SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36890 AT2G36890 AT5G23000 |
| fragaria_vesca | FvH4_3g30950 FvH4_6g16480 |
| malus_domestica | MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1 |
| prunus_persica | Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1 |
| pyrus_communis | pycom04g08690 pycom11g11920 pycom12g11110 |
| rosa_chinensis | RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501 |
| rosa_laevigata | RLG00000024272 RLG00000035160 |
| rosa_multiflora | Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019 |
| rosa_roxburghii | Rroxscaffold_1G00022930 Rroxscaffold_6G00410870 |
| rosa_rugosa | Rorug03G0108200.1 Rorug05G0307600 |
| rosa_samantha | Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300 |
| rosa_wichuraiana | Rw3G015040 Rw5G035520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 282, 1475 |
| Acc36I | ACCTGC | 2 cut(s) | 282, 1475 |
| AccB1I | GGYRCC | 1 cut(s) | 1277 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1192 |
| AccI | GTMKAC | 1 cut(s) | 1472 |
| AccII | CGCG | 1 cut(s) | 1159 |
| AciI | CCGC | 3 cut(s) | 90, 1159, 1319 |
| AclWI | GGATC | 4 cut(s) | 595, 1385, 1398, 1444 |
| AcsI | RAATTY | 2 cut(s) | 236, 1253 |
| AcuI | CTGAAG | 2 cut(s) | 386, 1483 |
| AdeI | CACNNNGTG | 1 cut(s) | 44 |
| AfaI | GTAC | 3 cut(s) | 550, 757, 977 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1192 |
| AgeI | ACCGGT | 1 cut(s) | 1379 |
| AgsI | TTSAA | 8 cut(s) | 169, 482, 608, 627, 659, 857, 1016, 1191 |
| AjnI | CCWGG | 2 cut(s) | 319, 803 |
| AleI | CACNNNNGTG | 1 cut(s) | 1431 |
| Alw21I | GWGCWC | 2 cut(s) | 1428, 1530 |
| Alw26I | GTCTC | 1 cut(s) | 638 |
| Alw44I | GTGCAC | 1 cut(s) | 1424 |
| AlwI | GGATC | 4 cut(s) | 595, 1385, 1398, 1444 |
| AoxI | GGCC | 2 cut(s) | 215, 965 |
| ApaLI | GTGCAC | 1 cut(s) | 1424 |
| ApeKI | GCWGC | 6 cut(s) | 186, 308, 316, 750, 908, 1027 |
| ApoI | RAATTY | 2 cut(s) | 236, 1253 |
| AseI | ATTAAT | 2 cut(s) | 1056, 1068 |
| AsiGI | ACCGGT | 1 cut(s) | 1379 |
| AspLEI | GCGC | 1 cut(s) | 1338 |
| AspS9I | GGNCC | 1 cut(s) | 327 |
| AsuC2I | CCSGG | 1 cut(s) | 585 |
| AsuHPI | GGTGA | 5 cut(s) | 464, 628, 689, 932, 971 |
| AsuII | TTCGAA | 1 cut(s) | 50 |
| AvaII | GGWCC | 1 cut(s) | 327 |
| BaeGI | GKGCMC | 1 cut(s) | 1428 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 967, 1000 |
| BamHI | GGATCC | 1 cut(s) | 1390 |
| BanI | GGYRCC | 1 cut(s) | 1277 |
