RLG00000035160
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
61964713 .. 61969568
4856 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035160

Sequence Viewer

Length: 1533 bp
ATGTCGGAGATAGGAGAGAAAAAAGAGAGAGAGATTTCACGAGGTGGTTCGAAGACATCGCCAAACACGCAATGTAATGTTATTGGAGGCGGCAAGTCTGGGCTGGGGTTACTAGAGATATGTTGTGGAGGTGGAGGTAGAGGTGGTGGTGGGTGGTGTGGAGGTTTGAAGAGATGTGGAAAAAGCTGCAGATTGAGATGGCTTAACTATCTGAGGCCAAACATCAAACATGGAGAATTTTCTGAGGAGGAAGACAGAATAATTTGCACCCTCTTTACTAGCATTGGAAGCAGGTGGTCGATTATAGCAGCTCAGCTGCCAGGAAGGACCGACAATGATATCAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCAGGGATATGCAGACTCATATGGCTCCTCCTTCATTAACAGCTTCTCAGAGTCACAGATCAAAGCCTCCCCCATTTCCTGATTCTTCCTCTCTTCACCAATTTCAAAACCAACCATTTCATCATCAACCTCTCTCACTCATGCACAAAGACCTTAACATGATGACTTACAGTACTTACACCCCAACCTTAACAAGCCCTGCTACTCCGGGATCTTTCTCATCAGGCTTTGAAATAATGCCAAACATTTCAACCCGTCTCACCGACTACTCCTCCCTTTTTCAAACTCAAGAGTGCCTTGTGGGTTCCATGCACTACAATCACCCAGCTGTGAAGAAAAATCTAAACCTCATCATGTTTGGAAGTGAAGGAAGCTGCAGTACTTCATCTGATGGGAGCTGTAACAACAATCAGATCAGCTATGAGTCCAGGCGATCAGGAAATGTCAAACAAGAGGAAATGGGTATGGGTTTTCAGCTTGAAGATCAGAACCAGAAGTTCATGATGCTTAACTATGGAAACAGTAGTAGTGCTGCAATATCAGGTGATCATCATAACTATATCAACAACAACAACCATTGGGGTGAGAGGCCAAATGGGTACAATGGTAATAATACCCGTTTCGGAGATTATGATCTTGAAGATGTTAAGCAGCTGATTAGTAGTAGTAGCACTGATATTAATGTCAATATTAATAATGATAATGGGTCTATATCTAACAGCTTGTTCAGTGTTGATGAAAACAAGACTGATCATAAAGAGAAGGGCTTGAGTGCTTCCTCGCGGCTGGTGGTTTCTCAAAACTTTCTCCATTCAATGGTGTTCATGGCAGATCTTTGTCTGCTTATTCTTTTCCTCGTTTGTCTAAGTGGGGATAAATTTGTGTCGGTTTTGTTTGCTGGTGCCGAGTGTGTTGGATTCGGGATGGTGGTAGTTCGTGTTGCGGGGTTGGGTTTAGGGCGCAAGGTAGCAGACTTGGCTTCTACTAGATTGGGATGGTTTACCGGTGTGAAGGATCCGGTCTGGGACTGGTATGTTGAGGTGTTTGTGCACGAAGGTGGATCTGCTCCTCCTTGGTGTCTTAATGAGTTGGTGTATACGACGATGGCAGGTGGTGTTGGCTTCAGTGCTAACATACTGACGGTGGAGGAGCTCTAG

Protein Analysis

511

Amino Acids

56.08

Weight (kDa)

