Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Reverse (-)

7827814 .. 7829943

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGTAGGGCTCCTTGTTGTGACAAGGCAAATGTGAAGAAGGGGCCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGAGTACATAGAGAAGCAAGGGACGGGTGGGAATTGGATTGCTCTCCCACAGAAAGCTGGTCTGAAGAGATGTGGGAAAAGCTGCAGATTGAGGTGGCTTAACTACCTGAGGCCAAACATCAAACATGGAGAATTCTCTGATGAGGAAGACAGAATAATATGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGCTGCCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGGGGATGCATATGGCTCCTCCATCTCATCATCATCACCATCATCAGAGAAATTCATTAAAACCTCCCCCATTTCCTTCTTCCTCTCATCACAATTATCAAAACCAACCACTAATCCCATCTCAACCCCTCTCATCACTGTTCAAAGACCTTGGCAGTACTTATAATAGATCTTTCTCATCAGGCTTTGAAATTCCACATCTTTCCATGACATCCAATAATTTTTCAAACACTACCACCAACTCCTCTCTTTTCCCAACCCAAGAGTGCCTGGTGGGTTCCATGCAGTATAATAATTACCCTGTGAAGAAAAATAGTAATCAAAATAACCTCCTCATGTTTGGAAGTGAAGGAAGTTGCAGCACTTCATCTGATGGGAGCTGTAATCAGATCAGCTATGAGAGAGAGAGCAACATCAAACAAGAAGAAATGGTTTTCCAGAGTTTTGATCAAGATCCGAATAATCAGCGGTTCATGATGCTCAACTATGGTAACAACAATAGTGGTTGTAGTACTGGATCAGCAGGTCATGATCATCACCATGTGATCAACCAATGGTGTGAGAGGCCAGATGGGTTTGATCCTCTTGCAGCAGAAAACACATTAGGGTACTGTGATCTAGAAGATGTTAAACAGTTGATTAGTGGTGGGAATAATCTTAATAATTGTGTTAATGGGTCTAAGTCTAACAGCCTCTTTTCCAATGTTGATGAAAACAAGACAGAAGAGAAGGTTATGTATTTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

367

Amino Acids

41.29

Weight (kDa)

