGAACCTCTCTCATCACTGTACAAAGACCTAAGCAATTACGACAGATCTTTCTTAGGGTTTGAAGTGCCACTGCCACTGCCACTGCCACCACAAGTTTCACTGACATCCAGTAATTTCTCAAATACTTCCACCAACTCTGTTTCTCTTTTCCAAACCCTAAATTACCCAGCTGGAGTGAAGAAAAATAACAACAATAACCTCCTCATGTTTGGAAGTGAAGGAAGTTGCAGTACTTCATCTGCTGGAAGCTGTAATAACCAGATCAGCTATGACTACTGCAGCAGATCAGAGATTAATAACATCAAACAAGAAGAAATGGGTTTTGATCATCAGAGCTTCATGATGCTTAACTATGGCAACCAATGGACTGAGAGGCCAAATGGGTTTTATTTTGGAGCAGAAAACAACACATTAGAGTTTTCTGATCTGGATGAAGATGTTAAGCAGCAGCTGATTAGTTCTGGTAGTAAAAATACTAATAATCATGATACTATTATTAACGGTTCCTCTACGTCTAACTGCTTATTATTCAATGTTGATGAAAGCAAGACAGAAGATGATGAGGAGGTCATGTATTTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

356

Amino Acids

40.07

Weight (kDa)

6.75

Isoelectric Point (pI)

