Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Forward (+)

13360032 .. 13362626

Gene Structure 2595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g11200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGTGAGAAAAAGGAATCCCCGAAGAATGACGGTGAGAAGAAGCCCGCCGACGCCGCCCCCAAGAAGGACGACGGTCTGAACATCGTCGTTTTCAAGACCGACATCCATTGCGAGGGATGTGCTAAGAAAATCAAACGGGCTGTCAAGAATTTTGAAGGCGTTGAACAAGTGAAGACGGATAGTGCAGCCAACAAACTGACTGTGACTGGGAAAGTTGACCCCGCCGGACTCAAGGAGAAGCTCGAACAGAAGATCAAGAAGAAGGTCGAACTGGTTTCTCCTCAGCCCAAAAAAGATGGTGGCGGTGGCGGTGGTGGAGACAAGAAGCCTGCCGCAGATGGAAAGGCTGAGAAAAAGGGTGAAGAGAAAAAGCCAGCTGATGACAAAAAGCCAGCGGATGACAAGAAGGCAGCTGAAGACAAAAAGGCCAAAGAGGCACCCAAAGAGAGTGCTGTGGTGTTGAAGATCAGATTGCATTGTGAGGGTTGCATGCAGAAGATGAAGAGTAAAATCTCCAAGTTTAAAGGTGTTAACAATGTGAGCTTTGACGCATCCAAAGACCTAGTAACGGTGAAGGGCTTCATGGACGTAAAGGAACTAGTACCCTACCTCAAGGAGAAGTTCCGGAGGGCCGTGGAAGTGGTCCCACCCAAGAAAGATGACAGCGGAGCCGCCGACAATAAACCAAAAGACGGCGGCGGGGATAAGAAGGAAAAAGAAGCTGCAGGAGGTGATAAGAAAGAGAAAGACGGAGGTGGTGAGAAGAAAGATAAAGCAGTCGCAGCAGGCGACGGAGAAAAGAAAGAAGTTGTCGCCGCCGCAGGCGGCGGAGGAGGAGGCGCCCCGAAGATGGAGATGAGCAAGATGGAATATAATGGGTACCCTTACCCACCTCCTTCTTACTATTGGTACGACGAAGGGCACGTTTACAACCACAACAAGTTTGTAATGGAGGCTCAAGCGCACGAAGCGCACATTAGCCAAGGGTCGTCTAGCCACGGCTACGCCGTGCCGATAGAACACTATCCTGCACCGCAGATGTTCAGCGACGAGAATCCAAACGGTTGTTCGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

361

Amino Acids

38.72

Weight (kDa)