7.59

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	2 cut(s)	255, 866
AciI	CCGC	1 cut(s)	820
AclWI	GGATC	3 cut(s)	800, 877, 926
AcsI	RAATTY	3 cut(s)	209, 403, 543
AcuI	CTGAAG	2 cut(s)	95, 161
AdeI	CACNNNGTG	1 cut(s)	895
AfaI	GTAC	4 cut(s)	83, 511, 865, 962
AgsI	TTSAA	3 cut(s)	496, 542, 579
AjnI	CCWGG	2 cut(s)	292, 621
AluBI	AGCT	9 cut(s)	73, 134, 159, 281, 289, 337, 349, 732, 747
AluI	AGCT	9 cut(s)	73, 134, 159, 281, 289, 337, 349, 732, 747
AlwI	GGATC	3 cut(s)	800, 877, 926
AoxI	GGCC	3 cut(s)	44, 188, 917
ApeKI	GCWGC	6 cut(s)	159, 240, 281, 289, 711, 941
ApoI	RAATTY	3 cut(s)	209, 403, 543
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	45, 380, 881
AsuNHI	GCTAGC	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	69, 231
BbvI	GCAGC	6 cut(s)	146, 252, 268, 276, 723, 953
BccI	CCATC	5 cut(s)	382, 399, 478, 719, 917
BciT130I	CCWGG	2 cut(s)	294, 623
BclI	TGATCA	3 cut(s)	799, 883, 897
BfaI	CTAG	2 cut(s)	252, 971
BfmI	CTRYAG	1 cut(s)	160
BfuAI	ACCTGC	2 cut(s)	255, 866
BglII	AGATCT	1 cut(s)	521
BisI	GCNGC	6 cut(s)	160, 241, 282, 290, 712, 942
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	6 cut(s)	161, 242, 283, 291, 713, 943
BmcAI	AGTACT	2 cut(s)	511, 865
Bme1390I	CCNGG	2 cut(s)	294, 623
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	4 cut(s)	12, 45, 369, 631
BmrFI	CCNGG	2 cut(s)	294, 623
BmsI	GCATC	2 cut(s)	348, 819
BmtI	GCTAGC	1 cut(s)	255
BpiI	GAAGAC	2 cut(s)	69, 231
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	323
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	2 cut(s)	47, 502
Bse1I	ACTGG	1 cut(s)	871
Bse21I	CCTNAGG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	294, 623
BseDI	CCNNGG	2 cut(s)	47, 502
BseGI	GGATG	2 cut(s)	363, 563
BseJI	GATNNNNATC	1 cut(s)	804
BseMII	CTCAG	2 cut(s)	176, 299
BseNI	ACTGG	1 cut(s)	871
BseRI	GAGGAG	3 cut(s)	360, 586, 674
BseXI	GCAGC	6 cut(s)	146, 252, 268, 276, 723, 953
BshFI	GGCC	3 cut(s)	46, 190, 919
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	46, 190, 919
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	9 cut(s)	521, 741, 799, 805, 869, 883, 897, 931, 967
Bsp1720I	GCTNAGC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	820
BspANI	GGCC	3 cut(s)	46, 190, 919
BspCNI	CTCAG	2 cut(s)	177, 298
BspHI	TCATGA	2 cut(s)	825, 880
BspLI	GGNNCC	4 cut(s)	12, 45, 369, 631
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	2 cut(s)	255, 866
BspOI	GCTAGC	1 cut(s)	255
BspPI	GGATC	3 cut(s)	800, 877, 926
BsrI	ACTGG	1 cut(s)	871
BssECI	CCNNGG	2 cut(s)	47, 502
BssMI	GATC	9 cut(s)	521, 741, 799, 805, 869, 883, 897, 931, 967
BssT1I	CCWWGG	2 cut(s)	47, 502
Bst2UI	CCWGG	2 cut(s)	294, 623
Bst4CI	ACNGT	3 cut(s)	492, 965, 987
Bst6I	CTCTTC	2 cut(s)	137, 1071
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	185, 285, 1032
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	363, 563
BstKTI	GATC	9 cut(s)	524, 744, 802, 808, 872, 886, 900, 934, 970
BstMBI	GATC	9 cut(s)	521, 741, 799, 805, 869, 883, 897, 931, 967
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	2 cut(s)	294, 623
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	292, 621
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	6 cut(s)	146, 252, 268, 276, 723, 953
BstV2I	GAAGAC	2 cut(s)	69, 231
BstX2I	RGATCY	2 cut(s)	521, 805
BstYI	RGATCY	2 cut(s)	521, 805
Bsu36I	CCTNAGG	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	46, 190, 919
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	363, 563
BtsIMutI	CAGTG	1 cut(s)	488
BveI	ACCTGC	2 cut(s)	255, 866
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	2 cut(s)	825, 880
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	4 cut(s)	82, 510, 864, 961
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	9 cut(s)	48, 203, 352, 559, 634, 688, 826, 881, 893
CviQI	GTAC	4 cut(s)	82, 510, 864, 961
DdeI	CTNAG	3 cut(s)	185, 285, 1032
DpnI	GATC	9 cut(s)	523, 743, 801, 807, 871, 885, 899, 933, 969
DpnII	GATC	9 cut(s)	521, 741, 799, 805, 869, 883, 897, 931, 967
DraIII	CACNNNGTG	1 cut(s)	895
Eam1104I	CTCTTC	2 cut(s)	137, 1071
EarI	CTCTTC	2 cut(s)	137, 1071
Eco130I	CCWWGG	2 cut(s)	47, 502
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	95, 161