| BanII | GRGCYC | 1 cut(s) | 1530 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 739, 771 |
| BauI | CACGAG | 1 cut(s) | 39 |
| BbsI | GAAGAC | 2 cut(s) | 59, 258 |
| Bbv12I | GWGCWC | 2 cut(s) | 1428, 1530 |
| BbvI | GCAGC | 6 cut(s) | 173, 303, 320, 737, 895, 1039 |
| BccI | CCATC | 5 cut(s) | 192, 761, 1294, 1365, 1474 |
| BciT130I | CCWGG | 2 cut(s) | 321, 805 |
| BclI | TGATCA | 2 cut(s) | 922, 1126 |
| BcnI | CCSGG | 1 cut(s) | 585 |
| BcoDI | GTCTC | 1 cut(s) | 638 |
| BfaI | CTAG | 4 cut(s) | 113, 279, 1362, 1531 |
| BfmI | CTRYAG | 2 cut(s) | 187, 751 |
| BfuAI | ACCTGC | 2 cut(s) | 282, 1475 |
| BglII | AGATCT | 1 cut(s) | 1207 |
| BisI | GCNGC | 8 cut(s) | 91, 187, 309, 317, 751, 909, 1028, 1160 |
| BlpI | GCTNAGC | 1 cut(s) | 312 |
| BlsI | GCNGC | 8 cut(s) | 92, 188, 310, 318, 752, 910, 1029, 1161 |
| BmcAI | AGTACT | 2 cut(s) | 550, 757 |
| Bme1390I | CCNGG | 3 cut(s) | 321, 585, 805 |
| Bme18I | GGWCC | 1 cut(s) | 327 |
| BmgT120I | GGNCC | 1 cut(s) | 327 |
| BmiI | GGNNCC | 4 cut(s) | 402, 682, 1279, 1392 |
| BmrFI | CCNGG | 3 cut(s) | 321, 585, 805 |
| BmsI | GCATC | 1 cut(s) | 870 |
| BpiI | GAAGAC | 2 cut(s) | 59, 258 |
| Bpu10I | CCTNAGC | 1 cut(s) | 377 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 312 |
| Bpu14I | TTCGAA | 1 cut(s) | 50 |
| BpuEI | CTTGAG | 2 cut(s) | 648, 1165 |
| BpuMI | CCSGG | 1 cut(s) | 585 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1008 |
| BsaJI | CCNNGG | 1 cut(s) | 1448 |
| BsaWI | WCCGGW | 2 cut(s) | 1379, 1393 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 632, 662 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1192 |
| Bse118I | RCCGGY | 1 cut(s) | 1379 |
| Bse1I | ACTGG | 2 cut(s) | 356, 1409 |
| Bse3DI | GCAATG | 1 cut(s) | 77 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1008 |
| BseBI | CCWGG | 2 cut(s) | 321, 805 |
| BseDI | CCNNGG | 1 cut(s) | 1448 |
| BseGI | GGATG | 2 cut(s) | 1305, 1376 |
| BseJI | GATNNNNATC | 1 cut(s) | 1008 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1192 |
| BseMI | GCAATG | 1 cut(s) | 77 |
| BseMII | CTCAG | 5 cut(s) | 203, 234, 326, 391, 437 |
| BseNI | ACTGG | 2 cut(s) | 356, 1409 |
| BseRI | GAGGAG | 4 cut(s) | 260, 393, 637, 1434 |
| BseSI | GKGCMC | 1 cut(s) | 1428 |
| BseXI | GCAGC | 6 cut(s) | 173, 303, 320, 737, 895, 1039 |
| BseYI | CCCAGC | 2 cut(s) | 103, 700 |
| Bsh1236I | CGCG | 1 cut(s) | 1159 |
| BshFI | GGCC | 2 cut(s) | 217, 967 |
| BshNI | GGYRCC | 1 cut(s) | 1277 |
