Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Forward (+)

15514923 .. 15517002

Gene Structure 2080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGAGAGGTCCAAGAAGGTCCCAAAGTTGAACAAGAGAAGAAGCCGGCTGCCACCGTAGTCCCAGTTGAGACTACTGACGGCAAGCCAAAGAGCGGCGGAGGAGATTCCGCGGCAGCAGCAGCACCACCGGTCGCCGCGGTTGTCTCTGCCTTTGTTTACAAAGTGGATATGCACTGTGAAGGCTGCGCTAAGAAGATAAAGCGAATGGTTAAGCACTTTGATGGAGTGAAAGATGTGACGGCAGATACTGGTGGAAATAAGCTTTTGGTGGTCGGAAAGATTGATCCAGTGAAACTCCAGGAGAAGTTGGAGGAGAAAACCAAGAGAAAGGTGGTTCTCGCGAATCCACCGCCAAAGGTAGAGGGACCTGTTGCTGCCGCCGTTGGAGAGAAGAAAGCCGATGGTGGAGATAAGGAGGCGGCTCCTCCTGCTCCTGCTCCGGCAGCTCCAAAAGAGAGCGTGGTGCCTTTAAAGATCAGACTACATTGCGAAGGATGTATTCAGAAAATCAAGAAAATAATATTGAAAATCAAAGGAGTCGAAACAGTGGCTATTGACGGAGCTAAAGACGTGGTGACGGTTAAAGGAACGATAGACGTTAAAGAACTTGTGCCTCTACTCACTAAGAAGCTCAAAAGAACCGTCGAGCCTCTTGTTCCCGCCAAAAAAGATGACGGAGCCGCCGAGAATAAGAAGACGGAAGCTGCCGCTCCTGACGCAAAGAAAGAGGCTCCGTCCGCCGGAGTTAACGAAGCAAAGAAGGAAGGAAGTGACGGTGGAGAGAAGAAAAAAGAGGTTGGAGACGGCGGAGAGAAGAAGAAAGAAGGTGGTGACGGCGGAGAGAAAAAGAAAGAAGCCGGAGACGGAGGAGAGAAGAAGAAAGATGGCGGAGGTGTGCCGGCCCCGGTGGCGATGGTGAATAAGATGGATTATTATGGGTACTCAGCTTATCCAACGGCTCCTATGCATTGGCAAGAAGGACACGTGTACGGTCAGAGTTATTCGATGACAGGTCAGAATTATCCAGTGGGAGGTCAGAGTTATCCAGGTTCAGGATACAACTACGCAAGTGAGAGTTACGTGCCGTACGCGCAGCCAAACGTGAACGCTCCTGGAATGTTCAGCGACGAGAATCCCAATGGTTGCTCTGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

386

Amino Acids

40.36

Weight (kDa)

