MD04G1093300.v1.1

Axoneme-associated protein mst101(2)-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
16845888 .. 16848581
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1093300.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGGGTGAGGAAAAGGAAGCGCCGAAGAATGACGGCGAGAAAAAGCCGGCTGACGCCGCCCCCAAGAAGGACGACGGGGTGGTCACCGTCGTCTTGAAGACCGACATCCATTGCGAGGGATGCGCCAAGAAAATCAAACGAGCTGTCAAGAAATTCGAAGGCGTTGAACAAGTGAAGACGGATAGTGCAGCCAACATACTGACTGTGACTGGGAAAGTTAACCCCGCCGGGCTTAAGGAGAAACTGGAGCAGAAGATTAAGAAGAAGATCGACCTGGTCTCTCCTCAGCCCAAAAAAGATGGCGGTGGCGGTGGTGGAGACAAGAAACCTGCCGCAGAGGGAAAGGCTGAGAAAAAGGATGATGAGAAAAAGCCAGCTGATGAGAAAAAGCCGGCTGAAGACAAAAAGCCCATAGAGGCACCCAAAGAGAATTCTGTGGTGCTGAAGATCAGATTACATTGTGAGGGTTGCATGCACAAGATGAAGAGTAAAATCTCCAAGTTTAAAGGTGTTAACAGTGTGAGCTTTGATGCACCCAAAGACCTGGTAATGGTGAAGGGATTCATGGATGTAAAAGAACTTGTACCCTACCTCAAAGAGAAGTTCCGGAGGGCCGTGGAAGTGGTCCCACCCAAGAAAGATGACGGCGGAGCTGCCGACAAGAAGTCAAAAGACGGCGGTGGTGACAAGAAGGAAAAGGAAGCCGCAGGAGGTGATAAGAAAGAGAAAGACGGTGGTGGTGAGAAGAAAGATAAAGCAGTCGCAGCAGGTGACGGCGCCGCCGCAGGCGGTGGAGGAGGAGGAGGAGGAGGCGCCCCCAAGATGGAGGTGAGCAAGAGGGAGTATAATGGGTACCCTTACCCACCTCCTTCATACTATTGGTACGACGAAGGGCACGTTTACAACCACAACAAGTTTGTCATGGAGGCTCAAGCGCACCAGGCGCACGTTAGCCAGGGGTCCTCTAGCCATGGCTACGCTGTGCCGATGGAACACTACCCTGCGCCGCAGATGTTCAGTGACGAGAATCCGAACGGTTGTTCGGTGATGTAG

Protein Analysis

351

Amino Acids

37.52

Weight (kDa)