| BshTI | ACCGGT | 1 cut(s) | 1379 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1428, 1530 |
| BsiSI | CCGG | 3 cut(s) | 584, 1380, 1394 |
| BslFI | GGGAC | 1 cut(s) | 1415 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1192 |
| BsmAI | GTCTC | 1 cut(s) | 638 |
| BsmBI | CGTCTC | 1 cut(s) | 638 |
| BsmFI | GGGAC | 1 cut(s) | 1415 |
| BsnI | GGCC | 2 cut(s) | 217, 967 |
| Bsp119I | TTCGAA | 1 cut(s) | 50 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1428, 1530 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 312 |
| BspACI | CCGC | 3 cut(s) | 90, 1159, 1319 |
| BspANI | GGCC | 2 cut(s) | 217, 967 |
| BspCNI | CTCAG | 5 cut(s) | 204, 235, 325, 390, 436 |
| BspFNI | CGCG | 1 cut(s) | 1159 |
| BspHI | TCATGA | 1 cut(s) | 876 |
| BspLI | GGNNCC | 4 cut(s) | 402, 682, 1279, 1392 |
| BspMAI | CTGCAG | 2 cut(s) | 191, 755 |
| BspMI | ACCTGC | 2 cut(s) | 282, 1475 |
| BspPI | GGATC | 4 cut(s) | 595, 1385, 1398, 1444 |
| BspT104I | TTCGAA | 1 cut(s) | 50 |
| BspT107I | GGYRCC | 1 cut(s) | 1277 |
| BsrDI | GCAATG | 1 cut(s) | 77 |
| BsrFI | RCCGGY | 1 cut(s) | 1379 |
| BsrI | ACTGG | 2 cut(s) | 356, 1409 |
| BssAI | RCCGGY | 1 cut(s) | 1379 |
| BssECI | CCNNGG | 1 cut(s) | 1448 |
| BssNAI | GTATAC | 1 cut(s) | 1473 |
| BssSI | CACGAG | 1 cut(s) | 39 |
| BssT1I | CCWWGG | 1 cut(s) | 1448 |
| Bst1107I | GTATAC | 1 cut(s) | 1473 |
| Bst2BI | CACGAG | 1 cut(s) | 39 |
| Bst2UI | CCWGG | 2 cut(s) | 321, 805 |
| Bst4CI | ACNGT | 3 cut(s) | 548, 899, 1519 |
| Bst6I | CTCTTC | 2 cut(s) | 164, 474 |
| BstBI | TTCGAA | 1 cut(s) | 50 |
| BstDEI | CTNAG | 6 cut(s) | 212, 243, 312, 377, 423, 1241 |
| BstF5I | GGATG | 2 cut(s) | 1305, 1376 |
| BstFNI | CGCG | 1 cut(s) | 1159 |
| BstHHI | GCGC | 1 cut(s) | 1338 |
| BstMAI | GTCTC | 1 cut(s) | 638 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 67, 288, 1352 |
| BstNI | CCWGG | 2 cut(s) | 321, 805 |
| BstSCI | CCNGG | 3 cut(s) | 319, 583, 803 |
| BstSFI | CTRYAG | 2 cut(s) | 187, 751 |
| BstSLI | GKGCMC | 1 cut(s) | 1428 |
| BstUI | CGCG | 1 cut(s) | 1159 |
| BstV1I | GCAGC | 6 cut(s) | 173, 303, 320, 737, 895, 1039 |
| BstV2I | GAAGAC | 2 cut(s) | 59, 258 |
| BstX2I | RGATCY | 4 cut(s) | 587, 1207, 1390, 1436 |
| BstYI | RGATCY | 4 cut(s) | 587, 1207, 1390, 1436 |
| BstZ17I | GTATAC | 1 cut(s) | 1473 |
| BsuRI | GGCC | 2 cut(s) | 217, 967 |
| BtgZI | GCGATG | 1 cut(s) | 42 |
| BtsCI | GGATG | 2 cut(s) | 1305, 1376 |
| BtsIMutI | CAGTG | 3 cut(s) | 1047, 1111, 1507 |
