Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Reverse (-)

10427977 .. 10430262

Gene Structure 2286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGGAGAGCTCCTTGCTGTGACAAGGATAATGTGAAGAAAGGACCATGGTCACCTGAAGAAGATGCAAAGCTTAAAGAGTATATAGAAAAATATGGGACTGGAGGGAACTGGATTGCTCTTCCACAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAGCATGGAGAGTTCTCTGATGAAGAGGATAAGATCATCTGCAACCTCTTTGCTAGCATTGGTAGCAGGTGGTCAATTATAGCAGCTCAATTGCCAGGAAGGACCGACAATGATATCAAGAACTACTGGAACACAAAGCTCAAGAAGAAACTAAACCAATATTCCATGATGGGCATAATTCCTCACCACTTTTCCTCTCTTCTTCATCCCCAAACTTCAACCTCATCATCTTCACCAACATCCTACAGAAGCAGCAACAACAGGACTCCCAGTTACTACACACATCAAGCCAGGTCTTTCAACGGTGCTAATCTGGAATCCCACATTCCATTTTCACCAAGTCTTTTATGTTGTACCAATACTACTACTAATGCTGCTCTTCAAGTTGGTCAAGATAATTTCGTGGGTCAACCTATGATGCAACATTACCAAGCCAAGGATAACATCTTGATGTTTGGGGGTACCACTACTGAAGCTAGCTGCAGTTCTTCTGATGGGAGCTATGGAACTACTGGCTATGGTGAAGTACAGTTGGGTCCGCAAAACTACTTCTACAATAATGGTGCTGAAGCAAACAATCAGAAAATCATGGTGTCAGAGAGCGGTCTTGGTCTTGATCATGACCAGGCTCGATTAGATTATGGCCTTGAAGAGATCAAGCAGTTGATTAGCAGTAGCACTACTACTAGTGGTGGTTGCAACAGCTTTTTGTTTGATGAAAACAAGACAGAGGAAAAGGTCATGATGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

318

Amino Acids

35.38

Weight (kDa)

