Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

14904293 .. 14907624

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G128800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAATGTGAAGAAAGGACCATGGTCACCTGAAGAAGATGCAAAGCTAAAAGAGTACATAGAAAAATATGGGACCGGAGGGAATTGGATTGCTCTTCCACAAAAAGCTGGTCTTAGGAGATGTGGGAAGAGTTGCAGATTAAGATGGCTTAACTATCTGCGCCCCAACATCAAACATGGAGAATTTTCTGATGAAGAAGACAGGATCATCTGCAACCTCTTTACTAACATTGGAAGCAGGTGGTCCATAATAGCAGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTCAAGAAGAAACTCATGGGATTAAATATTCTTCCATCCCAGATAAAATCCCACTCAGGCACCTTCTCATCTCTTCTTCATCTTCAAGCTTCATTATCATCATCTTCACCATCATCATACAGAGGCAGCAACAACAGCACTGCTTATTATGCACAAACCAGGTCTTTCTCTAGTGCTTTGGAGCCCATTTCATTTTCACCAAGTCTTCTGAGCAGAAGTTCAACTAATGCTGCTTCTGTTCTTCATCAAGTGCACCAAGAGAGGTTTGTGGGTAGGGCCATGCAGCATAATTACCAAGTCAAAGATAACATCTTGATGTTTGGGGGTGAAGCAAGTTGCAGCTCTTCTGATGGGAGTTGCAGCAACCAGATCAGCCAGTGTAGAGACAGAGAGTATGAATATAATTACAATTTCTTCAATGGTGGGGAAGGGCACCAGAAAATCATGCTACCAGATGGGCTTAATGGGTGGAGATCAGAGAAGCAGAATGGCAATGGGATTTGGGAAGATCAAGCCCCATTAGATTATGGCCTTGAAGAAATTAAGCAGTTAATTAGCAGTACCAGTAGTTGCAACAACTTTTTGTTTGATGAAAACAAGACAGAGGAAAAGGCCATGATGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

322

Amino Acids

36.2

Weight (kDa)

