Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

61807008 .. 61827022

Gene Structure 20015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG387100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTCCTCCTTCATTAACAACTTCTCAGAGTCATAGATCAAACCCTCCCCCATTTCCTGTTTCTTCTTCTCTTCACCAATTTCAAAACCAACCATTTCATCATCAACCTCTCTCACTCATGCACAAAGACCTTAACATGATGACTTACAGTACTTACACCCCAACCTTAACAAGCCCTGCTACTCCGGGATCTTTCTCATCAGGGTTTGAAATAATGCCAAACATTTCAACCCCTCTCACCAACTACTCCTCCCTTTTTCAAACTCAAGAGTGCCTTGTGGGTTCCATGCACTACAATCACCCAGCTGTGAAGAAAAATCTAAACCTCATCATGTTTGGAAGTGAAGGAAGCTGCAGTACTTCATCTGATGGGAGCTGTAACAACAATCAGATCAGCTATGAGTCCAGTCGATCAGGAAATATCAAACAAGAGGAAATGGGTATGGGTTTTCAGCTTGAAGATCAGAACCAGAAGTTCATGATGCTTAACTATGGAAACAGTAGTAGTGCAGCAATATCAGATGATCATCATAACTATATCAACAACAACAACCAATGGGGTGAGAGGCCAAATGGGTACAATGGTAATAATACCCGTTTCGGAGATTATGATCTTGAAGATGTTAAGCAGCTGATTAGTAGTAGTAGCACTGATATTAATATCAATATTAATAATGATAATGGGTCTATATCTAACAGCTTGTTCAGTGTTGATGAAAACAAGACTGATCATAAAGAGAAGGAGGAAATCCACATAAACAATAACAAGCGGGCCTTCATGGTTCACGGTTCATCTAGCACAACGGTGTGGGTATTTTATTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

276

Amino Acids

30.86

Weight (kDa)

