Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003513

Physical Location & Seq

Genomic Coordinates Reverse (-)

10780925 .. 10782202

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGGAGGGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAGGGACCATGGTCACCAGAAGAAGACTCAAAGCTAAAGGAGTACATAGAGAAATATGGGACTGGTGGGAATTGGATTGCTCTCCCACAGAAAGCTGGTCTGAAGAGATGTGGGAAAAGCTGCAGATTGAGATGGCTTAACTATCTGAGGCCAAACATCAAACATGGAGAATTCTCTGATGAGGAGGACAGAATGATATGCAGCCTCTATGCTAGCATTGGAAGCAGGTGGTCAGTTATAGCTGCTCAGCTGTCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGGGGATGCATATGGCTTCTCCTCCAGCTCGTCACCACCATAGAAATTTACTAAAACCTCCCCCATTTCCTTCTTCTTCTCATCACAGTTACCAAAACCAATCATTGATTCAATCTGAAACTCTCTCATCACTGTACAAAGACCTAAGCAATTACGACAGATCTTTCTTAGGGTTTGAAGTGCCACTGCCACTGCCATCACAAGTTTCACTGACATCCAATAATTTCTCAAATACTTCCACCAACTCCTTTTCTCTTTTCCAAACCCTAAATTACCCAGCTGGAGTGAAGAAAAATAACAACAATAACCTCCTCATGTTTGGAAGTGAAGGAAGTTGCAGTACTTCATCTGCTGGAAGCTGTAATAACCAGATCGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

245

Amino Acids

27.37

Weight (kDa)

9.35

Isoelectric Point (pI)