8.97

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	882
AccB1I	GGYRCC	3 cut(s)	439, 842, 882
AccIII	TCCGGA	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	2 cut(s)	54, 843
AfaI	GTAC	3 cut(s)	606, 884, 914
AfiI	CCNNNNNNNGG	5 cut(s)	67, 115, 571, 695, 853
AgsI	TTSAA	4 cut(s)	97, 158, 167, 466
AhlI	ACTAGT	1 cut(s)	601
AjuI	GAANNNNNNNTTGG	1 cut(s)	1054
AluBI	AGCT	5 cut(s)	244, 380, 416, 546, 725
AluI	AGCT	5 cut(s)	244, 380, 416, 546, 725
Alw26I	GTCTC	1 cut(s)	315
Aor13HI	TCCGGA	1 cut(s)	627
AoxI	GGCC	2 cut(s)	429, 633
ApeKI	GCWGC	4 cut(s)	188, 413, 725, 785
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
Asp700I	GAANNNNTTC	1 cut(s)	581
Asp718I	GGTACC	1 cut(s)	882
AspLEI	GCGC	3 cut(s)	845, 967, 976
AspS9I	GGNCC	2 cut(s)	633, 646
AsuHPI	GGTGA	6 cut(s)	17, 47, 374, 586, 746, 773
AvaII	GGWCC	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	927
BanI	GGYRCC	3 cut(s)	439, 842, 882
BbsI	GAAGAC	2 cut(s)	182, 426
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	200, 425, 712, 797
BccI	CCATC	4 cut(s)	293, 335, 847, 862
BceAI	ACGGC	4 cut(s)	620, 712, 995, 1018
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcoDI	GTCTC	1 cut(s)	315
BcuI	ACTAGT	1 cut(s)	601
BfaI	CTAG	3 cut(s)	566, 602, 996
BfmI	CTRYAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	846
BglI	GCCNNNNNGGC	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	633, 646
BmiI	GGNNCC	5 cut(s)	441, 648, 673, 844, 884
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	563
BmuI	ACTGGG	1 cut(s)	219
BoxI	GACNNNNGTC	1 cut(s)	75
BpiI	GAAGAC	2 cut(s)	182, 426
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	3 cut(s)	218, 599, 945
BsaHI	GRCGYC	2 cut(s)	54, 843
BsaJI	CCNNGG	3 cut(s)	636, 985, 1000
BsaWI	WCCGGW	1 cut(s)	627
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 115, 571, 695, 853
Bse1I	ACTGG	2 cut(s)	214, 279
Bse3DI	GCAATG	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	627
BseDI	CCNNGG	3 cut(s)	636, 985, 1000
BseGI	GGATG	4 cut(s)	105, 125, 406, 554
BseLI	CCNNNNNNNGG	5 cut(s)	67, 115, 571, 695, 853
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	299, 342
BseNI	ACTGG	2 cut(s)	214, 279
BseRI	GAGGAG	3 cut(s)	273, 849, 852
BseSI	GKGCMC	1 cut(s)	927
BseXI	GCAGC	4 cut(s)	200, 425, 712, 797
BsgI	GTGCAG	2 cut(s)	207, 1017
BshFI	GGCC	2 cut(s)	431, 635
BshNI	GGYRCC	3 cut(s)	439, 842, 882
BsiSI	CCGG	2 cut(s)	228, 628
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	5 cut(s)	67, 115, 571, 695, 853
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	2 cut(s)	431, 635
Bsp1286I	GDGCHC	1 cut(s)	927
Bsp13I	TCCGGA	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	255, 468
BspANI	GGCC	2 cut(s)	431, 635
BspCNI	CTCAG	2 cut(s)	298, 343
BspEI	TCCGGA	1 cut(s)	627
BspLI	GGNNCC	5 cut(s)	441, 648, 673, 844, 884
BspMAI	CTGCAG	1 cut(s)	730
BspT107I	GGYRCC	3 cut(s)	439, 842, 882
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	214, 279
BssECI	CCNNGG	3 cut(s)	636, 985, 1000
BssMI	GATC	2 cut(s)	255, 468
BssNI	GRCGYC	2 cut(s)	54, 843
BssT1I	CCWWGG	1 cut(s)	985
Bst4CI	ACNGT	5 cut(s)	35, 77, 205, 574, 1067
Bst6I	CTCTTC	2 cut(s)	360, 500
BstACI	GRCGYC	2 cut(s)	54, 843
BstC8I	GCNNGC	7 cut(s)	48, 333, 378, 396, 494, 790, 826
BstDEI	CTNAG	3 cut(s)	126, 285, 351
BstDSI	CCRYGG	2 cut(s)	636, 1000
BstF5I	GGATG	4 cut(s)	105, 125, 406, 554
BstH2I	RGCGCY	1 cut(s)	846
BstHHI	GCGC	3 cut(s)	845, 967, 976
BstKTI	GATC	2 cut(s)	258, 471
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	2 cut(s)	255, 468
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 437, 785, 971, 973
BstNSI	RCATGY	1 cut(s)	496
BstPAI	GACNNNNGTC	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	726
BstSLI	GKGCMC	1 cut(s)	927
BstV1I	GCAGC	4 cut(s)	200, 425, 712, 797
BstV2I	GAAGAC	2 cut(s)	182, 426
BsuRI	GGCC	2 cut(s)	431, 635
BtgI	CCRYGG	2 cut(s)	636, 1000
BtsCI	GGATG	4 cut(s)	105, 125, 406, 554
Cac8I	GCNNGC	7 cut(s)	48, 333, 378, 396, 494, 790, 826
CfoI	GCGC	3 cut(s)	845, 967, 976
Cfr13I	GGNCC	2 cut(s)	633, 646
CseI	GACGC	2 cut(s)	62, 560
Csp6I	GTAC	3 cut(s)	605, 883, 913
CviAII	CATG	2 cut(s)	493, 586
CviQI	GTAC	3 cut(s)	605, 883, 913
DdeI	CTNAG	3 cut(s)	126, 285, 351
DinI	GGCGCC	1 cut(s)	844
DpnI	GATC	2 cut(s)	257, 470
DpnII	GATC	2 cut(s)	255, 468