9.0

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 34 - 88 3e-13 Heavy-metal-associated domain
HMA PF00403 149 - 205 1.6e-07 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 758
AasI GACNNNNNNGTC 1 cut(s) 80
Acc36I ACCTGC 2 cut(s) 337, 758
Acc65I GGTACC 1 cut(s) 852
AccB1I GGYRCC 4 cut(s) 418, 776, 812, 852
AccIII TCCGGA 1 cut(s) 606
AcsI RAATTY 2 cut(s) 152, 430
AcuI CTGAAG 2 cut(s) 417, 464
AcyI GRCGYC 3 cut(s) 54, 777, 813
AfaI GTAC 3 cut(s) 585, 854, 884
AfiI CCNNNNNNNGG 4 cut(s) 67, 115, 550, 823
AflII CTTAAG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 97, 167
AhdI GACNNNNNGTC 1 cut(s) 664
AjnI CCWGG 4 cut(s) 273, 543, 939, 954
AluBI AGCT 4 cut(s) 143, 377, 525, 653
AluI AGCT 4 cut(s) 143, 377, 525, 653
Alw26I GTCTC 2 cut(s) 283, 312
Aor13HI TCCGGA 1 cut(s) 606
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 3 cut(s) 188, 653, 764
ApoI RAATTY 2 cut(s) 152, 430
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
Asp700I GAANNNNTTC 1 cut(s) 560
Asp718I GGTACC 1 cut(s) 852
AspLEI GCGC 7 cut(s) 22, 125, 779, 815, 937, 946, 1006
AspS9I GGNCC 3 cut(s) 612, 625, 960
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 8 cut(s) 17, 76, 565, 695, 725, 752, 782, 841
AsuII TTCGAA 1 cut(s) 156
AvaII GGWCC 2 cut(s) 625, 960
BaeGI GKGCMC 1 cut(s) 897
BanI GGYRCC 4 cut(s) 418, 776, 812, 852
BbsI GAAGAC 3 cut(s) 104, 182, 405
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 3 cut(s) 200, 640, 776
BccI CCATC 3 cut(s) 293, 817, 982
BceAI ACGGC 5 cut(s) 49, 599, 661, 691, 790
BciT130I CCWGG 4 cut(s) 275, 545, 941, 956
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 283, 312
BfaI CTAG 1 cut(s) 966
BfoI RGCGCY 3 cut(s) 23, 780, 816
BfrI CTTAAG 1 cut(s) 233
BfuAI ACCTGC 2 cut(s) 337, 758
BisI GCNGC 9 cut(s) 57, 189, 333, 654, 705, 765, 780, 783, 1007
BlsI GCNGC 9 cut(s) 58, 190, 334, 655, 706, 766, 781, 784, 1008
Bme1390I CCNGG 5 cut(s) 229, 275, 545, 941, 956
Bme18I GGWCC 2 cut(s) 625, 960
BmeRI GACNNNNNGTC 1 cut(s) 664
BmgT120I GGNCC 3 cut(s) 612, 625, 960
BmiI GGNNCC 6 cut(s) 420, 627, 778, 814, 854, 961
BmrFI CCNGG 5 cut(s) 229, 275, 545, 941, 956
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 110, 520
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 3 cut(s) 104, 182, 405
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 915
BpuMI CCSGG 1 cut(s) 229
BsaHI GRCGYC 3 cut(s) 54, 777, 813
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 3 cut(s) 615, 955, 970
BsaWI WCCGGW 1 cut(s) 606
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 115, 550, 823
Bse118I RCCGGY 2 cut(s) 46, 391
Bse1I ACTGG 2 cut(s) 214, 249
Bse3DI GCAATG 1 cut(s) 109
BseAI TCCGGA 1 cut(s) 606
BseBI CCWGG 4 cut(s) 275, 545, 941, 956
BseDI CCNNGG 3 cut(s) 615, 955, 970
BseGI GGATG 4 cut(s) 105, 125, 364, 574
BseLI CCNNNNNNNGG 4 cut(s) 67, 115, 550, 823
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 299, 339
BseNI ACTGG 2 cut(s) 214, 249
BseRI GAGGAG 6 cut(s) 273, 810, 813, 816, 819, 822
BseSI GKGCMC 1 cut(s) 897
BseXI GCAGC 3 cut(s) 200, 640, 776
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 1 cut(s) 614
BshNI GGYRCC 4 cut(s) 418, 776, 812, 852
BsiSI CCGG 4 cut(s) 47, 228, 392, 607
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 4 cut(s) 67, 115, 550, 823
BsmAI GTCTC 2 cut(s) 283, 312
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 1 cut(s) 614
Bso31I GGTCTC 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 897
Bsp13I TCCGGA 1 cut(s) 606
Bsp143I GATC 2 cut(s) 267, 447
Bsp19I CCATGG 1 cut(s) 970
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 2 cut(s) 298, 340
BspEI TCCGGA 1 cut(s) 606