7.56

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	2.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.9e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	5.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 119	2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	659
AccBSI	CCGCTC	1 cut(s)	801
AciI	CCGC	2 cut(s)	737, 801
AcuI	CTGAAG	3 cut(s)	78, 690, 786
AfaI	GTAC	4 cut(s)	553, 661, 726, 947
AfiI	CCNNNNNNNGG	1 cut(s)	634
AgsI	TTSAA	4 cut(s)	417, 499, 581, 848
AhlI	ACTAGT	1 cut(s)	884
AjnI	CCWGG	3 cut(s)	292, 488, 822
AluBI	AGCT	9 cut(s)	11, 73, 134, 284, 337, 674, 678, 699, 903
AluI	AGCT	9 cut(s)	11, 73, 134, 284, 337, 674, 678, 699, 903
Alw21I	GWGCWC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	188, 841
ApeKI	GCWGC	4 cut(s)	281, 450, 572, 678
Asp718I	GGTACC	1 cut(s)	659
AspS9I	GGNCC	4 cut(s)	44, 189, 300, 734
AsuHPI	GGTGA	5 cut(s)	45, 374, 423, 525, 731
AsuNHI	GCTAGC	2 cut(s)	251, 674
AvaII	GGWCC	3 cut(s)	44, 300, 734
BanI	GGYRCC	1 cut(s)	659
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	4 cut(s)	293, 462, 559, 665
BccI	CCATC	3 cut(s)	165, 361, 686
BciT130I	CCWGG	3 cut(s)	294, 490, 824
BclI	TGATCA	1 cut(s)	814
BcuI	ACTAGT	1 cut(s)	884
BfaI	CTAG	3 cut(s)	252, 675, 885
BfmI	CTRYAG	2 cut(s)	442, 679
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	282, 451, 573, 679
BlsI	GCNGC	4 cut(s)	283, 452, 574, 680
Bme1390I	CCNGG	3 cut(s)	294, 490, 824
Bme18I	GGWCC	3 cut(s)	44, 300, 734
BmgT120I	GGNCC	4 cut(s)	44, 189, 300, 734
BmiI	GGNNCC	2 cut(s)	661, 735
BmrFI	CCNGG	3 cut(s)	294, 490, 824
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	55, 606
BmtI	GCTAGC	2 cut(s)	255, 678
BmuI	ACTGGG	1 cut(s)	462
BoxI	GACNNNNGTC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	47, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	5 cut(s)	106, 116, 329, 468, 715
BseBI	CCWGG	3 cut(s)	294, 490, 824
BseDI	CCNNGG	2 cut(s)	47, 633
BseGI	GGATG	2 cut(s)	403, 437
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	5 cut(s)	106, 116, 329, 468, 715
BseXI	GCAGC	4 cut(s)	293, 462, 559, 665
BshFI	GGCC	2 cut(s)	190, 843
BshNI	GGYRCC	1 cut(s)	659
BsiHKAI	GWGCWC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	190, 843
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	231, 814, 852
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	737, 801
BspANI	GGCC	2 cut(s)	190, 843
BspCNI	CTCAG	1 cut(s)	198
BspHI	TCATGA	2 cut(s)	817, 939
BspLI	GGNNCC	2 cut(s)	661, 735
BspMAI	CTGCAG	1 cut(s)	683
BspMI	ACCTGC	1 cut(s)	255
BspOI	GCTAGC	2 cut(s)	255, 678
BspQI	GCTCTTC	2 cut(s)	126, 582
BspT107I	GGYRCC	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	801
BsrI	ACTGG	5 cut(s)	106, 116, 329, 468, 715
BssECI	CCNNGG	2 cut(s)	47, 633
BssMI	GATC	3 cut(s)	231, 814, 852
BssT1I	CCWWGG	2 cut(s)	47, 633
Bst2UI	CCWGG	3 cut(s)	294, 490, 824
Bst4CI	ACNGT	2 cut(s)	503, 729
Bst6I	CTCTTC	5 cut(s)	126, 216, 402, 582, 843
BstC8I	GCNNGC	2 cut(s)	253, 676
BstDEI	CTNAG	2 cut(s)	140, 185
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	403, 437
BstKTI	GATC	3 cut(s)	234, 817, 855
BstMBI	GATC	3 cut(s)	231, 814, 852
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	3 cut(s)	294, 490, 824
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	3 cut(s)	292, 488, 822
BstSFI	CTRYAG	2 cut(s)	442, 679
BstV1I	GCAGC	4 cut(s)	293, 462, 559, 665
BsuRI	GGCC	2 cut(s)	190, 843
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	403, 437
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	253, 676
CciI	TCATGA	2 cut(s)	817, 939
Cfr13I	GGNCC	4 cut(s)	44, 189, 300, 734
Csp6I	GTAC	4 cut(s)	552, 660, 725, 946
CviAII	CATG	6 cut(s)	48, 203, 364, 787, 818, 940
CviQI	GTAC	4 cut(s)	552, 660, 725, 946
DdeI	CTNAG	2 cut(s)	140, 185
DpnI	GATC	3 cut(s)	233, 816, 854
DpnII	GATC	3 cut(s)	231, 814, 852
Eam1104I	CTCTTC	5 cut(s)	126, 216, 402, 582, 843
EarI	CTCTTC	5 cut(s)	126, 216, 402, 582, 843
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	47, 633
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	3 cut(s)	44, 300, 734
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	3 cut(s)	78, 690, 786