8.71

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	54 - 107	6e-13	Heavy-metal-associated domain
HMA	PF00403	161 - 217	3.8e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AccBSI	CCGCTC	2 cut(s)	96, 713
AccII	CGCG	4 cut(s)	113, 140, 344, 1094
AclWI	GGATC	1 cut(s)	281
AcvI	CACGTG	1 cut(s)	988
AfaI	GTAC	3 cut(s)	944, 992, 1091
AfiI	CCNNNNNNNGG	4 cut(s)	95, 743, 1034, 1055
AflIII	ACRYGT	2 cut(s)	985, 987
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	32, 529
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	3 cut(s)	300, 1048, 1114
AluBI	AGCT	6 cut(s)	265, 449, 566, 634, 707, 950
AluI	AGCT	6 cut(s)	265, 449, 566, 634, 707, 950
Alw26I	GTCTC	4 cut(s)	65, 151, 798, 858
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	1 cut(s)	903
ApeKI	GCWGC	9 cut(s)	50, 116, 119, 122, 186, 377, 446, 707, 1096
ArsI	GACNNNNNNTTYG	2 cut(s)	630, 662
AsiGI	ACCGGT	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	191, 1096
AspS9I	GGNCC	4 cut(s)	10, 20, 368, 904
AsuC2I	CCSGG	1 cut(s)	908
AsuHPI	GGTGA	3 cut(s)	589, 845, 931
AvaII	GGWCC	3 cut(s)	10, 20, 368
BanI	GGYRCC	1 cut(s)	466
BbrPI	CACGTG	1 cut(s)	988
BbsI	GAAGAC	1 cut(s)	704
BbvI	GCAGC	9 cut(s)	37, 128, 131, 134, 173, 364, 458, 694, 1108
BccI	CCATC	5 cut(s)	218, 398, 881, 910, 922
BceAI	ACGGC	7 cut(s)	97, 258, 368, 823, 853, 975, 1072
BciT130I	CCWGG	3 cut(s)	302, 1050, 1116
BciVI	GTATCC	1 cut(s)	1052
BcnI	CCSGG	1 cut(s)	908
BcoDI	GTCTC	4 cut(s)	65, 151, 798, 858
BfuI	GTATCC	1 cut(s)	1052
BglI	GCCNNNNNGGC	1 cut(s)	911
Bme1390I	CCNGG	4 cut(s)	302, 908, 1050, 1116
Bme18I	GGWCC	3 cut(s)	10, 20, 368
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	4 cut(s)	10, 20, 368, 904
BmiI	GGNNCC	8 cut(s)	22, 369, 426, 468, 682, 735, 906, 963
BmrFI	CCNGG	4 cut(s)	302, 908, 1050, 1116
BmrI	ACTGGG	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	704
BpmI	CTGGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	908
BsaAI	YACGTR	2 cut(s)	988, 1084
BsaJI	CCNNGG	3 cut(s)	111, 138, 906
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 743, 1034, 1055
Bse118I	RCCGGY	3 cut(s)	46, 130, 901
Bse1I	ACTGG	4 cut(s)	65, 256, 290, 1028
Bse3DI	GCAATG	1 cut(s)	487
BseBI	CCWGG	3 cut(s)	302, 1050, 1116
BseDI	CCNNGG	3 cut(s)	111, 138, 906
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	4 cut(s)	95, 743, 1034, 1055
BseMI	GCAATG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	960
BseNI	ACTGG	4 cut(s)	65, 256, 290, 1028
BseRI	GAGGAG	4 cut(s)	117, 329, 417, 885
BseXI	GCAGC	9 cut(s)	37, 128, 131, 134, 173, 364, 458, 694, 1108
Bsh1236I	CGCG	4 cut(s)	113, 140, 344, 1094
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	905
BshNI	GGYRCC	1 cut(s)	466
BshTI	ACCGGT	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	135
BsiSI	CCGG	7 cut(s)	47, 131, 443, 744, 861, 902, 908
BsiWI	CGTACG	1 cut(s)	1089
BslFI	GGGAC	3 cut(s)	6, 47, 381
BslI	CCNNNNNNNGG	4 cut(s)	95, 743, 1034, 1055
BsmAI	GTCTC	4 cut(s)	65, 151, 798, 858
BsmBI	CGTCTC	2 cut(s)	798, 858
BsmFI	GGGAC	3 cut(s)	6, 47, 381
BsnI	GGCC	1 cut(s)	905
Bsp143I	GATC	2 cut(s)	286, 477
Bsp68I	TCGCGA	1 cut(s)	344
BspANI	GGCC	1 cut(s)	905
BspCNI	CTCAG	1 cut(s)	959
BspFNI	CGCG	4 cut(s)	113, 140, 344, 1094
BspLI	GGNNCC	8 cut(s)	22, 369, 426, 468, 682, 735, 906, 963