57.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36890 AT2G36890 AT5G23000
fragaria_vesca	FvH4_3g30950 FvH4_6g16480
malus_domestica	MD00G1032600.v1.1 MD04G1092400.v1.1 MD11G1146200.v1.1 MD12G1110500.v1.1
prunus_persica	Prupe.6G109200_v2.0.a1 Prupe.7G128800_v2.0.a1 Prupe.7G128800_v2.0.a1
pyrus_communis	pycom04g08690 pycom11g11920 pycom12g11110
rosa_chinensis	RchiOBHm_Chr3g0470381 RchiOBHm_Chr5g0057501
rosa_laevigata	RLG00000024272 RLG00000035160
rosa_multiflora	Rmu_sc0000508.1_g000008 Rmu_sc0002383.1_g000019
rosa_roxburghii	Rroxscaffold_1G00022930 Rroxscaffold_6G00410870
rosa_rugosa	Rorug03G0108200.1 Rorug05G0307600
rosa_samantha	Rh3AG158400 Rh3BG182900 Rh3CG173500 Rh3DG191800 Rh5AG376300 Rh5BG387100 Rh5CG410500 Rh5DG401300
rosa_wichuraiana	Rw3G015040 Rw5G035520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	255
Acc36I	ACCTGC	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	209, 397
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	3 cut(s)	83, 488, 694
AgsI	TTSAA	2 cut(s)	464, 530
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	159, 240, 281
ApoI	RAATTY	2 cut(s)	209, 397
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	45, 377
AsuNHI	GCTAGC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	676, 708
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	146, 252, 268
BccI	CCATC	2 cut(s)	165, 556
BfaI	CTAG	1 cut(s)	252
BfmI	CTRYAG	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	3 cut(s)	160, 241, 282
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	3 cut(s)	161, 242, 283
BmcAI	AGTACT	1 cut(s)	694
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	12, 45
BmsI	GCATC	1 cut(s)	348
BmtI	GCTAGC	1 cut(s)	255
BoxI	GACNNNNGTC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	2 cut(s)	360, 654
Bpu10I	CCTNAGC	1 cut(s)	497
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	363, 566
BseMII	CTCAG	2 cut(s)	176, 299
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	3 cut(s)	236, 363, 653
BseXI	GCAGC	3 cut(s)	146, 252, 268
BseYI	CCCAGC	1 cut(s)	628
BshFI	GGCC	1 cut(s)	190
BslFI	GGGAC	2 cut(s)	57, 112
BsmFI	GGGAC	2 cut(s)	57, 112
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	2 cut(s)	512, 723
Bsp1720I	GCTNAGC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	177, 298
BspLI	GGNNCC	2 cut(s)	12, 45
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	512, 723
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	440, 486
Bst6I	CTCTTC	1 cut(s)	137
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	4 cut(s)	185, 285, 497, 520
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	363, 566
BstKTI	GATC	2 cut(s)	515, 726
BstMBI	GATC	2 cut(s)	512, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstPAI	GACNNNNGTC	1 cut(s)	49
BstPI	GGTNACC	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	146, 252, 268
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	363, 566
BtsI	GCAGTG	2 cut(s)	536, 542
BtsIMutI	CAGTG	4 cut(s)	482, 536, 542, 560
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	82, 487, 693
CviAII	CATG	4 cut(s)	48, 203, 352, 667
CviQI	GTAC	3 cut(s)	82, 487, 693
DdeI	CTNAG	4 cut(s)	185, 285, 497, 520
DpnI	GATC	2 cut(s)	514, 725
DpnII	GATC	2 cut(s)	512, 723
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	209
EcoRV	GATATC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	4 cut(s)	51, 206, 355, 670
FaqI	GGGAC	2 cut(s)	57, 112
FatI	CATG	4 cut(s)	47, 202, 351, 666
FauNDI	CATATG	1 cut(s)	363
Fnu4HI	GCNGC	3 cut(s)	160, 241, 282
FokI	GGATG	2 cut(s)	370, 553
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	3 cut(s)	160, 241, 282
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	3 cut(s)	160, 241, 282
GsaI	CCCAGC	1 cut(s)	632
GsuI	CTGGAG	2 cut(s)	360, 654
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	51, 206, 355, 670
HinfI	GANTC	2 cut(s)	65, 460
HphI	GGTGA	2 cut(s)	45, 377
Hpy188I	TCNGA	4 cut(s)	141, 186, 217, 469
Hpy188III	TCNNGA	2 cut(s)	316, 340
HpyAV	CCTTC	3 cut(s)	34, 432, 674
HpyCH4III	ACNGT	2 cut(s)	440, 486
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	162, 240, 361, 690
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	4 cut(s)	185, 285, 497, 520
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	51, 206, 355, 670
Kzo9I	GATC	2 cut(s)	512, 723
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	3 cut(s)	146, 252, 268
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	4 cut(s)	20, 51, 383, 440
MalI	GATC	2 cut(s)	514, 725
MboI	GATC	2 cut(s)	512, 723
MboII	GAAGA	8 cut(s)	49, 71, 74, 154, 355, 417, 420, 652
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	6 cut(s)	109, 209, 397, 502, 574, 622
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	8 cut(s)	180, 214, 217, 254, 384, 420, 671, 674
Mph1103I	ATGCAT	1 cut(s)	363
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	289, 632
MwoI	GCNNNNNNNGC	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	363
NdeII	GATC	2 cut(s)	512, 723
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	51, 206, 355, 670
NlaIV	GGNNCC	2 cut(s)	12, 45
NmuCI	GTSAC	3 cut(s)	20, 51, 383
NsiI	ATGCAT	1 cut(s)	363
PaqCI	CACCTGC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	161, 242, 283
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PshAI	GACNNNNGTC	1 cut(s)	49
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	12, 45
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	512
PvuII	CAGCTG	2 cut(s)	289, 632
RsaI	GTAC	3 cut(s)	83, 488, 694
RsaNI	GTAC	3 cut(s)	82, 487, 693
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	3 cut(s)	160, 241, 282
Sau3AI	GATC	2 cut(s)	512, 723
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	6 cut(s)	109, 209, 397, 502, 574, 622
SspMI	CTAG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	440, 486
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	726
TasI	AATT	6 cut(s)	109, 209, 397, 502, 574, 622
TatI	WGTACW	3 cut(s)	81, 486, 692
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	4 cut(s)	489, 543, 549, 567
TseFI	GTSAC	3 cut(s)	20, 51, 383
TseI	GCWGC	3 cut(s)	159, 240, 281
Tsp45I	GTSAC	3 cut(s)	20, 51, 383
TspDTI	ATGAA	1 cut(s)	687
TspRI	CASTG	4 cut(s)	489, 543, 549, 567
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	209, 397
XspI	CTAG	1 cut(s)	252
ZrmI	AGTACT	1 cut(s)	694
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.