8.62

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AccB1I	GGYRCC	2 cut(s)	395, 768
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	83, 898, 959
AgsI	TTSAA	4 cut(s)	422, 558, 754, 872
AjnI	CCWGG	2 cut(s)	292, 494
AluBI	AGCT	7 cut(s)	11, 73, 134, 284, 337, 425, 678
AluI	AGCT	7 cut(s)	11, 73, 134, 284, 337, 425, 678
Alw21I	GWGCWC	2 cut(s)	13, 591
Alw26I	GTCTC	1 cut(s)	714
Alw44I	GTGCAC	1 cut(s)	587
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	3 cut(s)	612, 865, 948
ApaLI	GTGCAC	1 cut(s)	587
ApeKI	GCWGC	6 cut(s)	281, 462, 566, 619, 675, 696
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	4 cut(s)	44, 99, 270, 612
AsuHPI	GGTGA	4 cut(s)	45, 435, 525, 674
AvaII	GGWCC	3 cut(s)	44, 99, 270
BaeGI	GKGCMC	2 cut(s)	591, 771
BanI	GGYRCC	2 cut(s)	395, 768
BanII	GRGCYC	2 cut(s)	13, 522
BbsI	GAAGAC	2 cut(s)	231, 533
Bbv12I	GWGCWC	2 cut(s)	13, 591
BbvI	GCAGC	6 cut(s)	293, 474, 553, 631, 687, 708
BccI	CCATC	5 cut(s)	165, 379, 454, 680, 785
BciT130I	CCWGG	2 cut(s)	294, 496
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	6 cut(s)	282, 463, 567, 620, 676, 697
BlsI	GCNGC	6 cut(s)	283, 464, 568, 621, 677, 698
Bme1390I	CCNGG	2 cut(s)	294, 496
Bme18I	GGWCC	3 cut(s)	44, 99, 270
BmgT120I	GGNCC	4 cut(s)	44, 99, 270, 612
BmiI	GGNNCC	4 cut(s)	100, 397, 519, 770
BmrFI	CCNGG	2 cut(s)	294, 496
BmsI	GCATC	1 cut(s)	55
BoxI	GACNNNNGTC	1 cut(s)	49
BpiI	GAAGAC	2 cut(s)	231, 533
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	101
Bse1I	ACTGG	3 cut(s)	329, 712, 900
Bse3DI	GCAATG	1 cut(s)	835
BseBI	CCWGG	2 cut(s)	294, 496
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	371
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	3 cut(s)	299, 405, 536
BseNI	ACTGG	3 cut(s)	329, 712, 900
BseSI	GKGCMC	2 cut(s)	591, 771
BseXI	GCAGC	6 cut(s)	293, 474, 553, 631, 687, 708
BshFI	GGCC	3 cut(s)	614, 867, 950
BshNI	GGYRCC	2 cut(s)	395, 768
BsiHKAI	GWGCWC	2 cut(s)	13, 591
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	714
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	3 cut(s)	614, 867, 950
Bsp1286I	GDGCHC	4 cut(s)	13, 522, 591, 771
Bsp143I	GATC	4 cut(s)	231, 705, 809, 844
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	3 cut(s)	614, 867, 950
BspCNI	CTCAG	3 cut(s)	298, 404, 537
BspLI	GGNNCC	4 cut(s)	100, 397, 519, 770
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	2 cut(s)	126, 685
BspT107I	GGYRCC	2 cut(s)	395, 768
BsrDI	GCAATG	1 cut(s)	835
BsrI	ACTGG	3 cut(s)	329, 712, 900
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	231, 705, 809, 844
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	294, 496
Bst6I	CTCTTC	4 cut(s)	126, 149, 414, 685
BstDEI	CTNAG	4 cut(s)	140, 285, 391, 545
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	4 cut(s)	234, 708, 812, 847
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	4 cut(s)	231, 705, 809, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 485
BstNI	CCWGG	2 cut(s)	294, 496
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	292, 494
BstSLI	GKGCMC	2 cut(s)	591, 771
BstV1I	GCAGC	6 cut(s)	293, 474, 553, 631, 687, 708
BstV2I	GAAGAC	2 cut(s)	231, 533
BsuRI	GGCC	3 cut(s)	614, 867, 950
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	371
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	474, 719
BveI	ACCTGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	4 cut(s)	44, 99, 270, 612
CsiI	ACCWGGT	1 cut(s)	494
Csp6I	GTAC	3 cut(s)	82, 897, 958
CviAII	CATG	6 cut(s)	48, 203, 352, 616, 781, 952
CviQI	GTAC	3 cut(s)	82, 897, 958
DdeI	CTNAG	4 cut(s)	140, 285, 391, 545
DpnI	GATC	4 cut(s)	233, 707, 811, 846
DpnII	GATC	4 cut(s)	231, 705, 809, 844
Eam1104I	CTCTTC	4 cut(s)	126, 149, 414, 685
EarI	CTCTTC	4 cut(s)	126, 149, 414, 685
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	13, 522
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	3 cut(s)	44, 99, 270
