Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Forward (+)

24585796 .. 24587916

Gene Structure 2121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGGAAGGGCTCCTTGTTGTGACAAGGCAAATGTGAAGAAGGGACCATGGTCACCAGAAGAAGACTCAAAGCTCAAAGAATACATTGACAAGTATGGGACTGGTGGAAATTGGATTGCTCTCCCTCAGAAAGCTGGTTTGAAAAGATGTGGAAAGAGCTGCAGATTGAGATGGCTTAACTATCTGAGGCCAAACATCAAACATGGAGAATTTTCTGAGGAGGAAGACAGAATAATTTGCACCCTCTTCACTAGCATTGGAAGCAGGTGGTCAATCATAGCAGCCCAGCTGCCAGGAAGAACTGACAACGATATCAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTCAGGGATATGCAAACTCATATGGCTCCTCCTTCATTAACAACTTCTCAGAGTCATAGGTTAAAGCCTCCCCCATTTCCTGTGTCTTCCTCTCTTCACCAATTTCAAAGCCAACCATTTCATCATCAACCTCTCTCACTCGTGCACAAAGATCTTAACTTGATGACTTACAGTACTTACGCCCCAACCTTAACAAGCCCTACTACTGGAACTTTTTCATCAGGATTTGAAATAATGCCGAACATTTCAACCTCTCTCACCAACTACTCCCTTTTTCAAACTCAAGAGTGCCTTGTGGGTTCCATGCACTACAATCACCCAGCTGTGAAGAAAAATCTAAACCTCATCATGTTTGGAAGTGAAGGAAGCTGCAGTACTTCATCTGATGGGAGCTGTAACAACAATCCGATTAGCTATGAGTCCAGGCCATCTGGAAATCTTAAGCAAGAAGAAATGGGTATGGGTTTTCAGCTTGAAGATCAGAACCAGAAGTTTATGATGCTTAACTATGGAAACAGTACTACTAGTGCTGCAATATCAGGTGATCATCATAACTATGCCAACAACAACAACAACCAATGGGGTGAGAAGCCAAATCGGTACAACGTTAACAATACCCGTTTTGGAGATTATGATCTTGAAGATGTTAAGCAGCTGATTAGTAGTAGTAGCACTGATATTAATATCAATATTGATAATGATAATCAGTCTATATCTAACAGCTTGTTCAGTGTTGATGAAAACAAGACTGACCATAAGGAGAAGGTGATGTATTTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009785 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0097159 GO:0097305 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

377

Amino Acids

42.55

Weight (kDa)

