Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Reverse (-)

17362201 .. 17365803

Gene Structure 3603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG099300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATCGATAGGTTTTGCGAGTGCAAGGGGCATTCCGACCAAATCAAAAAAGCTGTCAAAGACTTCAACTTCCCGGGCGTTGAACAAGTGGAGACAGATGCCGGAGCCAACAAACTGACGGTGACCGGGAAAGTGGACGCCGCCGCTGTGAAGGCGAGACTCGAGGAAAAGATTGACCACAAGGTCGATCTCGTCTCTCCTCAGCCGGCCAAAAAGGAAGGCGGTGGAGGAGGAGGAGGACACAAGAAGAAGATCGACTGCGCCGGAGCCAAGAAAGATGATAAGATAGCAGCTGCCCGAGGCGGCGAGAACAAAGACGGAGGTGGTGACAAGAAGGAAGAACAGAAAGAGGGAAAGAAGGAAGCTGCTCCCGGAGGCGAGAAAACAGAGAAGAAAGAGGAGAAAAAGGAAGCTGCTGGCGGCGGTGAAGGCAGTGGTCAAAATGACACTTACTTTTTTGTTTTTTTATTTTTTTTATATTTTTTATTTTTTATTTTTTTGGTATCATGGGGGCGCAAAGGCCCGGCGCAAGGAAGAAGTCAAAATTACACTTTCACGTTCGAGTATTTCGGTTTCAAGTTTGAGTTTACAATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

199

Amino Acids

21.75

Weight (kDa)