6.73

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 78 - 120 1e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 80 - 127 1.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 282, 1475
Acc36I ACCTGC 2 cut(s) 282, 1475
AccB1I GGYRCC 1 cut(s) 1277
AccB7I CCANNNNNTGG 1 cut(s) 1192
AccI GTMKAC 1 cut(s) 1472
AccII CGCG 1 cut(s) 1159
AciI CCGC 3 cut(s) 90, 1159, 1319
AclWI GGATC 4 cut(s) 595, 1385, 1398, 1444
AcsI RAATTY 2 cut(s) 236, 1253
AcuI CTGAAG 2 cut(s) 386, 1483
AdeI CACNNNGTG 1 cut(s) 44
AfaI GTAC 3 cut(s) 550, 757, 977
AfiI CCNNNNNNNGG 1 cut(s) 1192
AgeI ACCGGT 1 cut(s) 1379
AgsI TTSAA 8 cut(s) 169, 482, 608, 627, 659, 857, 1016, 1191
AjnI CCWGG 2 cut(s) 319, 803
AleI CACNNNNGTG 1 cut(s) 1431
Alw21I GWGCWC 2 cut(s) 1428, 1530
Alw26I GTCTC 1 cut(s) 638
Alw44I GTGCAC 1 cut(s) 1424
AlwI GGATC 4 cut(s) 595, 1385, 1398, 1444
AoxI GGCC 2 cut(s) 215, 965
ApaLI GTGCAC 1 cut(s) 1424
ApeKI GCWGC 6 cut(s) 186, 308, 316, 750, 908, 1027
ApoI RAATTY 2 cut(s) 236, 1253
AseI ATTAAT 2 cut(s) 1056, 1068
AsiGI ACCGGT 1 cut(s) 1379
AspLEI GCGC 1 cut(s) 1338
AspS9I GGNCC 1 cut(s) 327
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 5 cut(s) 464, 628, 689, 932, 971
AsuII TTCGAA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 1428
BaeI ACNNNNGTAYC 2 cut(s) 967, 1000
BamHI GGATCC 1 cut(s) 1390
BanI GGYRCC 1 cut(s) 1277
BanII GRGCYC 1 cut(s) 1530
BarI GAAGNNNNNNTAC 2 cut(s) 739, 771
BauI CACGAG 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 59, 258
Bbv12I GWGCWC 2 cut(s) 1428, 1530
BbvI GCAGC 6 cut(s) 173, 303, 320, 737, 895, 1039
BccI CCATC 5 cut(s) 192, 761, 1294, 1365, 1474
BciT130I CCWGG 2 cut(s) 321, 805
BclI TGATCA 2 cut(s) 922, 1126
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 4 cut(s) 113, 279, 1362, 1531
BfmI CTRYAG 2 cut(s) 187, 751
BfuAI ACCTGC 2 cut(s) 282, 1475
BglII AGATCT 1 cut(s) 1207
BisI GCNGC 8 cut(s) 91, 187, 309, 317, 751, 909, 1028, 1160
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 8 cut(s) 92, 188, 310, 318, 752, 910, 1029, 1161
BmcAI AGTACT 2 cut(s) 550, 757
Bme1390I CCNGG 3 cut(s) 321, 585, 805
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 327
BmiI GGNNCC 4 cut(s) 402, 682, 1279, 1392
BmrFI CCNGG 3 cut(s) 321, 585, 805
BmsI GCATC 1 cut(s) 870
BpiI GAAGAC 2 cut(s) 59, 258
Bpu10I CCTNAGC 1 cut(s) 377
Bpu1102I GCTNAGC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 648, 1165
BpuMI CCSGG 1 cut(s) 585
BsaBI GATNNNNATC 1 cut(s) 1008
BsaJI CCNNGG 1 cut(s) 1448
BsaWI WCCGGW 2 cut(s) 1379, 1393
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bsc4I CCNNNNNNNGG 1 cut(s) 1192
Bse118I RCCGGY 1 cut(s) 1379
Bse1I ACTGG 2 cut(s) 356, 1409
Bse3DI GCAATG 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 1008