8.03

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 62	8.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.9e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 111	6.6e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 118	1.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AclI	AACGTT	1 cut(s)	954
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	4 cut(s)	523, 724, 868, 950
AfiI	CCNNNNNNNGG	1 cut(s)	554
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	7 cut(s)	142, 455, 578, 597, 626, 824, 989
AhlI	ACTAGT	1 cut(s)	872
AjnI	CCWGG	2 cut(s)	292, 770
Alw21I	GWGCWC	1 cut(s)	495
Alw44I	GTGCAC	1 cut(s)	491
AoxI	GGCC	2 cut(s)	188, 773
ApaLI	GTGCAC	1 cut(s)	491
ApeKI	GCWGC	6 cut(s)	159, 281, 289, 717, 878, 1000
ApoI	RAATTY	1 cut(s)	209
AseI	ATTAAT	1 cut(s)	1029
Asp700I	GAANNNNTTC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	7 cut(s)	45, 437, 598, 656, 902, 944, 1126
AvaII	GGWCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	706, 738
BauI	CACGAG	1 cut(s)	488
BbsI	GAAGAC	3 cut(s)	69, 231, 426
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	6 cut(s)	146, 276, 293, 704, 865, 1012
BccI	CCATC	3 cut(s)	165, 728, 784
BciT130I	CCWGG	2 cut(s)	294, 772
BclI	TGATCA	1 cut(s)	892
BcuI	ACTAGT	1 cut(s)	872
BfaI	CTAG	2 cut(s)	252, 873
BfmI	CTRYAG	2 cut(s)	160, 718
BfrI	CTTAAG	1 cut(s)	788
BfuAI	ACCTGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	6 cut(s)	160, 282, 290, 718, 879, 1001
BlsI	GCNGC	6 cut(s)	161, 283, 291, 719, 880, 1002
BmcAI	AGTACT	3 cut(s)	523, 724, 868
Bme1390I	CCNGG	2 cut(s)	294, 772
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	4 cut(s)	12, 45, 375, 649
BmrFI	CCNGG	2 cut(s)	294, 772
BmsI	GCATC	1 cut(s)	837
BoxI	GACNNNNGTC	1 cut(s)	49
BpiI	GAAGAC	3 cut(s)	69, 231, 426
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	615
BsaBI	GATNNNNATC	1 cut(s)	981
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	3 cut(s)	106, 329, 559
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	2 cut(s)	294, 772
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	5 cut(s)	140, 176, 207, 364, 410
BseNI	ACTGG	3 cut(s)	106, 329, 559
BseRI	GAGGAG	2 cut(s)	233, 366
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	6 cut(s)	146, 276, 293, 704, 865, 1012
BseYI	CCCAGC	2 cut(s)	285, 667
BshFI	GGCC	2 cut(s)	190, 775
BsiHKAI	GWGCWC	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	57, 112
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmFI	GGGAC	2 cut(s)	57, 112
BsnI	GGCC	2 cut(s)	190, 775
Bsp1286I	GDGCHC	2 cut(s)	13, 495
Bsp143I	GATC	4 cut(s)	499, 826, 892, 982
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	2 cut(s)	190, 775
BspCNI	CTCAG	5 cut(s)	139, 177, 208, 363, 409
BspLI	GGNNCC	4 cut(s)	12, 45, 375, 649
BspMAI	CTGCAG	2 cut(s)	164, 722
BspMI	ACCTGC	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	788
BsrI	ACTGG	3 cut(s)	106, 329, 559
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	4 cut(s)	499, 826, 892, 982
BssSI	CACGAG	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	2 cut(s)	294, 772
Bst4CI	ACNGT	2 cut(s)	521, 866
Bst6I	CTCTTC	2 cut(s)	251, 447
BstAFI	CTTAAG	1 cut(s)	788
BstDEI	CTNAG	5 cut(s)	126, 185, 216, 350, 396
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstKTI	GATC	4 cut(s)	502, 829, 895, 985
BstMBI	GATC	4 cut(s)	499, 826, 892, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	2 cut(s)	294, 772
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	292, 770
BstSFI	CTRYAG	2 cut(s)	160, 718
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	6 cut(s)	146, 276, 293, 704, 865, 1012
BstV2I	GAAGAC	3 cut(s)	69, 231, 426
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
BsuRI	GGCC	2 cut(s)	190, 775
BtgI	CCRYGG	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	1020, 1084
BveI	ACCTGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	4 cut(s)	522, 723, 867, 949
CviAII	CATG	4 cut(s)	48, 203, 652, 697
CviQI	GTAC	4 cut(s)	522, 723, 867, 949
DdeI	CTNAG	5 cut(s)	126, 185, 216, 350, 396
DpnI	GATC	4 cut(s)	501, 828, 894, 984
DpnII	GATC	4 cut(s)	499, 826, 892, 982
Eam1104I	CTCTTC	2 cut(s)	251, 447
EarI	CTCTTC	2 cut(s)	251, 447