8.57

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AciI	CCGC	6 cut(s)	141, 144, 222, 303, 420, 423
AcoI	YGGCCR	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	67, 83, 577
AluBI	AGCT	4 cut(s)	53, 293, 365, 413
AluI	AGCT	4 cut(s)	53, 293, 365, 413
Alw26I	GTCTC	3 cut(s)	86, 151, 199
Ama87I	CYCGRG	3 cut(s)	73, 161, 297
AoxI	GGCC	2 cut(s)	207, 520
ApeKI	GCWGC	4 cut(s)	290, 293, 365, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
AseI	ATTAAT	1 cut(s)	594
AspLEI	GCGC	3 cut(s)	263, 516, 529
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	5 cut(s)	74, 75, 127, 372, 524
AsuHPI	GGTGA	3 cut(s)	133, 338, 437
AvaI	CYCGRG	3 cut(s)	73, 161, 297
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	280, 302, 352, 400
BcnI	CCSGG	5 cut(s)	74, 75, 127, 372, 524
BcoDI	GTCTC	3 cut(s)	86, 151, 199
BisI	GCNGC	8 cut(s)	141, 144, 291, 294, 304, 366, 414, 421
BlsI	GCNGC	8 cut(s)	142, 145, 292, 295, 305, 367, 415, 422
Bme1390I	CCNGG	5 cut(s)	74, 75, 127, 372, 524
BmeT110I	CYCGRG	3 cut(s)	73, 161, 297
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	106, 268
BmrFI	CCNGG	5 cut(s)	74, 75, 127, 372, 524
BmsI	GCATC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	201
BpuMI	CCSGG	5 cut(s)	74, 75, 127, 372, 524
Bsa29I	ATCGAT	1 cut(s)	6
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	73, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse118I	RCCGGY	1 cut(s)	205
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	73, 298
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	5 cut(s)	189, 243, 246, 249, 413
BseXI	GCAGC	4 cut(s)	280, 302, 352, 400
BshFI	GGCC	2 cut(s)	209, 522
BshVI	ATCGAT	1 cut(s)	6
BsiHKCI	CYCGRG	3 cut(s)	73, 161, 297
BsiSI	CCGG	7 cut(s)	74, 102, 126, 206, 264, 372, 524
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	3 cut(s)	86, 151, 199
BsmBI	CGTCTC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	209, 522
BsoBI	CYCGRG	3 cut(s)	73, 161, 297
Bsp143I	GATC	3 cut(s)	3, 187, 252
BspACI	CCGC	6 cut(s)	141, 144, 222, 303, 420, 423
BspANI	GGCC	2 cut(s)	209, 522
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	106, 268
BsrFI	RCCGGY	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	73, 298
BssMI	GATC	3 cut(s)	3, 187, 252
BssNI	GRCGYC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	207, 418
BstDEI	CTNAG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	121
BstHHI	GCGC	3 cut(s)	263, 516, 529
BstKTI	GATC	3 cut(s)	6, 190, 255
BstMAI	GTCTC	3 cut(s)	86, 151, 199
BstMBI	GATC	3 cut(s)	3, 187, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 429
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	5 cut(s)	72, 73, 125, 370, 522
BstV1I	GCAGC	4 cut(s)	280, 302, 352, 400
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	209, 522
BsuTUI	ATCGAT	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	207, 418
CfoI	GCGC	3 cut(s)	263, 516, 529
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	521
Cfr9I	CCCGGG	1 cut(s)	73
ClaI	ATCGAT	1 cut(s)	6
CseI	GACGC	1 cut(s)	146
CviAII	CATG	1 cut(s)	507
CviJI	RGCY	9 cut(s)	53, 107, 205, 209, 269, 293, 365, 413, 522
CviKI_1	RGCY	9 cut(s)	53, 107, 205, 209, 269, 293, 365, 413, 522
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	3 cut(s)	5, 189, 254
DpnII	GATC	3 cut(s)	3, 187, 252
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	207
Eco88I	CYCGRG	3 cut(s)	73, 161, 297
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	1 cut(s)	510
FaiI	YATR	2 cut(s)	478, 508
FatI	CATG	1 cut(s)	506
Fnu4HI	GCNGC	8 cut(s)	141, 144, 291, 294, 304, 366, 414, 421
Fsp4HI	GCNGC	8 cut(s)	141, 144, 291, 294, 304, 366, 414, 421
GlaI	GCGC	3 cut(s)	262, 515, 528
GluI	GCNGC	8 cut(s)	141, 144, 291, 294, 304, 366, 414, 421
HaeIII	GGCC	2 cut(s)	209, 522
HapII	CCGG	7 cut(s)	74, 102, 126, 206, 264, 372, 524
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	3 cut(s)	263, 516, 529
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	510
Hin6I	GCGC	3 cut(s)	261, 514, 527
HinP1I	GCGC	3 cut(s)	261, 514, 527
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	7 cut(s)	74, 102, 126, 206, 264, 372, 524
HphI	GGTGA	3 cut(s)	133, 338, 437
Hpy166II	GTNNAC	2 cut(s)	136, 588
Hpy188I	TCNGA	1 cut(s)	37
Hpy8I	GTNNAC	2 cut(s)	136, 588
HpyAV	CCTTC	5 cut(s)	145, 212, 328, 352, 422
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 429
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	557
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	510
HspAI	GCGC	3 cut(s)	261, 514, 527
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	3, 187, 252
LmnI	GCTCC	3 cut(s)	104, 266, 373
LpnPI	CCDG	8 cut(s)	87, 115, 139, 219, 277, 385, 402, 537
Lsp1109I	GCAGC	4 cut(s)	280, 302, 352, 400
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	2 cut(s)	121, 326
MalI	GATC	3 cut(s)	5, 189, 254
MboI	GATC	3 cut(s)	3, 187, 252
MboII	GAAGA	5 cut(s)	259, 262, 350, 403, 546
MluCI	AATT	3 cut(s)	544, 591, 595
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	205
MseI	TTAA	1 cut(s)	594
MspA1I	CMGCKG	2 cut(s)	146, 293
MspI	CCGG	7 cut(s)	74, 102, 126, 206, 264, 372, 524
MspR9I	CCNGG	5 cut(s)	74, 75, 127, 372, 524
Mva1269I	GAATGC	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	152, 429
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	5 cut(s)	74, 75, 127, 372, 524
NdeII	GATC	3 cut(s)	3, 187, 252
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	510
NlaIV	GGNNCC	2 cut(s)	106, 268
NmuCI	GTSAC	2 cut(s)	121, 326
PaeR7I	CTCGAG	1 cut(s)	161
PctI	GAATGC	1 cut(s)	31
PdiI	GCCGGC	1 cut(s)	207
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	8 cut(s)	142, 145, 292, 295, 305, 367, 415, 422
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	594
PspEI	GGTNACC	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	106, 268
PspPI	GGNCC	1 cut(s)	521
PspXI	VCTCGAGB	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	8 cut(s)	141, 144, 291, 294, 304, 366, 414, 421
Sau3AI	GATC	3 cut(s)	3, 187, 252
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	5 cut(s)	74, 75, 127, 372, 524
SetI	ASST	8 cut(s)	14, 55, 186, 295, 325, 367, 415, 560
SfaNI	GCATC	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	161
SlaI	CTCGAG	1 cut(s)	161
SmaI	CCCGGG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	544, 591, 595
SsiI	CCGC	6 cut(s)	141, 144, 222, 303, 420, 423
StyD4I	CCNGG	5 cut(s)	72, 73, 125, 370, 522
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	5 cut(s)	6, 162, 186, 255, 561
TasI	AATT	3 cut(s)	544, 591, 595
TauI	GCSGC	4 cut(s)	143, 146, 306, 423
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	121, 326
TseI	GCWGC	4 cut(s)	290, 293, 365, 413
Tsp45I	GTSAC	2 cut(s)	121, 326
TspGWI	ACGGA	1 cut(s)	333
TspMI	CCCGGG	1 cut(s)	73
TspRI	CASTG	1 cut(s)	439
VspI	ATTAAT	1 cut(s)	594
XhoI	CTCGAG	1 cut(s)	161
XmaI	CCCGGG	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.