Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Reverse (-)

15197247 .. 15200422

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATGGGCATAATTCCTCACCACTCCGCCACCTTCTCATCTCTTCTTCATCACCAAACTTCAACCTCATCATCTTCACCACCATCATACAGAAGCAGCAACAACACTAGTACTCCTACTTACTACACACATCAACCCAGGTCTTTCACCAGTACTGCTAATCTGGAATCCCATATTCCATTTTCACCAAGTCTTTTAAGTAGTACCAATACTACTACTAATGCTGCTCTTCAAGTGGGTCAAGAGAGTTATGTGAGTCAACCCTTGACGCAACATTATCAAGCCAAAGATAACATCTTGATGTTTGGGGGTACCACTACTGAAGCAAGCTGCAGTTCTTCTGATGGGAGCTATGGTACTGGTTATAGTGAGGTACAGTTGGGTCTGCAAAACTACTTCTACAATAATGGTGCTGAAGCAAACAACCAGAAAATCATGGTGTCAGATAATGGTCTTGGTCTTGATCTTGATCATGACCAGGCTCCATTAGATTATGGCCTTGAAGAGATCAAGCAGTTAATTAGCAGTAGCACTACTACTAGTGGTGGTTGCAACAACTTTTTGTTTGATGAAAACAAGACAGAGGAAAAGGTCATGATGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

202

Amino Acids

22.05

Weight (kDa)