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	292, 770
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	4 cut(s)	51, 206, 655, 700
FalI	AAGNNNNNCTT	3 cut(s)	30, 624, 656
FaqI	GGGAC	2 cut(s)	57, 112
FatI	CATG	4 cut(s)	47, 202, 651, 696
FauNDI	CATATG	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	892
Fnu4HI	GCNGC	6 cut(s)	160, 282, 290, 718, 879, 1001
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	6 cut(s)	160, 282, 290, 718, 879, 1001
FspBI	CTAG	2 cut(s)	252, 873
GluI	GCNGC	6 cut(s)	160, 282, 290, 718, 879, 1001
GsaI	CCCAGC	2 cut(s)	289, 671
HaeIII	GGCC	2 cut(s)	190, 775
Hin1II	CATG	4 cut(s)	51, 206, 655, 700
HincII	GTYRAC	1 cut(s)	958
HindII	GTYRAC	1 cut(s)	958
HinfI	GANTC	3 cut(s)	65, 400, 767
HpaI	GTTAAC	1 cut(s)	958
HphI	GGTGA	7 cut(s)	45, 437, 598, 656, 902, 944, 1126
Hpy166II	GTNNAC	2 cut(s)	493, 958
Hpy188I	TCNGA	7 cut(s)	129, 186, 217, 399, 733, 756, 831
Hpy188III	TCNNGA	5 cut(s)	316, 570, 632, 780, 986
Hpy8I	GTNNAC	2 cut(s)	493, 958
HpyAV	CCTTC	4 cut(s)	34, 390, 704, 1105
HpyCH4III	ACNGT	2 cut(s)	521, 866
HpyCH4IV	ACGT	1 cut(s)	954
HpyCH4V	TGCA	7 cut(s)	162, 240, 361, 493, 655, 720, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	5 cut(s)	126, 185, 216, 350, 396
HpySE526I	ACGT	1 cut(s)	954
Hsp92II	CATG	4 cut(s)	51, 206, 655, 700
Ksp22I	TGATCA	1 cut(s)	892
KspAI	GTTAAC	1 cut(s)	958
Kzo9I	GATC	4 cut(s)	499, 826, 892, 982
LmnI	GCTCC	3 cut(s)	16, 379, 738
Lsp1109I	GCAGC	6 cut(s)	146, 276, 293, 704, 865, 1012
LweI	GCATC	1 cut(s)	837
MaeI	CTAG	2 cut(s)	252, 873
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	3 cut(s)	20, 51, 743
MalI	GATC	4 cut(s)	501, 828, 894, 984
MboI	GATC	4 cut(s)	499, 826, 892, 982
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	2 cut(s)	13, 495
MluCI	AATT	4 cut(s)	109, 209, 234, 449
MlyI	GAGTC	3 cut(s)	59, 409, 776
MroXI	GAANNNNTTC	1 cut(s)	562
MslI	CAYNNNNRTG	1 cut(s)	903
MspA1I	CMGCKG	3 cut(s)	289, 671, 1003
MspCI	CTTAAG	1 cut(s)	788
MspR9I	CCNGG	2 cut(s)	294, 772
MvaI	CCWGG	2 cut(s)	294, 772
MwoI	GCNNNNNNNGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	4 cut(s)	499, 826, 892, 982
NlaIII	CATG	4 cut(s)	51, 206, 655, 700
NlaIV	GGNNCC	4 cut(s)	12, 45, 375, 649
NmuCI	GTSAC	2 cut(s)	20, 51
PaqCI	CACCTGC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	562
PkrI	GCNGC	6 cut(s)	161, 283, 291, 719, 880, 1002
PleI	GAGTC	3 cut(s)	59, 408, 775
PpsI	GAGTC	3 cut(s)	59, 408, 775
PshAI	GACNNNNGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	1029
Psp1406I	AACGTT	1 cut(s)	954
Psp6I	CCWGG	2 cut(s)	292, 770
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	2 cut(s)	285, 667
PspGI	CCWGG	2 cut(s)	292, 770
PspN4I	GGNNCC	4 cut(s)	12, 45, 375, 649
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	2 cut(s)	164, 722
PsuI	RGATCY	1 cut(s)	499
PvuII	CAGCTG	3 cut(s)	289, 671, 1003
RsaI	GTAC	4 cut(s)	523, 724, 868, 950
RsaNI	GTAC	4 cut(s)	522, 723, 867, 949
RseI	CAYNNNNRTG	1 cut(s)	903
SatI	GCNGC	6 cut(s)	160, 282, 290, 718, 879, 1001
Sau3AI	GATC	4 cut(s)	499, 826, 892, 982
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	3 cut(s)	523, 724, 868
SchI	GAGTC	3 cut(s)	59, 409, 776
ScrFI	CCNGG	2 cut(s)	294, 772
SduI	GDGCHC	2 cut(s)	13, 495
SfaNI	GCATC	1 cut(s)	837
SfcI	CTRYAG	2 cut(s)	160, 718
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	903
SmlI	CTYRAG	2 cut(s)	630, 788
SmoI	CTYRAG	2 cut(s)	630, 788
SpeI	ACTAGT	1 cut(s)	872
Sse9I	AATT	4 cut(s)	109, 209, 234, 449
SspI	AATATT	1 cut(s)	1039
SspMI	CTAG	2 cut(s)	252, 873
StyD4I	CCNGG	2 cut(s)	292, 770
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	521, 866
TaiI	ACGT	1 cut(s)	957
TasI	AATT	4 cut(s)	109, 209, 234, 449
TatI	WGTACW	3 cut(s)	521, 722, 866
TscAI	CASTG	2 cut(s)	1027, 1084
TseFI	GTSAC	2 cut(s)	20, 51
TseI	GCWGC	6 cut(s)	159, 281, 289, 717, 878, 1000
Tsp45I	GTSAC	2 cut(s)	20, 51
TspDTI	ATGAA	5 cut(s)	372, 458, 555, 717, 1101
TspRI	CASTG	2 cut(s)	1027, 1084
Vha464I	CTTAAG	1 cut(s)	788
VneI	GTGCAC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	562
XspI	CTAG	2 cut(s)	252, 873
ZrmI	AGTACT	3 cut(s)	523, 724, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.