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	466
BsrBI	CCGCTC	2 cut(s)	96, 713
BsrDI	GCAATG	1 cut(s)	487
BsrFI	RCCGGY	3 cut(s)	46, 130, 901
BsrI	ACTGG	4 cut(s)	65, 256, 290, 1028
BssAI	RCCGGY	3 cut(s)	46, 130, 901
BssECI	CCNNGG	3 cut(s)	111, 138, 906
BssMI	GATC	2 cut(s)	286, 477
Bst2UI	CCWGG	3 cut(s)	302, 1050, 1116
Bst4CI	ACNGT	7 cut(s)	58, 179, 550, 583, 646, 779, 995
BstBAI	YACGTR	2 cut(s)	988, 1084
BstC8I	GCNNGC	3 cut(s)	48, 86, 903
BstDEI	CTNAG	3 cut(s)	192, 627, 946
BstDSI	CCRYGG	2 cut(s)	111, 138
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	4 cut(s)	113, 140, 344, 1094
BstHHI	GCGC	2 cut(s)	191, 1096
BstKTI	GATC	2 cut(s)	289, 480
BstMAI	GTCTC	4 cut(s)	65, 151, 798, 858
BstMBI	GATC	2 cut(s)	286, 477
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	8 cut(s)	119, 122, 431, 446, 719, 740, 911, 1093
BstNI	CCWGG	3 cut(s)	302, 1050, 1116
BstSCI	CCNGG	4 cut(s)	300, 906, 1048, 1114
BstUI	CGCG	4 cut(s)	113, 140, 344, 1094
BstV1I	GCAGC	9 cut(s)	37, 128, 131, 134, 173, 364, 458, 694, 1108
BstV2I	GAAGAC	1 cut(s)	704
BsuI	GTATCC	1 cut(s)	1052
BsuRI	GGCC	1 cut(s)	905
BtgI	CCRYGG	2 cut(s)	111, 138
BtgZI	GCGATG	1 cut(s)	929
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	503
BtsIMutI	CAGTG	4 cut(s)	175, 297, 555, 1035
BtuMI	TCGCGA	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	48, 86, 903
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	2 cut(s)	191, 1096
Cfr10I	RCCGGY	3 cut(s)	46, 130, 901
Cfr13I	GGNCC	4 cut(s)	10, 20, 368, 904
Cfr42I	CCGCGG	2 cut(s)	114, 141
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	3 cut(s)	943, 991, 1090
CspAI	ACCGGT	1 cut(s)	130
CviQI	GTAC	3 cut(s)	943, 991, 1090
DdeI	CTNAG	3 cut(s)	192, 627, 946
DpnI	GATC	2 cut(s)	288, 479
DpnII	GATC	2 cut(s)	286, 477
DraI	TTTAAA	1 cut(s)	474
EciI	GGCGGA	5 cut(s)	114, 730, 825, 855, 906
Eco47I	GGWCC	3 cut(s)	10, 20, 368
Eco72I	CACGTG	1 cut(s)	988
EcoO109I	RGGNCCY	2 cut(s)	20, 368
EcoRII	CCWGG	3 cut(s)	300, 1048, 1114
EcoT22I	ATGCAT	1 cut(s)	972
Esp3I	CGTCTC	2 cut(s)	798, 858
FaiI	YATR	4 cut(s)	173, 939, 968, 1157
FaqI	GGGAC	3 cut(s)	6, 47, 381
FauI	CCCGC	1 cut(s)	670
FokI	GGATG	1 cut(s)	510
GlaI	GCGC	2 cut(s)	190, 1095
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	1 cut(s)	905
HapII	CCGG	7 cut(s)	47, 131, 443, 744, 861, 902, 908
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	2 cut(s)	191, 1096
Hin6I	GCGC	2 cut(s)	189, 1094
HinP1I	GCGC	2 cut(s)	189, 1094
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	4 cut(s)	107, 346, 540, 1135
HpaI	GTTAAC	1 cut(s)	751
HpaII	CCGG	7 cut(s)	47, 131, 443, 744, 861, 902, 908
HphI	GGTGA	3 cut(s)	589, 845, 931
Hpy166II	GTNNAC	4 cut(s)	160, 751, 991, 1108
Hpy188I	TCNGA	6 cut(s)	278, 482, 507, 999, 1020, 1041
Hpy188III	TCNNGA	4 cut(s)	343, 514, 716, 1056
Hpy8I	GTNNAC	4 cut(s)	160, 751, 991, 1108
Hpy99I	CGWCG	2 cut(s)	650, 1133
HpyAV	CCTTC	7 cut(s)	11, 176, 488, 757, 761, 821, 974
HpyCH4III	ACNGT	7 cut(s)	58, 179, 550, 583, 646, 779, 995
HpyCH4IV	ACGT	5 cut(s)	573, 600, 987, 1083, 1104
HpyCH4V	TGCA	2 cut(s)	175, 970
HpyF10VI	GCNNNNNNNGC	8 cut(s)	119, 122, 431, 446, 719, 740, 911, 1093
HpyF3I	CTNAG	3 cut(s)	192, 627, 946
HpySE526I	ACGT	5 cut(s)	573, 600, 987, 1083, 1104
HspAI	GCGC	2 cut(s)	189, 1094