| BveI | ACCTGC | 2 cut(s) | 282, 1475 |
| CciI | TCATGA | 1 cut(s) | 876 |
| CfoI | GCGC | 1 cut(s) | 1338 |
| Cfr10I | RCCGGY | 1 cut(s) | 1379 |
| Cfr13I | GGNCC | 1 cut(s) | 327 |
| Csp6I | GTAC | 3 cut(s) | 549, 756, 976 |
| CspAI | ACCGGT | 1 cut(s) | 1379 |
| CviAII | CATG | 7 cut(s) | 230, 517, 535, 685, 730, 877, 1201 |
| CviQI | GTAC | 3 cut(s) | 549, 756, 976 |
| DdeI | CTNAG | 6 cut(s) | 212, 243, 312, 377, 423, 1241 |
| DraIII | CACNNNGTG | 1 cut(s) | 44 |
| Eam1104I | CTCTTC | 2 cut(s) | 164, 474 |
| EarI | CTCTTC | 2 cut(s) | 164, 474 |
| Ecl136II | GAGCTC | 1 cut(s) | 1528 |
| Eco130I | CCWWGG | 1 cut(s) | 1448 |
| Eco24I | GRGCYC | 1 cut(s) | 1530 |
| Eco32I | GATATC | 1 cut(s) | 340 |
| Eco47I | GGWCC | 1 cut(s) | 327 |
| Eco53kI | GAGCTC | 1 cut(s) | 1528 |
| Eco57I | CTGAAG | 2 cut(s) | 386, 1483 |
| EcoICRI | GAGCTC | 1 cut(s) | 1528 |
| EcoRII | CCWGG | 2 cut(s) | 319, 803 |
| EcoRV | GATATC | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 1 cut(s) | 1448 |
| EcoT38I | GRGCYC | 1 cut(s) | 1530 |
| ErhI | CCWWGG | 1 cut(s) | 1448 |
| Esp3I | CGTCTC | 1 cut(s) | 638 |
| FaeI | CATG | 7 cut(s) | 233, 520, 538, 688, 733, 880, 1204 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 657, 689 |
| FaqI | GGGAC | 1 cut(s) | 1415 |
| FatI | CATG | 7 cut(s) | 229, 516, 534, 684, 729, 876, 1200 |
| FauI | CCCGC | 1 cut(s) | 1312 |
| FauNDI | CATATG | 1 cut(s) | 396 |
| FbaI | TGATCA | 2 cut(s) | 922, 1126 |
| FblI | GTMKAC | 1 cut(s) | 1472 |
| Fnu4HI | GCNGC | 8 cut(s) | 91, 187, 309, 317, 751, 909, 1028, 1160 |
| FokI | GGATG | 2 cut(s) | 1312, 1383 |
| FriOI | GRGCYC | 1 cut(s) | 1530 |
| Fsp4HI | GCNGC | 8 cut(s) | 91, 187, 309, 317, 751, 909, 1028, 1160 |
| FspBI | CTAG | 4 cut(s) | 113, 279, 1362, 1531 |
| GlaI | GCGC | 1 cut(s) | 1337 |
| GluI | GCNGC | 8 cut(s) | 91, 187, 309, 317, 751, 909, 1028, 1160 |
| GsaI | CCCAGC | 2 cut(s) | 107, 704 |
| HaeIII | GGCC | 2 cut(s) | 217, 967 |
| HapII | CCGG | 3 cut(s) | 584, 1380, 1394 |
| HhaI | GCGC | 1 cut(s) | 1338 |
| Hin1II | CATG | 7 cut(s) | 233, 520, 538, 688, 733, 880, 1204 |
| Hin6I | GCGC | 1 cut(s) | 1336 |
| HinP1I | GCGC | 1 cut(s) | 1336 |
| HinfI | GANTC | 5 cut(s) | 391, 427, 458, 800, 1293 |
| HpaII | CCGG | 3 cut(s) | 584, 1380, 1394 |
| HphI | GGTGA | 5 cut(s) | 464, 628, 689, 932, 971 |
| Hpy166II | GTNNAC | 3 cut(s) | 1377, 1426, 1473 |
| Hpy188I | TCNGA | 8 cut(s) | 7, 213, 244, 426, 766, 789, 864, 1001 |