BseBI CCWGG 2 cut(s) 321, 805
BseDI CCNNGG 1 cut(s) 1448
BseGI GGATG 2 cut(s) 1305, 1376
BseJI GATNNNNATC 1 cut(s) 1008
BseLI CCNNNNNNNGG 1 cut(s) 1192
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 5 cut(s) 203, 234, 326, 391, 437
BseNI ACTGG 2 cut(s) 356, 1409
BseRI GAGGAG 4 cut(s) 260, 393, 637, 1434
BseSI GKGCMC 1 cut(s) 1428
BseXI GCAGC 6 cut(s) 173, 303, 320, 737, 895, 1039
BseYI CCCAGC 2 cut(s) 103, 700
Bsh1236I CGCG 1 cut(s) 1159
BshFI GGCC 2 cut(s) 217, 967
BshNI GGYRCC 1 cut(s) 1277
BshTI ACCGGT 1 cut(s) 1379
BsiHKAI GWGCWC 2 cut(s) 1428, 1530
BsiSI CCGG 3 cut(s) 584, 1380, 1394
BslFI GGGAC 1 cut(s) 1415
BslI CCNNNNNNNGG 1 cut(s) 1192
BsmAI GTCTC 1 cut(s) 638
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 1 cut(s) 1415
BsnI GGCC 2 cut(s) 217, 967
Bsp119I TTCGAA 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 1428, 1530
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 3 cut(s) 90, 1159, 1319
BspANI GGCC 2 cut(s) 217, 967
BspCNI CTCAG 5 cut(s) 204, 235, 325, 390, 436
BspFNI CGCG 1 cut(s) 1159
BspHI TCATGA 1 cut(s) 876
BspLI GGNNCC 4 cut(s) 402, 682, 1279, 1392
BspMAI CTGCAG 2 cut(s) 191, 755
BspMI ACCTGC 2 cut(s) 282, 1475
BspPI GGATC 4 cut(s) 595, 1385, 1398, 1444
BspT104I TTCGAA 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 1277
BsrDI GCAATG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 1379
BsrI ACTGG 2 cut(s) 356, 1409
BssAI RCCGGY 1 cut(s) 1379
BssECI CCNNGG 1 cut(s) 1448
BssNAI GTATAC 1 cut(s) 1473
BssSI CACGAG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 1448
Bst1107I GTATAC 1 cut(s) 1473
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 321, 805
Bst4CI ACNGT 3 cut(s) 548, 899, 1519
Bst6I CTCTTC 2 cut(s) 164, 474
BstBI TTCGAA 1 cut(s) 50
BstDEI CTNAG 6 cut(s) 212, 243, 312, 377, 423, 1241
BstF5I GGATG 2 cut(s) 1305, 1376
BstFNI CGCG 1 cut(s) 1159
BstHHI GCGC 1 cut(s) 1338
BstMAI GTCTC 1 cut(s) 638
BstMWI GCNNNNNNNGC 3 cut(s) 67, 288, 1352
BstNI CCWGG 2 cut(s) 321, 805
BstSCI CCNGG 3 cut(s) 319, 583, 803
BstSFI CTRYAG 2 cut(s) 187, 751
BstSLI GKGCMC 1 cut(s) 1428
BstUI CGCG 1 cut(s) 1159
BstV1I GCAGC 6 cut(s) 173, 303, 320, 737, 895, 1039
BstV2I GAAGAC 2 cut(s) 59, 258
BstX2I RGATCY 4 cut(s) 587, 1207, 1390, 1436
BstYI RGATCY 4 cut(s) 587, 1207, 1390, 1436
BstZ17I GTATAC 1 cut(s) 1473
BsuRI GGCC 2 cut(s) 217, 967
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 1305, 1376
BtsIMutI CAGTG 3 cut(s) 1047, 1111, 1507
BveI ACCTGC 2 cut(s) 282, 1475
CciI TCATGA 1 cut(s) 876
CfoI GCGC 1 cut(s) 1338
Cfr10I RCCGGY 1 cut(s) 1379
Cfr13I GGNCC 1 cut(s) 327
Csp6I GTAC 3 cut(s) 549, 756, 976
CspAI ACCGGT 1 cut(s) 1379
CviAII CATG 7 cut(s) 230, 517, 535, 685, 730, 877, 1201
CviQI GTAC 3 cut(s) 549, 756, 976