Eco81I	CCTNAGG	1 cut(s)	185
Eco91I	GGTNACC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	292, 621
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	47, 502
EcoT22I	ATGCAT	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 502
FaeI	CATG	9 cut(s)	51, 206, 355, 562, 637, 691, 829, 884, 896
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	9 cut(s)	47, 202, 351, 558, 633, 687, 825, 880, 892
FauNDI	CATATG	1 cut(s)	363
FbaI	TGATCA	3 cut(s)	799, 883, 897
Fnu4HI	GCNGC	6 cut(s)	160, 241, 282, 290, 712, 942
FokI	GGATG	2 cut(s)	370, 550
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	6 cut(s)	160, 241, 282, 290, 712, 942
FspBI	CTAG	2 cut(s)	252, 971
GluI	GCNGC	6 cut(s)	160, 241, 282, 290, 712, 942
HaeIII	GGCC	3 cut(s)	46, 190, 919
Hin1II	CATG	9 cut(s)	51, 206, 355, 562, 637, 691, 829, 884, 896
HinfI	GANTC	1 cut(s)	65
HphI	GGTGA	3 cut(s)	45, 380, 881
Hpy188I	TCNGA	6 cut(s)	141, 217, 399, 724, 741, 810
Hpy188III	TCNNGA	7 cut(s)	316, 340, 790, 803, 826, 881, 971
HpyAV	CCTTC	5 cut(s)	34, 70, 438, 695, 1075
HpyCH4III	ACNGT	3 cut(s)	492, 965, 987
HpyCH4V	TGCA	6 cut(s)	162, 240, 361, 637, 711, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	3 cut(s)	185, 285, 1032
Hsp92II	CATG	9 cut(s)	51, 206, 355, 562, 637, 691, 829, 884, 896
Ksp22I	TGATCA	3 cut(s)	799, 883, 897
Kzo9I	GATC	9 cut(s)	521, 741, 799, 805, 869, 883, 897, 931, 967
LmnI	GCTCC	3 cut(s)	16, 373, 729
Lsp1109I	GCAGC	6 cut(s)	146, 252, 268, 276, 723, 953
LweI	GCATC	2 cut(s)	348, 819
MaeI	CTAG	2 cut(s)	252, 971
MaeIII	GTNAC	3 cut(s)	20, 51, 842
MalI	GATC	9 cut(s)	523, 743, 801, 807, 871, 885, 899, 933, 969
MboI	GATC	9 cut(s)	521, 741, 799, 805, 869, 883, 897, 931, 967
MflI	RGATCY	2 cut(s)	521, 805
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	9 cut(s)	109, 209, 273, 403, 445, 543, 571, 646, 1015
MlyI	GAGTC	1 cut(s)	59
Mph1103I	ATGCAT	1 cut(s)	363
MseI	TTAA	5 cut(s)	177, 410, 981, 1011, 1023
MslI	CAYNNNNRTG	2 cut(s)	356, 891
MspA1I	CMGCKG	2 cut(s)	289, 820
MspR9I	CCNGG	2 cut(s)	294, 623
MvaI	CCWGG	2 cut(s)	294, 623
MwoI	GCNNNNNNNGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	9 cut(s)	521, 741, 799, 805, 869, 883, 897, 931, 967
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	9 cut(s)	51, 206, 355, 562, 637, 691, 829, 884, 896
NlaIV	GGNNCC	4 cut(s)	12, 45, 369, 631
NmuCI	GTSAC	2 cut(s)	20, 51
NsiI	ATGCAT	1 cut(s)	363
PagI	TCATGA	2 cut(s)	825, 880
PaqCI	CACCTGC	1 cut(s)	255
PkrI	GCNGC	6 cut(s)	161, 242, 283, 291, 713, 943
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	292, 621
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	2 cut(s)	292, 621
PspN4I	GGNNCC	4 cut(s)	12, 45, 369, 631
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	521, 805
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	4 cut(s)	83, 511, 865, 962
RsaNI	GTAC	4 cut(s)	82, 510, 864, 961
RseI	CAYNNNNRTG	2 cut(s)	356, 891
SaqAI	TTAA	5 cut(s)	177, 410, 981, 1011, 1023
SatI	GCNGC	6 cut(s)	160, 241, 282, 290, 712, 942
Sau3AI	GATC	9 cut(s)	521, 741, 799, 805, 869, 883, 897, 931, 967
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	2 cut(s)	511, 865
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	294, 623
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	348, 819
SfcI	CTRYAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	356, 891
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	9 cut(s)	109, 209, 273, 403, 445, 543, 571, 646, 1015
SsiI	CCGC	1 cut(s)	820
SspMI	CTAG	2 cut(s)	252, 971
StyD4I	CCNGG	2 cut(s)	292, 621
StyI	CCWWGG	2 cut(s)	47, 502
TaaI	ACNGT	3 cut(s)	492, 965, 987
TasI	AATT	9 cut(s)	109, 209, 273, 403, 445, 543, 571, 646, 1015
TatI	WGTACW	3 cut(s)	81, 509, 863
Tru1I	TTAA	5 cut(s)	177, 410, 981, 1011, 1023
Tru9I	TTAA	5 cut(s)	177, 410, 981, 1011, 1023
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	6 cut(s)	159, 240, 281, 289, 711, 941
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	4 cut(s)	396, 708, 814, 1077
TspRI	CASTG	1 cut(s)	495
XapI	RAATTY	3 cut(s)	209, 403, 543
XbaI	TCTAGA	1 cut(s)	970
XspI	CTAG	2 cut(s)	252, 971
ZrmI	AGTACT	2 cut(s)	511, 865
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.