4.9

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	311
AciI	CCGC	1 cut(s)	27
AcuI	CTGAAG	2 cut(s)	342, 435
AfaI	GTAC	7 cut(s)	112, 154, 205, 313, 358, 375, 602
AgsI	TTSAA	3 cut(s)	63, 233, 503
AhlI	ACTAGT	2 cut(s)	107, 539
AjnI	CCWGG	2 cut(s)	137, 477
AluBI	AGCT	2 cut(s)	330, 351
AluI	AGCT	2 cut(s)	330, 351
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	3 cut(s)	96, 224, 330
Asp718I	GGTACC	1 cut(s)	311
AsuHPI	GGTGA	5 cut(s)	11, 44, 69, 139, 177
BanI	GGYRCC	1 cut(s)	311
BbvI	GCAGC	3 cut(s)	108, 211, 317
BccI	CCATC	2 cut(s)	91, 338
BciT130I	CCWGG	2 cut(s)	139, 479
BclI	TGATCA	1 cut(s)	469
BcuI	ACTAGT	2 cut(s)	107, 539
BfaI	CTAG	2 cut(s)	108, 540
BfmI	CTRYAG	1 cut(s)	331
BisI	GCNGC	3 cut(s)	97, 225, 331
BlsI	GCNGC	3 cut(s)	98, 226, 332
BmcAI	AGTACT	2 cut(s)	112, 154
Bme1390I	CCNGG	2 cut(s)	139, 479
BmiI	GGNNCC	2 cut(s)	313, 483
BmrFI	CCNGG	2 cut(s)	139, 479
BsaBI	GATNNNNATC	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 340, 370
Bse1I	ACTGG	2 cut(s)	150, 364
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	139, 479
BseDI	CCNNGG	1 cut(s)	137
BseJI	GATNNNNATC	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	150, 364
BseXI	GCAGC	3 cut(s)	108, 211, 317
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	498
Bsp143I	GATC	3 cut(s)	463, 469, 507
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	498
BspHI	TCATGA	2 cut(s)	472, 594
BspLI	GGNNCC	2 cut(s)	313, 483
BspMAI	CTGCAG	1 cut(s)	335
BspQI	GCTCTTC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	150, 364
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	463, 469, 507
Bst2UI	CCWGG	2 cut(s)	139, 479
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	3 cut(s)	48, 234, 498
BstC8I	GCNNGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	466, 472, 510
BstMBI	GATC	3 cut(s)	463, 469, 507
BstNI	CCWGG	2 cut(s)	139, 479
BstSCI	CCNGG	2 cut(s)	137, 477
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	3 cut(s)	108, 211, 317
BsuRI	GGCC	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	2 cut(s)	472, 594
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	7 cut(s)	111, 153, 204, 312, 357, 374, 601
CviAII	CATG	3 cut(s)	436, 473, 595
CviJI	RGCY	5 cut(s)	284, 330, 351, 482, 498
CviKI_1	RGCY	5 cut(s)	284, 330, 351, 482, 498
CviQI	GTAC	7 cut(s)	111, 153, 204, 312, 357, 374, 601
DpnI	GATC	3 cut(s)	465, 471, 509
DpnII	GATC	3 cut(s)	463, 469, 507
Eam1104I	CTCTTC	3 cut(s)	48, 234, 498
EarI	CTCTTC	3 cut(s)	48, 234, 498
EciI	GGCGGA	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	342, 435
EcoRII	CCWGG	2 cut(s)	137, 477
FaeI	CATG	3 cut(s)	439, 476, 598
FatI	CATG	3 cut(s)	435, 472, 594
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	97, 225, 331
Fsp4HI	GCNGC	3 cut(s)	97, 225, 331
FspBI	CTAG	2 cut(s)	108, 540
GluI	GCNGC	3 cut(s)	97, 225, 331
HaeIII	GGCC	1 cut(s)	498
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	3 cut(s)	439, 476, 598
HincII	GTYRAC	1 cut(s)	260
HindII	GTYRAC	1 cut(s)	260
HinfI	GANTC	2 cut(s)	167, 256
HphI	GGTGA	5 cut(s)	11, 44, 69, 139, 177
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	343, 445
Hpy188III	TCNNGA	7 cut(s)	164, 242, 298, 461, 467, 473, 595
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	333, 388, 552
Hsp92II	CATG	3 cut(s)	439, 476, 598
KpnI	GGTACC	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	463, 469, 507
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	348, 487
LpnPI	CCDG	8 cut(s)	124, 149, 151, 163, 345, 440, 464, 491
Lsp1109I	GCAGC	3 cut(s)	108, 211, 317
MaeI	CTAG	2 cut(s)	108, 540
MalI	GATC	3 cut(s)	465, 471, 509
MboI	GATC	3 cut(s)	463, 469, 507
MboII	GAAGA	6 cut(s)	35, 38, 66, 221, 330, 515
MluCI	AATT	2 cut(s)	12, 519
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	27, 76, 364, 577
MseI	TTAA	2 cut(s)	197, 518
MslI	CAYNNNNRTG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	139, 479
MvaI	CCWGG	2 cut(s)	139, 479
NdeII	GATC	3 cut(s)	463, 469, 507
NlaIII	CATG	3 cut(s)	439, 476, 598
NlaIV	GGNNCC	2 cut(s)	313, 483
PagI	TCATGA	2 cut(s)	472, 594
PciSI	GCTCTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	98, 226, 332
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	137, 477
PspGI	CCWGG	2 cut(s)	137, 477
PspN4I	GGNNCC	2 cut(s)	313, 483
PstI	CTGCAG	1 cut(s)	335
RsaI	GTAC	7 cut(s)	112, 154, 205, 313, 358, 375, 602
RsaNI	GTAC	7 cut(s)	111, 153, 204, 312, 357, 374, 601
RseI	CAYNNNNRTG	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	197, 518
SatI	GCNGC	3 cut(s)	97, 225, 331
Sau3AI	GATC	3 cut(s)	463, 469, 507
ScaI	AGTACT	2 cut(s)	112, 154
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	139, 479
SetI	ASST	7 cut(s)	35, 68, 143, 332, 353, 375, 594
SfcI	CTRYAG	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	299
SpeI	ACTAGT	2 cut(s)	107, 539
Sse9I	AATT	2 cut(s)	12, 519
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	2 cut(s)	108, 540
StyD4I	CCNGG	2 cut(s)	137, 477
TaaI	ACNGT	1 cut(s)	378
TasI	AATT	2 cut(s)	12, 519
TatI	WGTACW	3 cut(s)	110, 152, 600
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	197, 518
Tru9I	TTAA	2 cut(s)	197, 518
TseI	GCWGC	3 cut(s)	96, 224, 330
TspDTI	ATGAA	2 cut(s)	38, 585
XspI	CTAG	2 cut(s)	108, 540
ZrmI	AGTACT	2 cut(s)	112, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.