DdeI CTNAG 6 cut(s) 212, 243, 312, 377, 423, 1241
DraIII CACNNNGTG 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 164, 474
EarI CTCTTC 2 cut(s) 164, 474
Ecl136II GAGCTC 1 cut(s) 1528
Eco130I CCWWGG 1 cut(s) 1448
Eco24I GRGCYC 1 cut(s) 1530
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 327
Eco53kI GAGCTC 1 cut(s) 1528
Eco57I CTGAAG 2 cut(s) 386, 1483
EcoICRI GAGCTC 1 cut(s) 1528
EcoRII CCWGG 2 cut(s) 319, 803
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 1448
EcoT38I GRGCYC 1 cut(s) 1530
ErhI CCWWGG 1 cut(s) 1448
Esp3I CGTCTC 1 cut(s) 638
FaeI CATG 7 cut(s) 233, 520, 538, 688, 733, 880, 1204
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 1 cut(s) 1415
FatI CATG 7 cut(s) 229, 516, 534, 684, 729, 876, 1200
FauI CCCGC 1 cut(s) 1312
FauNDI CATATG 1 cut(s) 396
FbaI TGATCA 2 cut(s) 922, 1126
FblI GTMKAC 1 cut(s) 1472
Fnu4HI GCNGC 8 cut(s) 91, 187, 309, 317, 751, 909, 1028, 1160
FokI GGATG 2 cut(s) 1312, 1383
FriOI GRGCYC 1 cut(s) 1530
Fsp4HI GCNGC 8 cut(s) 91, 187, 309, 317, 751, 909, 1028, 1160
FspBI CTAG 4 cut(s) 113, 279, 1362, 1531
GlaI GCGC 1 cut(s) 1337
GluI GCNGC 8 cut(s) 91, 187, 309, 317, 751, 909, 1028, 1160
GsaI CCCAGC 2 cut(s) 107, 704
HaeIII GGCC 2 cut(s) 217, 967
HapII CCGG 3 cut(s) 584, 1380, 1394
HhaI GCGC 1 cut(s) 1338
Hin1II CATG 7 cut(s) 233, 520, 538, 688, 733, 880, 1204
Hin6I GCGC 1 cut(s) 1336
HinP1I GCGC 1 cut(s) 1336
HinfI GANTC 5 cut(s) 391, 427, 458, 800, 1293
HpaII CCGG 3 cut(s) 584, 1380, 1394
HphI GGTGA 5 cut(s) 464, 628, 689, 932, 971
Hpy166II GTNNAC 3 cut(s) 1377, 1426, 1473
Hpy188I TCNGA 8 cut(s) 7, 213, 244, 426, 766, 789, 864, 1001
Hpy188III TCNNGA 8 cut(s) 39, 343, 455, 665, 813, 877, 1013, 1297
Hpy8I GTNNAC 3 cut(s) 1377, 1426, 1473
Hpy99I CGWCG 1 cut(s) 1480
HpyAV CCTTC 6 cut(s) 318, 417, 737, 1132, 1381, 1424
HpyCH4III ACNGT 3 cut(s) 548, 899, 1519
HpyCH4V TGCA 8 cut(s) 189, 267, 388, 520, 688, 753, 911, 1426
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 288, 1352
HpyF3I CTNAG 6 cut(s) 212, 243, 312, 377, 423, 1241
Hsp92II CATG 7 cut(s) 233, 520, 538, 688, 733, 880, 1204
HspAI GCGC 1 cut(s) 1336
Ksp22I TGATCA 2 cut(s) 922, 1126
LmnI GCTCC 4 cut(s) 406, 771, 1447, 1525
Lsp1109I GCAGC 6 cut(s) 173, 303, 320, 737, 895, 1039
LweI GCATC 1 cut(s) 870
MaeI CTAG 4 cut(s) 113, 279, 1362, 1531
MaeIII GTNAC 3 cut(s) 108, 428, 776
MflI RGATCY 4 cut(s) 587, 1207, 1390, 1436
MhlI GDGCHC 2 cut(s) 1428, 1530
MluCI AATT 4 cut(s) 236, 261, 476, 1253
MlyI GAGTC 3 cut(s) 385, 436, 809
MmeI TCCRAC 1 cut(s) 1270
MseI TTAA 9 cut(s) 204, 413, 531, 566, 885, 1023, 1056, 1068, 1458
MslI CAYNNNNRTG 2 cut(s) 957, 1431
MspA1I CMGCKG 3 cut(s) 316, 704, 1030
MspI CCGG 3 cut(s) 584, 1380, 1394
MspR9I CCNGG 3 cut(s) 321, 585, 805
MvaI CCWGG 2 cut(s) 321, 805