5.67

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	772
AclWI	GGATC	1 cut(s)	199
AfaI	GTAC	3 cut(s)	154, 361, 581
AgsI	TTSAA	7 cut(s)	86, 212, 231, 263, 461, 620, 826
AleI	CACNNNNGTG	1 cut(s)	806
AluBI	AGCT	7 cut(s)	308, 354, 378, 399, 457, 634, 702
AluI	AGCT	7 cut(s)	308, 354, 378, 399, 457, 634, 702
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	569, 774
ApeKI	GCWGC	3 cut(s)	354, 512, 631
AseI	ATTAAT	2 cut(s)	660, 672
AspS9I	GGNCC	1 cut(s)	774
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	4 cut(s)	68, 232, 293, 575
BaeI	ACNNNNGTAYC	2 cut(s)	571, 604
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BbvI	GCAGC	3 cut(s)	341, 524, 643
BccI	CCATC	1 cut(s)	365
BclI	TGATCA	2 cut(s)	526, 730
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	1 cut(s)	798
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	3 cut(s)	355, 513, 632
BlsI	GCNGC	3 cut(s)	356, 514, 633
BmcAI	AGTACT	2 cut(s)	154, 361
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	774
BmiI	GGNNCC	2 cut(s)	6, 286
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	189
BsaBI	GATNNNNATC	2 cut(s)	528, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse1I	ACTGG	1 cut(s)	408
Bse8I	GATNNNNATC	2 cut(s)	528, 612
BseJI	GATNNNNATC	2 cut(s)	528, 612
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	341, 524, 643
BseYI	CCCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	571, 776
BsiSI	CCGG	1 cut(s)	188
BsnI	GGCC	2 cut(s)	571, 776
Bsp143I	GATC	8 cut(s)	38, 191, 393, 413, 463, 526, 613, 730
BspACI	CCGC	1 cut(s)	772
BspANI	GGCC	2 cut(s)	571, 776
BspCNI	CTCAG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	6, 286
BspMAI	CTGCAG	1 cut(s)	359
BspPI	GGATC	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	408
BssMI	GATC	8 cut(s)	38, 191, 393, 413, 463, 526, 613, 730
Bst4CI	ACNGT	4 cut(s)	152, 503, 791, 808
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	774
BstDEI	CTNAG	1 cut(s)	27
BstKTI	GATC	8 cut(s)	41, 194, 396, 416, 466, 529, 616, 733
BstMBI	GATC	8 cut(s)	38, 191, 393, 413, 463, 526, 613, 730
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	341, 524, 643
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	571, 776
BtsIMutI	CAGTG	2 cut(s)	651, 715
Cac8I	GCNNGC	1 cut(s)	774
CciI	TCATGA	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	774
Csp6I	GTAC	3 cut(s)	153, 360, 580
CviAII	CATG	6 cut(s)	121, 139, 289, 334, 481, 781
CviQI	GTAC	3 cut(s)	153, 360, 580
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	8 cut(s)	40, 193, 395, 415, 465, 528, 615, 732
DpnII	GATC	8 cut(s)	38, 191, 393, 413, 463, 526, 613, 730
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
FaeI	CATG	6 cut(s)	124, 142, 292, 337, 484, 784
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 761, 793
FatI	CATG	6 cut(s)	120, 138, 288, 333, 480, 780
FauI	CCCGC	1 cut(s)	765
FbaI	TGATCA	2 cut(s)	526, 730
Fnu4HI	GCNGC	3 cut(s)	355, 513, 632
Fsp4HI	GCNGC	3 cut(s)	355, 513, 632
FspBI	CTAG	1 cut(s)	798
GluI	GCNGC	3 cut(s)	355, 513, 632
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	571, 776
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	6 cut(s)	124, 142, 292, 337, 484, 784
HinfI	GANTC	2 cut(s)	31, 404
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	4 cut(s)	68, 232, 293, 575
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	6 cut(s)	30, 370, 393, 468, 523, 605
Hpy188III	TCNNGA	4 cut(s)	269, 417, 481, 617
Hpy8I	GTNNAC	1 cut(s)	787
HpyAV	CCTTC	4 cut(s)	21, 341, 736, 787
HpyCH4III	ACNGT	4 cut(s)	152, 503, 791, 808
HpyCH4V	TGCA	4 cut(s)	124, 292, 357, 512
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	124, 142, 292, 337, 484, 784
Ksp22I	TGATCA	2 cut(s)	526, 730
Kzo9I	GATC	8 cut(s)	38, 191, 393, 413, 463, 526, 613, 730
LmnI	GCTCC	2 cut(s)	10, 375
LpnPI	CCDG	8 cut(s)	72, 189, 192, 201, 318, 402, 421, 485
Lsp1109I	GCAGC	3 cut(s)	341, 524, 643
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	1 cut(s)	798
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	8 cut(s)	40, 193, 395, 415, 465, 528, 615, 732
MboI	GATC	8 cut(s)	38, 191, 393, 413, 463, 526, 613, 730
MboII	GAAGA	6 cut(s)	57, 60, 65, 325, 473, 632
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	40, 413
MnlI	CCTC	9 cut(s)	18, 57, 120, 246, 262, 338, 427, 561, 739
MseI	TTAA	7 cut(s)	17, 135, 170, 489, 627, 660, 672
MslI	CAYNNNNRTG	1 cut(s)	806
MspA1I	CMGCKG	2 cut(s)	308, 634
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	189
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	8 cut(s)	38, 191, 393, 413, 463, 526, 613, 730
NlaIII	CATG	6 cut(s)	124, 142, 292, 337, 484, 784
NlaIV	GGNNCC	2 cut(s)	6, 286
OliI	CACNNNNGTG	1 cut(s)	806
PagI	TCATGA	1 cut(s)	480
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	3 cut(s)	356, 514, 633
PleI	GAGTC	2 cut(s)	39, 412
PpsI	GAGTC	2 cut(s)	39, 412
PshBI	ATTAAT	2 cut(s)	660, 672
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	6, 286
PspPI	GGNCC	1 cut(s)	774
PstI	CTGCAG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	2 cut(s)	308, 634
RsaI	GTAC	3 cut(s)	154, 361, 581
RsaNI	GTAC	3 cut(s)	153, 360, 580
RseI	CAYNNNNRTG	1 cut(s)	806
SaqAI	TTAA	7 cut(s)	17, 135, 170, 489, 627, 660, 672
SatI	GCNGC	3 cut(s)	355, 513, 632
Sau3AI	GATC	8 cut(s)	38, 191, 393, 413, 463, 526, 613, 730
Sau96I	GGNCC	1 cut(s)	774
ScaI	AGTACT	2 cut(s)	154, 361
SchI	GAGTC	2 cut(s)	40, 413
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	772
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	1 cut(s)	798
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	4 cut(s)	152, 503, 791, 808
TaqI	TCGA	1 cut(s)	412
TasI	AATT	1 cut(s)	80
TatI	WGTACW	2 cut(s)	152, 359
Tru1I	TTAA	7 cut(s)	17, 135, 170, 489, 627, 660, 672
Tru9I	TTAA	7 cut(s)	17, 135, 170, 489, 627, 660, 672
TscAI	CASTG	2 cut(s)	658, 715
TseI	GCWGC	3 cut(s)	354, 512, 631
TspDTI	ATGAA	6 cut(s)	89, 354, 469, 732, 769, 783
TspRI	CASTG	2 cut(s)	658, 715
VspI	ATTAAT	2 cut(s)	660, 672
XspI	CTAG	1 cut(s)	798
ZrmI	AGTACT	2 cut(s)	154, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.