| Hpy188III | TCNNGA | 8 cut(s) | 39, 343, 455, 665, 813, 877, 1013, 1297 |
| Hpy8I | GTNNAC | 3 cut(s) | 1377, 1426, 1473 |
| Hpy99I | CGWCG | 1 cut(s) | 1480 |
| HpyAV | CCTTC | 6 cut(s) | 318, 417, 737, 1132, 1381, 1424 |
| HpyCH4III | ACNGT | 3 cut(s) | 548, 899, 1519 |
| HpyCH4V | TGCA | 8 cut(s) | 189, 267, 388, 520, 688, 753, 911, 1426 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 67, 288, 1352 |
| HpyF3I | CTNAG | 6 cut(s) | 212, 243, 312, 377, 423, 1241 |
| Hsp92II | CATG | 7 cut(s) | 233, 520, 538, 688, 733, 880, 1204 |
| HspAI | GCGC | 1 cut(s) | 1336 |
| Ksp22I | TGATCA | 2 cut(s) | 922, 1126 |
| LmnI | GCTCC | 4 cut(s) | 406, 771, 1447, 1525 |
| Lsp1109I | GCAGC | 6 cut(s) | 173, 303, 320, 737, 895, 1039 |
| LweI | GCATC | 1 cut(s) | 870 |
| MaeI | CTAG | 4 cut(s) | 113, 279, 1362, 1531 |
| MaeIII | GTNAC | 3 cut(s) | 108, 428, 776 |
| MflI | RGATCY | 4 cut(s) | 587, 1207, 1390, 1436 |
| MhlI | GDGCHC | 2 cut(s) | 1428, 1530 |
| MluCI | AATT | 4 cut(s) | 236, 261, 476, 1253 |
| MlyI | GAGTC | 3 cut(s) | 385, 436, 809 |
| MmeI | TCCRAC | 1 cut(s) | 1270 |
| MseI | TTAA | 9 cut(s) | 204, 413, 531, 566, 885, 1023, 1056, 1068, 1458 |
| MslI | CAYNNNNRTG | 2 cut(s) | 957, 1431 |
| MspA1I | CMGCKG | 3 cut(s) | 316, 704, 1030 |
| MspI | CCGG | 3 cut(s) | 584, 1380, 1394 |
| MspR9I | CCNGG | 3 cut(s) | 321, 585, 805 |
| MvaI | CCWGG | 2 cut(s) | 321, 805 |
| MvnI | CGCG | 1 cut(s) | 1159 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 67, 288, 1352 |
| NciI | CCSGG | 1 cut(s) | 585 |
| NdeI | CATATG | 1 cut(s) | 396 |
| NlaIII | CATG | 7 cut(s) | 233, 520, 538, 688, 733, 880, 1204 |
| NlaIV | GGNNCC | 4 cut(s) | 402, 682, 1279, 1392 |
| NmeAIII | GCCGAG | 1 cut(s) | 1306 |
| NmuCI | GTSAC | 1 cut(s) | 428 |
| NspV | TTCGAA | 1 cut(s) | 50 |
| OliI | CACNNNNGTG | 1 cut(s) | 1431 |
| PagI | TCATGA | 1 cut(s) | 876 |
| PaqCI | CACCTGC | 2 cut(s) | 282, 1475 |
| PfeI | GAWTC | 2 cut(s) | 458, 1293 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1192 |
| PfoI | TCCNGGA | 1 cut(s) | 583 |
| PinAI | ACCGGT | 1 cut(s) | 1379 |
| PkrI | GCNGC | 8 cut(s) | 92, 188, 310, 318, 752, 910, 1029, 1161 |
| PleI | GAGTC | 3 cut(s) | 385, 435, 808 |
| PpsI | GAGTC | 3 cut(s) | 385, 435, 808 |
| PshBI | ATTAAT | 2 cut(s) | 1056, 1068 |
| Psp124BI | GAGCTC | 1 cut(s) | 1530 |
| Psp6I | CCWGG | 2 cut(s) | 319, 803 |
| PspFI | CCCAGC | 2 cut(s) | 103, 700 |