MvnI CGCG 1 cut(s) 1159
MwoI GCNNNNNNNGC 3 cut(s) 67, 288, 1352
NciI CCSGG 1 cut(s) 585
NdeI CATATG 1 cut(s) 396
NlaIII CATG 7 cut(s) 233, 520, 538, 688, 733, 880, 1204
NlaIV GGNNCC 4 cut(s) 402, 682, 1279, 1392
NmeAIII GCCGAG 1 cut(s) 1306
NmuCI GTSAC 1 cut(s) 428
NspV TTCGAA 1 cut(s) 50
OliI CACNNNNGTG 1 cut(s) 1431
PagI TCATGA 1 cut(s) 876
PaqCI CACCTGC 2 cut(s) 282, 1475
PfeI GAWTC 2 cut(s) 458, 1293
PflMI CCANNNNNTGG 1 cut(s) 1192
PfoI TCCNGGA 1 cut(s) 583
PinAI ACCGGT 1 cut(s) 1379
PkrI GCNGC 8 cut(s) 92, 188, 310, 318, 752, 910, 1029, 1161
PleI GAGTC 3 cut(s) 385, 435, 808
PpsI GAGTC 3 cut(s) 385, 435, 808
PshBI ATTAAT 2 cut(s) 1056, 1068
Psp124BI GAGCTC 1 cut(s) 1530
Psp6I CCWGG 2 cut(s) 319, 803
PspFI CCCAGC 2 cut(s) 103, 700
PspGI CCWGG 2 cut(s) 319, 803
PspN4I GGNNCC 4 cut(s) 402, 682, 1279, 1392
PspPI GGNCC 1 cut(s) 327
PstI CTGCAG 2 cut(s) 191, 755
PsuI RGATCY 4 cut(s) 587, 1207, 1390, 1436
PvuII CAGCTG 3 cut(s) 316, 704, 1030
RsaI GTAC 3 cut(s) 550, 757, 977
RsaNI GTAC 3 cut(s) 549, 756, 976
RseI CAYNNNNRTG 2 cut(s) 957, 1431
SacI GAGCTC 1 cut(s) 1530
SaqAI TTAA 9 cut(s) 204, 413, 531, 566, 885, 1023, 1056, 1068, 1458
SatI GCNGC 8 cut(s) 91, 187, 309, 317, 751, 909, 1028, 1160
Sau96I GGNCC 1 cut(s) 327
ScaI AGTACT 2 cut(s) 550, 757
SchI GAGTC 3 cut(s) 385, 436, 809
ScrFI CCNGG 3 cut(s) 321, 585, 805
SduI GDGCHC 2 cut(s) 1428, 1530
SfaNI GCATC 1 cut(s) 870
SfcI CTRYAG 2 cut(s) 187, 751
SfuI TTCGAA 1 cut(s) 50
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 957, 1431
SmlI CTYRAG 2 cut(s) 663, 1144
SmoI CTYRAG 2 cut(s) 663, 1144
Sse9I AATT 4 cut(s) 236, 261, 476, 1253
SsiI CCGC 3 cut(s) 90, 1159, 1319
SspI AATATT 1 cut(s) 1066
SspMI CTAG 4 cut(s) 113, 279, 1362, 1531
SstI GAGCTC 1 cut(s) 1530
StyD4I CCNGG 3 cut(s) 319, 583, 803
StyI CCWWGG 1 cut(s) 1448
TaaI ACNGT 3 cut(s) 548, 899, 1519
TaqI TCGA 2 cut(s) 50, 299
TaqII GACCGA 1 cut(s) 344
TasI AATT 4 cut(s) 236, 261, 476, 1253
TatI WGTACW 2 cut(s) 548, 755
TauI GCSGC 2 cut(s) 93, 1162
TfiI GAWTC 2 cut(s) 458, 1293
Tru1I TTAA 9 cut(s) 204, 413, 531, 566, 885, 1023, 1056, 1068, 1458
Tru9I TTAA 9 cut(s) 204, 413, 531, 566, 885, 1023, 1056, 1068, 1458
TscAI CASTG 3 cut(s) 1054, 1111, 1507
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 6 cut(s) 186, 308, 316, 750, 908, 1027
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 6 cut(s) 399, 485, 750, 865, 1128, 1189
TspRI CASTG 3 cut(s) 1054, 1111, 1507
Van91I CCANNNNNTGG 1 cut(s) 1192
VneI GTGCAC 1 cut(s) 1424
VpaK11BI GGWCC 1 cut(s) 327
VspI ATTAAT 2 cut(s) 1056, 1068
XapI RAATTY 2 cut(s) 236, 1253
XmiI GTMKAC 1 cut(s) 1472
XspI CTAG 4 cut(s) 113, 279, 1362, 1531
ZrmI AGTACT 2 cut(s) 550, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.