DraI	TTTAAA	1 cut(s)	526
Eam1104I	CTCTTC	2 cut(s)	360, 500
EarI	CTCTTC	2 cut(s)	360, 500
EciI	GGCGGA	1 cut(s)	846
Eco130I	CCWWGG	1 cut(s)	985
Eco47I	GGWCC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	985
EgeI	GGCGCC	1 cut(s)	844
EheI	GGCGCC	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	985
FaeI	CATG	2 cut(s)	496, 589
FaiI	YATR	3 cut(s)	494, 587, 876
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	2 cut(s)	492, 585
FauI	CCCGC	3 cut(s)	55, 232, 695
FokI	GGATG	4 cut(s)	92, 132, 413, 541
FspBI	CTAG	3 cut(s)	566, 602, 996
GlaI	GCGC	3 cut(s)	844, 966, 975
HaeII	RGCGCY	1 cut(s)	846
HaeIII	GGCC	2 cut(s)	431, 635
HapII	CCGG	2 cut(s)	228, 628
HgaI	GACGC	2 cut(s)	62, 560
HhaI	GCGC	3 cut(s)	845, 967, 976
Hin1I	GRCGYC	2 cut(s)	54, 843
Hin1II	CATG	2 cut(s)	496, 589
Hin6I	GCGC	3 cut(s)	843, 965, 974
HinP1I	GCGC	3 cut(s)	843, 965, 974
HincII	GTYRAC	2 cut(s)	220, 535
HindII	GTYRAC	2 cut(s)	220, 535
HinfI	GANTC	3 cut(s)	17, 231, 1057
HpaI	GTTAAC	1 cut(s)	535
HpaII	CCGG	2 cut(s)	228, 628
HphI	GGTGA	6 cut(s)	17, 47, 374, 586, 746, 773
Hpy166II	GTNNAC	3 cut(s)	220, 535, 931
Hpy188I	TCNGA	2 cut(s)	81, 473
Hpy188III	TCNNGA	4 cut(s)	97, 148, 259, 628
Hpy8I	GTNNAC	3 cut(s)	220, 535, 931
Hpy99I	CGWCG	6 cut(s)	56, 77, 92, 797, 920, 1055
HpyAV	CCTTC	8 cut(s)	61, 152, 259, 403, 571, 706, 909, 914
HpyCH4III	ACNGT	5 cut(s)	35, 77, 205, 574, 1067
HpyCH4IV	ACGT	2 cut(s)	591, 927
HpyCH4V	TGCA	6 cut(s)	188, 478, 492, 496, 728, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 437, 785, 971, 973
HpyF3I	CTNAG	3 cut(s)	126, 285, 351
HpySE526I	ACGT	2 cut(s)	591, 927
Hsp92I	GRCGYC	2 cut(s)	54, 843
Hsp92II	CATG	2 cut(s)	496, 589
HspAI	GCGC	3 cut(s)	843, 965, 974
KasI	GGCGCC	1 cut(s)	842
Kpn2I	TCCGGA	1 cut(s)	627
KpnI	GGTACC	1 cut(s)	886
KspAI	GTTAAC	1 cut(s)	535
Kzo9I	GATC	2 cut(s)	255, 468
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	4 cut(s)	200, 425, 712, 797
LweI	GCATC	1 cut(s)	563
MaeI	CTAG	3 cut(s)	566, 602, 996
MaeII	ACGT	2 cut(s)	591, 927
MaeIII	GTNAC	2 cut(s)	205, 568
MalI	GATC	2 cut(s)	257, 470
MboI	GATC	2 cut(s)	255, 468
MhlI	GDGCHC	1 cut(s)	927
MluCI	AATT	1 cut(s)	151
Mly113I	GGCGCC	1 cut(s)	843
MlyI	GAGTC	1 cut(s)	225
MroI	TCCGGA	1 cut(s)	627
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	2 cut(s)	525, 534
MspA1I	CMGCKG	4 cut(s)	380, 398, 416, 669
MspI	CCGG	2 cut(s)	228, 628
MwoI	GCNNNNNNNGC	5 cut(s)	56, 437, 785, 971, 973
NarI	GGCGCC	1 cut(s)	843
NdeII	GATC	2 cut(s)	255, 468
NlaIII	CATG	2 cut(s)	496, 589
NlaIV	GGNNCC	5 cut(s)	441, 648, 673, 844, 884
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	496
PaeI	GCATGC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	3 cut(s)	789, 924, 1008
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	2 cut(s)	17, 1057
PleI	GAGTC	1 cut(s)	225
PluTI	GGCGCC	1 cut(s)	846
PpsI	GAGTC	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	75
PspN4I	GGNNCC	5 cut(s)	441, 648, 673, 844, 884
PspPI	GGNCC	2 cut(s)	633, 646
PstI	CTGCAG	1 cut(s)	730
PvuII	CAGCTG	2 cut(s)	380, 416
RsaI	GTAC	3 cut(s)	606, 884, 914
RsaNI	GTAC	3 cut(s)	605, 883, 913
SaqAI	TTAA	2 cut(s)	525, 534
Sau3AI	GATC	2 cut(s)	255, 468
Sau96I	GGNCC	2 cut(s)	633, 646
SchI	GAGTC	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	927
SfaNI	GCATC	1 cut(s)	563
SfcI	CTRYAG	1 cut(s)	726
SfoI	GGCGCC	1 cut(s)	844
SinI	GGWCC	1 cut(s)	646
SmlI	CTYRAG	3 cut(s)	233, 614, 960
SmoI	CTYRAG	3 cut(s)	233, 614, 960
SpeI	ACTAGT	1 cut(s)	601
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	1 cut(s)	151
SspDI	GGCGCC	1 cut(s)	842
SspMI	CTAG	3 cut(s)	566, 602, 996
StyI	CCWWGG	1 cut(s)	985
TaaI	ACNGT	5 cut(s)	35, 77, 205, 574, 1067
TaiI	ACGT	2 cut(s)	594, 930
TaqI	TCGA	2 cut(s)	246, 270
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	1 cut(s)	151
TauI	GCSGC	7 cut(s)	59, 338, 677, 702, 821, 824, 831
TfiI	GAWTC	2 cut(s)	17, 1057
Tru1I	TTAA	2 cut(s)	525, 534
Tru9I	TTAA	2 cut(s)	525, 534
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	4 cut(s)	188, 413, 725, 785
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	518, 574
TspGWI	ACGGA	3 cut(s)	194, 768, 810
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	3 cut(s)	566, 602, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.