58.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 64 1.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 78 5.2e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 113 1.7e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 118 3.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 261
AcsI RAATTY 2 cut(s) 215, 403
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 3 cut(s) 83, 503, 715
AgsI TTSAA 3 cut(s) 479, 545, 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 459, 491
AlwNI CAGNNNCTG 1 cut(s) 934
AoxI GGCC 2 cut(s) 194, 857
ApeKI GCWGC 6 cut(s) 165, 246, 287, 762, 928, 931
ApoI RAATTY 2 cut(s) 215, 403
AseI ATTAAT 1 cut(s) 777
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 45, 383
AsuNHI GCTAGC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 13
BarI GAAGNNNNNNTAC 2 cut(s) 697, 729
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 6 cut(s) 152, 258, 274, 774, 940, 943
BccI CCATC 1 cut(s) 171
BclI TGATCA 1 cut(s) 808
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 2 cut(s) 166, 760
BfuAI ACCTGC 1 cut(s) 261
BglII AGATCT 1 cut(s) 527
BisI GCNGC 6 cut(s) 166, 247, 288, 763, 929, 932
BlsI GCNGC 6 cut(s) 167, 248, 289, 764, 930, 933
BmcAI AGTACT 1 cut(s) 715
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 12, 45, 988
BmsI GCATC 2 cut(s) 354, 816
BmtI GCTAGC 1 cut(s) 261
BoxI GACNNNNGTC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 2 cut(s) 366, 675
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 47
BsaXI ACNNNNNCTCC 1 cut(s) 1040
Bse1I ACTGG 2 cut(s) 106, 591
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 3 cut(s) 369, 587, 919
BseMII CTCAG 2 cut(s) 182, 843
BseNI ACTGG 2 cut(s) 106, 591
BseRI GAGGAG 4 cut(s) 242, 369, 674, 1061
BseXI GCAGC 6 cut(s) 152, 258, 274, 774, 940, 943
BseYI CCCAGC 1 cut(s) 649
BsgI GTGCAG 1 cut(s) 273
BshFI GGCC 2 cut(s) 196, 859
BslFI GGGAC 2 cut(s) 57, 112
BsmFI GGGAC 2 cut(s) 57, 112
BsnI GGCC 2 cut(s) 196, 859
Bsp1286I GDGCHC 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 5 cut(s) 527, 744, 767, 808, 907
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 2 cut(s) 196, 859
BspCNI CTCAG 2 cut(s) 183, 844
BspHI TCATGA 2 cut(s) 822, 967
BspLI GGNNCC 3 cut(s) 12, 45, 988
BspMAI CTGCAG 2 cut(s) 170, 764
BspMI ACCTGC 1 cut(s) 261
BspOI GCTAGC 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 2 cut(s) 106, 591
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 5 cut(s) 527, 744, 767, 808, 907
BssT1I CCWWGG 1 cut(s) 47
Bst4CI ACNGT 3 cut(s) 455, 501, 986
Bst6I CTCTTC 1 cut(s) 143
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 4 cut(s) 191, 512, 535, 852
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 3 cut(s) 369, 587, 919
BstKTI GATC 5 cut(s) 530, 747, 770, 811, 910
BstMBI GATC 5 cut(s) 527, 744, 767, 808, 907
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 51
BstSFI CTRYAG 2 cut(s) 166, 760
BstV1I GCAGC 6 cut(s) 152, 258, 274, 774, 940, 943
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 527
BstYI RGATCY 1 cut(s) 527
BsuRI GGCC 2 cut(s) 196, 859
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 369, 587, 919
BtsI GCAGTG 3 cut(s) 551, 557, 563
BtsIMutI CAGTG 5 cut(s) 497, 551, 557, 563, 581
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 259
CaiI CAGNNNCTG 1 cut(s) 934
CciI TCATGA 2 cut(s) 822, 967
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 3 cut(s) 82, 502, 714
CviAII CATG 7 cut(s) 48, 209, 358, 688, 823, 968, 1054
CviQI GTAC 3 cut(s) 82, 502, 714
DdeI CTNAG 4 cut(s) 191, 512, 535, 852
DpnI GATC 5 cut(s) 529, 746, 769, 810, 909
DpnII GATC 5 cut(s) 527, 744, 767, 808, 907
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 51
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 215
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 47
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 7 cut(s) 51, 212, 361, 691, 826, 971, 1057
FaqI GGGAC 2 cut(s) 57, 112
FatI CATG 7 cut(s) 47, 208, 357, 687, 822, 967, 1053
FauNDI CATATG 1 cut(s) 369
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 6 cut(s) 166, 247, 288, 763, 929, 932
FokI GGATG 3 cut(s) 376, 574, 926
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 6 cut(s) 166, 247, 288, 763, 929, 932
FspBI CTAG 1 cut(s) 258
GluI GCNGC 6 cut(s) 166, 247, 288, 763, 929, 932
GsaI CCCAGC 1 cut(s) 653
GsuI CTGGAG 2 cut(s) 366, 675
HaeIII GGCC 2 cut(s) 196, 859
Hin1II CATG 7 cut(s) 51, 212, 361, 691, 826, 971, 1057
HinfI GANTC 2 cut(s) 65, 475
HphI GGTGA 2 cut(s) 45, 383
Hpy188I TCNGA 7 cut(s) 147, 192, 223, 484, 772, 816, 907
Hpy188III TCNNGA 5 cut(s) 322, 346, 823, 911, 968
HpyAV CCTTC 3 cut(s) 34, 447, 695
HpyCH4III ACNGT 3 cut(s) 455, 501, 986
HpyCH4IV ACGT 2 cut(s) 33, 995
HpyCH4V TGCA 6 cut(s) 168, 246, 290, 367, 711, 762
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 4 cut(s) 191, 512, 535, 852
HpySE526I ACGT 2 cut(s) 33, 995
Hsp92II CATG 7 cut(s) 51, 212, 361, 691, 826, 971, 1057
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 527, 744, 767, 808, 907
LmnI GCTCC 2 cut(s) 16, 878
Lsp1109I GCAGC 6 cut(s) 152, 258, 274, 774, 940, 943
LweI GCATC 2 cut(s) 354, 816
MaeI CTAG 1 cut(s) 258
MaeII ACGT 2 cut(s) 33, 995
MaeIII GTNAC 4 cut(s) 20, 51, 389, 455
MalI GATC 5 cut(s) 529, 746, 769, 810, 909
MboI GATC 5 cut(s) 527, 744, 767, 808, 907
MflI RGATCY 1 cut(s) 527
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 6 cut(s) 109, 215, 403, 517, 595, 643
MlyI GAGTC 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 5 cut(s) 183, 777, 831, 924, 981
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 3 cut(s) 295, 653, 934
MwoI GCNNNNNNNGC 1 cut(s) 267
NcoI CCATGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 369
NdeII GATC 5 cut(s) 527, 744, 767, 808, 907
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 7 cut(s) 51, 212, 361, 691, 826, 971, 1057
NlaIV GGNNCC 3 cut(s) 12, 45, 988
NmuCI GTSAC 3 cut(s) 20, 51, 389
NsiI ATGCAT 1 cut(s) 369
PagI TCATGA 2 cut(s) 822, 967
PaqCI CACCTGC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 475
PkrI GCNGC 6 cut(s) 167, 248, 289, 764, 930, 933
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PshAI GACNNNNGTC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 777
PspEI GGTNACC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 12, 45, 988
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 2 cut(s) 170, 764
PstNI CAGNNNCTG 1 cut(s) 934
PsuI RGATCY 1 cut(s) 527
PvuII CAGCTG 3 cut(s) 295, 653, 934
RsaI GTAC 3 cut(s) 83, 503, 715
RsaNI GTAC 3 cut(s) 82, 502, 714
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 5 cut(s) 183, 777, 831, 924, 981
SatI GCNGC 6 cut(s) 166, 247, 288, 763, 929, 932
Sau3AI GATC 5 cut(s) 527, 744, 767, 808, 907
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 715
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 2 cut(s) 354, 816
SfcI CTRYAG 2 cut(s) 166, 760
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 6 cut(s) 109, 215, 403, 517, 595, 643
SspMI CTAG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 455, 501, 986
TaiI ACGT 2 cut(s) 36, 998
TasI AATT 6 cut(s) 109, 215, 403, 517, 595, 643
TatI WGTACW 3 cut(s) 81, 501, 713
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 5 cut(s) 183, 777, 831, 924, 981
Tru9I TTAA 5 cut(s) 183, 777, 831, 924, 981
TscAI CASTG 5 cut(s) 504, 558, 564, 570, 588
TseFI GTSAC 3 cut(s) 20, 51, 389
TseI GCWGC 6 cut(s) 165, 246, 287, 762, 928, 931
Tsp45I GTSAC 3 cut(s) 20, 51, 389
TspDTI ATGAA 4 cut(s) 708, 811, 930, 1038
TspRI CASTG 5 cut(s) 504, 558, 564, 570, 588
VpaK11BI GGWCC 1 cut(s) 44
VspI ATTAAT 1 cut(s) 777
XapI RAATTY 2 cut(s) 215, 403
XspI CTAG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 715
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.