KroI	GCCGGC	2 cut(s)	46, 901
KroNI	GCCGGC	2 cut(s)	48, 903
KspAI	GTTAAC	1 cut(s)	751
KspI	CCGCGG	2 cut(s)	114, 141
Kzo9I	GATC	2 cut(s)	286, 477
Lsp1109I	GCAGC	9 cut(s)	37, 128, 131, 134, 173, 364, 458, 694, 1108
MaeII	ACGT	5 cut(s)	573, 600, 987, 1083, 1104
MaeIII	GTNAC	5 cut(s)	238, 577, 773, 833, 1079
MalI	GATC	2 cut(s)	288, 479
MbiI	CCGCTC	2 cut(s)	96, 713
MboI	GATC	2 cut(s)	286, 477
MboII	GAAGA	9 cut(s)	52, 208, 406, 709, 799, 829, 832, 889, 892
MluCI	AATT	1 cut(s)	1021
MlyI	GAGTC	1 cut(s)	549
MmeI	TCCRAC	5 cut(s)	256, 291, 367, 781, 980
Mph1103I	ATGCAT	1 cut(s)	972
MroNI	GCCGGC	2 cut(s)	46, 901
MseI	TTAA	5 cut(s)	213, 473, 585, 603, 750
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	2 cut(s)	113, 140
MspI	CCGG	7 cut(s)	47, 131, 443, 744, 861, 902, 908
MspR9I	CCNGG	4 cut(s)	302, 908, 1050, 1116
MvaI	CCWGG	3 cut(s)	302, 1050, 1116
MvnI	CGCG	4 cut(s)	113, 140, 344, 1094
MwoI	GCNNNNNNNGC	8 cut(s)	119, 122, 431, 446, 719, 740, 911, 1093
NaeI	GCCGGC	2 cut(s)	48, 903
NciI	CCSGG	1 cut(s)	908
NdeII	GATC	2 cut(s)	286, 477
NgoMIV	GCCGGC	2 cut(s)	46, 901
NlaIV	GGNNCC	8 cut(s)	22, 369, 426, 468, 682, 735, 906, 963
NmeAIII	GCCGAG	1 cut(s)	712
NmuCI	GTSAC	4 cut(s)	238, 577, 773, 833
NruI	TCGCGA	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	972
PcsI	WCGNNNNNNNCGW	1 cut(s)	684
PdiI	GCCGGC	2 cut(s)	48, 903
PfeI	GAWTC	3 cut(s)	107, 346, 1135
Pfl23II	CGTACG	1 cut(s)	1089
PfoI	TCCNGGA	2 cut(s)	300, 1114
PinAI	ACCGGT	1 cut(s)	130
PleI	GAGTC	1 cut(s)	548
PmaCI	CACGTG	1 cut(s)	988
PmlI	CACGTG	1 cut(s)	988
PpsI	GAGTC	1 cut(s)	548
Ppu21I	YACGTR	2 cut(s)	988, 1084
PpuMI	RGGWCCY	2 cut(s)	20, 368
Psp5II	RGGWCCY	2 cut(s)	20, 368
Psp6I	CCWGG	3 cut(s)	300, 1048, 1114
PspCI	CACGTG	1 cut(s)	988
PspGI	CCWGG	3 cut(s)	300, 1048, 1114
PspLI	CGTACG	1 cut(s)	1089
PspN4I	GGNNCC	8 cut(s)	22, 369, 426, 468, 682, 735, 906, 963
PspPI	GGNCC	4 cut(s)	10, 20, 368, 904
PspPPI	RGGWCCY	2 cut(s)	20, 368
PstNI	CAGNNNCTG	1 cut(s)	251
RruI	TCGCGA	1 cut(s)	344
RsaI	GTAC	3 cut(s)	944, 992, 1091
RsaNI	GTAC	3 cut(s)	943, 991, 1090
RseI	CAYNNNNRTG	1 cut(s)	222
SacII	CCGCGG	2 cut(s)	114, 141
SaqAI	TTAA	5 cut(s)	213, 473, 585, 603, 750
Sau3AI	GATC	2 cut(s)	286, 477
Sau96I	GGNCC	4 cut(s)	10, 20, 368, 904
SchI	GAGTC	1 cut(s)	549
ScrFI	CCNGG	4 cut(s)	302, 908, 1050, 1116
Sfr303I	CCGCGG	2 cut(s)	114, 141
SgrBI	CCGCGG	2 cut(s)	114, 141
SinI	GGWCC	3 cut(s)	10, 20, 368
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	1021
SspI	AATATT	1 cut(s)	525
StyD4I	CCNGG	4 cut(s)	300, 906, 1048, 1114
TaaI	ACNGT	7 cut(s)	58, 179, 550, 583, 646, 779, 995
TaiI	ACGT	5 cut(s)	576, 603, 990, 1086, 1107
TaqI	TCGA	3 cut(s)	543, 648, 1007
TasI	AATT	1 cut(s)	1021
TauI	GCSGC	7 cut(s)	99, 116, 140, 383, 425, 686, 713
TfiI	GAWTC	3 cut(s)	107, 346, 1135
Tru1I	TTAA	5 cut(s)	213, 473, 585, 603, 750
Tru9I	TTAA	5 cut(s)	213, 473, 585, 603, 750
TscAI	CASTG	4 cut(s)	182, 297, 555, 1035
TseFI	GTSAC	4 cut(s)	238, 577, 773, 833
TseI	GCWGC	9 cut(s)	50, 116, 119, 122, 186, 377, 446, 707, 1096
Tsp45I	GTSAC	4 cut(s)	238, 577, 773, 833
TspGWI	ACGGA	5 cut(s)	576, 693, 716, 726, 882
TspRI	CASTG	4 cut(s)	182, 297, 555, 1035
VpaK11BI	GGWCC	3 cut(s)	10, 20, 368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.