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	292, 494
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	2 cut(s)	13, 522
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	6 cut(s)	51, 206, 355, 619, 784, 955
FalI	AAGNNNNNCTT	3 cut(s)	30, 123, 155
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	6 cut(s)	47, 202, 351, 615, 780, 951
Fnu4HI	GCNGC	6 cut(s)	282, 463, 567, 620, 676, 697
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	2 cut(s)	13, 522
Fsp4HI	GCNGC	6 cut(s)	282, 463, 567, 620, 676, 697
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	6 cut(s)	282, 463, 567, 620, 676, 697
HaeIII	GGCC	3 cut(s)	614, 867, 950
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	51, 206, 355, 619, 784, 955
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	423
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	4 cut(s)	45, 435, 525, 674
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	4 cut(s)	217, 546, 685, 814
Hpy188III	TCNNGA	3 cut(s)	316, 340, 649
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	2 cut(s)	409, 758
HpyCH4V	TGCA	9 cut(s)	68, 162, 240, 488, 589, 619, 675, 696, 909
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 485
HpyF3I	CTNAG	4 cut(s)	140, 285, 391, 545
Hsp92II	CATG	6 cut(s)	51, 206, 355, 619, 784, 955
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	231, 705, 809, 844
LguI	GCTCTTC	2 cut(s)	126, 685
LmnI	GCTCC	2 cut(s)	16, 517
Lsp1109I	GCAGC	6 cut(s)	293, 474, 553, 631, 687, 708
LweI	GCATC	1 cut(s)	55
MabI	ACCWGGT	1 cut(s)	494
MaeI	CTAG	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	20, 51
MalI	GATC	4 cut(s)	233, 707, 811, 846
MboI	GATC	4 cut(s)	231, 705, 809, 844
MhlI	GDGCHC	4 cut(s)	13, 522, 591, 771
MluCI	AATT	7 cut(s)	109, 209, 625, 739, 745, 876, 888
MnlI	CCTC	5 cut(s)	98, 254, 452, 591, 934
MseI	TTAA	6 cut(s)	167, 177, 359, 798, 879, 887
MslI	CAYNNNNRTG	1 cut(s)	650
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	294, 496
MvaI	CCWGG	2 cut(s)	294, 496
MwoI	GCNNNNNNNGC	2 cut(s)	471, 485
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	231, 705, 809, 844
NlaIII	CATG	6 cut(s)	51, 206, 355, 619, 784, 955
NlaIV	GGNNCC	4 cut(s)	100, 397, 519, 770
NmuCI	GTSAC	2 cut(s)	20, 51
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	2 cut(s)	126, 685
PkrI	GCNGC	6 cut(s)	283, 464, 568, 621, 677, 698
PshAI	GACNNNNGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	292, 494
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	2 cut(s)	292, 494
PspN4I	GGNNCC	4 cut(s)	100, 397, 519, 770
PspPI	GGNCC	4 cut(s)	44, 99, 270, 612
RsaI	GTAC	3 cut(s)	83, 898, 959
RsaNI	GTAC	3 cut(s)	82, 897, 958
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	2 cut(s)	126, 685
SaqAI	TTAA	6 cut(s)	167, 177, 359, 798, 879, 887
SatI	GCNGC	6 cut(s)	282, 463, 567, 620, 676, 697
Sau3AI	GATC	4 cut(s)	231, 705, 809, 844
Sau96I	GGNCC	4 cut(s)	44, 99, 270, 612
ScrFI	CCNGG	2 cut(s)	294, 496
SduI	GDGCHC	4 cut(s)	13, 522, 591, 771
SexAI	ACCWGGT	1 cut(s)	494
SfaNI	GCATC	1 cut(s)	55
SinI	GGWCC	3 cut(s)	44, 99, 270
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	7 cut(s)	109, 209, 625, 739, 745, 876, 888
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	2 cut(s)	292, 494
StyI	CCWWGG	1 cut(s)	47
TasI	AATT	7 cut(s)	109, 209, 625, 739, 745, 876, 888
TatI	WGTACW	2 cut(s)	81, 957
Tru1I	TTAA	6 cut(s)	167, 177, 359, 798, 879, 887
Tru9I	TTAA	6 cut(s)	167, 177, 359, 798, 879, 887
TscAI	CASTG	2 cut(s)	481, 719
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	6 cut(s)	281, 462, 566, 619, 675, 696
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	7 cut(s)	234, 404, 417, 516, 569, 747, 942
TspRI	CASTG	2 cut(s)	481, 719
VneI	GTGCAC	1 cut(s)	587
VpaK11BI	GGWCC	3 cut(s)	44, 99, 270
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.