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	292, 488, 822
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	2 cut(s)	47, 633
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	2 cut(s)	47, 633
FaeI	CATG	6 cut(s)	51, 206, 367, 790, 821, 943
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	6 cut(s)	47, 202, 363, 786, 817, 939
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	4 cut(s)	282, 451, 573, 679
FokI	GGATG	2 cut(s)	390, 424
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	4 cut(s)	282, 451, 573, 679
FspBI	CTAG	3 cut(s)	252, 675, 885
GluI	GCNGC	4 cut(s)	282, 451, 573, 679
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	190, 843
Hin1II	CATG	6 cut(s)	51, 206, 367, 790, 821, 943
HincII	GTYRAC	1 cut(s)	608
HindII	GTYRAC	1 cut(s)	608
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	463, 515
HphI	GGTGA	5 cut(s)	45, 374, 423, 525, 731
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	4 cut(s)	217, 691, 780, 796
Hpy188III	TCNNGA	8 cut(s)	316, 340, 512, 590, 646, 812, 818, 940
Hpy8I	GTNNAC	1 cut(s)	608
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	2 cut(s)	503, 729
HpyCH4V	TGCA	6 cut(s)	68, 162, 240, 619, 681, 897
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	2 cut(s)	140, 185
Hsp92II	CATG	6 cut(s)	51, 206, 367, 790, 821, 943
KpnI	GGTACC	1 cut(s)	663
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	3 cut(s)	231, 814, 852
LguI	GCTCTTC	2 cut(s)	126, 582
LmnI	GCTCC	2 cut(s)	16, 696
Lsp1109I	GCAGC	4 cut(s)	293, 462, 559, 665
LweI	GCATC	2 cut(s)	55, 606
MaeI	CTAG	3 cut(s)	252, 675, 885
MaeIII	GTNAC	3 cut(s)	20, 51, 470
MalI	GATC	3 cut(s)	233, 816, 854
MbiI	CCGCTC	1 cut(s)	801
MboI	GATC	3 cut(s)	231, 814, 852
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	4 cut(s)	273, 287, 375, 595
MlyI	GAGTC	1 cut(s)	457
MnlI	CCTC	7 cut(s)	98, 217, 254, 390, 403, 430, 922
MseI	TTAA	3 cut(s)	75, 177, 198
MslI	CAYNNNNRTG	1 cut(s)	647
MspR9I	CCNGG	3 cut(s)	294, 490, 824
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	3 cut(s)	294, 490, 824
MwoI	GCNNNNNNNGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	231, 814, 852
NheI	GCTAGC	2 cut(s)	251, 674
NlaIII	CATG	6 cut(s)	51, 206, 367, 790, 821, 943
NlaIV	GGNNCC	2 cut(s)	661, 735
NmuCI	GTSAC	2 cut(s)	20, 51
PagI	TCATGA	2 cut(s)	817, 939
PaqCI	CACCTGC	1 cut(s)	255
PciSI	GCTCTTC	2 cut(s)	126, 582
PfeI	GAWTC	1 cut(s)	515
PkrI	GCNGC	4 cut(s)	283, 452, 574, 680
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PshAI	GACNNNNGTC	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	3 cut(s)	292, 488, 822
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	292, 488, 822
PspN4I	GGNNCC	2 cut(s)	661, 735
PspPI	GGNCC	4 cut(s)	44, 189, 300, 734
PstI	CTGCAG	1 cut(s)	683
RsaI	GTAC	4 cut(s)	553, 661, 726, 947
RsaNI	GTAC	4 cut(s)	552, 660, 725, 946
RseI	CAYNNNNRTG	1 cut(s)	647
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	2 cut(s)	126, 582
SaqAI	TTAA	3 cut(s)	75, 177, 198
SatI	GCNGC	4 cut(s)	282, 451, 573, 679
Sau3AI	GATC	3 cut(s)	231, 814, 852
Sau96I	GGNCC	4 cut(s)	44, 189, 300, 734
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	3 cut(s)	294, 490, 824
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	55, 606
SfcI	CTRYAG	2 cut(s)	442, 679
SinI	GGWCC	3 cut(s)	44, 300, 734
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SpeI	ACTAGT	1 cut(s)	884
Sse9I	AATT	4 cut(s)	273, 287, 375, 595
SsiI	CCGC	2 cut(s)	737, 801
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	3 cut(s)	252, 675, 885
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	3 cut(s)	292, 488, 822
StyI	CCWWGG	2 cut(s)	47, 633
TaaI	ACNGT	2 cut(s)	503, 729
TaqI	TCGA	1 cut(s)	829
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	4 cut(s)	273, 287, 375, 595
TatI	WGTACW	2 cut(s)	724, 945
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	3 cut(s)	75, 177, 198
Tru9I	TTAA	3 cut(s)	75, 177, 198
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	4 cut(s)	281, 450, 572, 678
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	3 cut(s)	234, 392, 930
VpaK11BI	GGWCC	3 cut(s)	44, 300, 734
XspI	CTAG	3 cut(s)	252, 675, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.