| PspGI | CCWGG | 2 cut(s) | 319, 803 |
| PspN4I | GGNNCC | 4 cut(s) | 402, 682, 1279, 1392 |
| PspPI | GGNCC | 1 cut(s) | 327 |
| PstI | CTGCAG | 2 cut(s) | 191, 755 |
| PsuI | RGATCY | 4 cut(s) | 587, 1207, 1390, 1436 |
| PvuII | CAGCTG | 3 cut(s) | 316, 704, 1030 |
| RsaI | GTAC | 3 cut(s) | 550, 757, 977 |
| RsaNI | GTAC | 3 cut(s) | 549, 756, 976 |
| RseI | CAYNNNNRTG | 2 cut(s) | 957, 1431 |
| SacI | GAGCTC | 1 cut(s) | 1530 |
| SaqAI | TTAA | 9 cut(s) | 204, 413, 531, 566, 885, 1023, 1056, 1068, 1458 |
| SatI | GCNGC | 8 cut(s) | 91, 187, 309, 317, 751, 909, 1028, 1160 |
| Sau96I | GGNCC | 1 cut(s) | 327 |
| ScaI | AGTACT | 2 cut(s) | 550, 757 |
| SchI | GAGTC | 3 cut(s) | 385, 436, 809 |
| ScrFI | CCNGG | 3 cut(s) | 321, 585, 805 |
| SduI | GDGCHC | 2 cut(s) | 1428, 1530 |
| SfaNI | GCATC | 1 cut(s) | 870 |
| SfcI | CTRYAG | 2 cut(s) | 187, 751 |
| SfuI | TTCGAA | 1 cut(s) | 50 |
| SinI | GGWCC | 1 cut(s) | 327 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 957, 1431 |
| SmlI | CTYRAG | 2 cut(s) | 663, 1144 |
| SmoI | CTYRAG | 2 cut(s) | 663, 1144 |
| Sse9I | AATT | 4 cut(s) | 236, 261, 476, 1253 |
| SsiI | CCGC | 3 cut(s) | 90, 1159, 1319 |
| SspI | AATATT | 1 cut(s) | 1066 |
| SspMI | CTAG | 4 cut(s) | 113, 279, 1362, 1531 |
| SstI | GAGCTC | 1 cut(s) | 1530 |
| StyD4I | CCNGG | 3 cut(s) | 319, 583, 803 |
| StyI | CCWWGG | 1 cut(s) | 1448 |
| TaaI | ACNGT | 3 cut(s) | 548, 899, 1519 |
| TaqI | TCGA | 2 cut(s) | 50, 299 |
| TaqII | GACCGA | 1 cut(s) | 344 |
| TasI | AATT | 4 cut(s) | 236, 261, 476, 1253 |
| TatI | WGTACW | 2 cut(s) | 548, 755 |
| TauI | GCSGC | 2 cut(s) | 93, 1162 |
| TfiI | GAWTC | 2 cut(s) | 458, 1293 |
| Tru1I | TTAA | 9 cut(s) | 204, 413, 531, 566, 885, 1023, 1056, 1068, 1458 |
| Tru9I | TTAA | 9 cut(s) | 204, 413, 531, 566, 885, 1023, 1056, 1068, 1458 |
| TscAI | CASTG | 3 cut(s) | 1054, 1111, 1507 |
| TseFI | GTSAC | 1 cut(s) | 428 |
| TseI | GCWGC | 6 cut(s) | 186, 308, 316, 750, 908, 1027 |
| Tsp45I | GTSAC | 1 cut(s) | 428 |
| TspDTI | ATGAA | 6 cut(s) | 399, 485, 750, 865, 1128, 1189 |
| TspRI | CASTG | 3 cut(s) | 1054, 1111, 1507 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1192 |
| VneI | GTGCAC | 1 cut(s) | 1424 |
| VpaK11BI | GGWCC | 1 cut(s) | 327 |
| VspI | ATTAAT | 2 cut(s) | 1056, 1068 |
| XapI | RAATTY | 2 cut(s) | 236, 1253 |
| XmiI | GTMKAC | 1 cut(s) | 1472 |
| XspI | CTAG | 4 cut(s) | 113, 279, 1362, 1531 |
| ZrmI | AGTACT | 2 cut(s) | 550, 757 |