BspLI GGNNCC 6 cut(s) 420, 627, 778, 814, 854, 961
BspMI ACCTGC 2 cut(s) 337, 758
BspT104I TTCGAA 1 cut(s) 156
BspT107I GGYRCC 4 cut(s) 418, 776, 812, 852
BspTI CTTAAG 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 2 cut(s) 46, 391
BsrI ACTGG 2 cut(s) 214, 249
BssAI RCCGGY 2 cut(s) 46, 391
BssECI CCNNGG 3 cut(s) 615, 955, 970
BssMI GATC 2 cut(s) 267, 447
BssNI GRCGYC 3 cut(s) 54, 777, 813
BssT1I CCWWGG 1 cut(s) 970
Bst2UI CCWGG 4 cut(s) 275, 545, 941, 956
Bst4CI ACNGT 5 cut(s) 88, 205, 518, 734, 1037
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 3 cut(s) 54, 777, 813
BstAFI CTTAAG 1 cut(s) 233
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 5 cut(s) 48, 375, 393, 473, 787
BstDEI CTNAG 2 cut(s) 285, 348
BstDSI CCRYGG 2 cut(s) 615, 970
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 4 cut(s) 105, 125, 364, 574
BstH2I RGCGCY 3 cut(s) 23, 780, 816
BstHHI GCGC 7 cut(s) 22, 125, 779, 815, 937, 946, 1006
BstKTI GATC 2 cut(s) 270, 450
BstMAI GTCTC 2 cut(s) 283, 312
BstMBI GATC 2 cut(s) 267, 447
BstMWI GCNNNNNNNGC 5 cut(s) 56, 120, 764, 941, 943
BstNI CCWGG 4 cut(s) 275, 545, 941, 956
BstNSI RCATGY 1 cut(s) 475
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 5 cut(s) 227, 273, 543, 939, 954
BstSLI GKGCMC 1 cut(s) 897
BstV1I GCAGC 3 cut(s) 200, 640, 776
BstV2I GAAGAC 3 cut(s) 104, 182, 405
BstXI CCANNNNNNTGG 1 cut(s) 544
BsuRI GGCC 1 cut(s) 614
BtgI CCRYGG 2 cut(s) 615, 970
BtsCI GGATG 4 cut(s) 105, 125, 364, 574
BtsIMutI CAGTG 2 cut(s) 523, 1024
BveI ACCTGC 2 cut(s) 337, 758
Cac8I GCNNGC 5 cut(s) 48, 375, 393, 473, 787
CfoI GCGC 7 cut(s) 22, 125, 779, 815, 937, 946, 1006
Cfr10I RCCGGY 2 cut(s) 46, 391
Cfr13I GGNCC 3 cut(s) 612, 625, 960
CseI GACGC 1 cut(s) 62
CsiI ACCWGGT 2 cut(s) 273, 543
Csp6I GTAC 3 cut(s) 584, 853, 883
CviAII CATG 4 cut(s) 472, 565, 922, 971
CviQI GTAC 3 cut(s) 584, 853, 883
DdeI CTNAG 2 cut(s) 285, 348
DinI GGCGCC 2 cut(s) 778, 814
DpnI GATC 2 cut(s) 269, 449
DpnII GATC 2 cut(s) 267, 447
DraI TTTAAA 1 cut(s) 505
DrdI GACNNNNNNGTC 1 cut(s) 80
DriI GACNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 479
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 479
EciI GGCGGA 1 cut(s) 663
Eco130I CCWWGG 1 cut(s) 970
Eco31I GGTCTC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 625, 960
Eco57I CTGAAG 2 cut(s) 417, 464
Eco91I GGTNACC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 960
EcoO65I GGTNACC 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 4 cut(s) 273, 543, 939, 954
EcoT14I CCWWGG 1 cut(s) 970
EgeI GGCGCC 2 cut(s) 778, 814
EheI GGCGCC 2 cut(s) 778, 814
ErhI CCWWGG 1 cut(s) 970
FaeI CATG 4 cut(s) 475, 568, 925, 974
FaiI YATR 8 cut(s) 197, 413, 473, 566, 846, 874, 923, 972
FaqI GGGAC 1 cut(s) 611
FatI CATG 4 cut(s) 471, 564, 921, 970
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 9 cut(s) 57, 189, 333, 654, 705, 765, 780, 783, 1007
FokI GGATG 4 cut(s) 92, 132, 371, 581
Fsp4HI GCNGC 9 cut(s) 57, 189, 333, 654, 705, 765, 780, 783, 1007
FspBI CTAG 1 cut(s) 966
GlaI GCGC 7 cut(s) 21, 124, 778, 814, 936, 945, 1005
GluI GCNGC 9 cut(s) 57, 189, 333, 654, 705, 765, 780, 783, 1007
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 3 cut(s) 23, 780, 816
HaeIII GGCC 1 cut(s) 614
HapII CCGG 4 cut(s) 47, 228, 392, 607
HgaI GACGC 1 cut(s) 62
HhaI GCGC 7 cut(s) 22, 125, 779, 815, 937, 946, 1006
Hin1I GRCGYC 3 cut(s) 54, 777, 813
Hin1II CATG 4 cut(s) 475, 568, 925, 974
Hin6I GCGC 7 cut(s) 20, 123, 777, 813, 935, 944, 1004
HinP1I GCGC 7 cut(s) 20, 123, 777, 813, 935, 944, 1004
HincII GTYRAC 2 cut(s) 220, 514
HindII GTYRAC 2 cut(s) 220, 514
HinfI GANTC 2 cut(s) 561, 1027
HpaI GTTAAC 2 cut(s) 220, 514
HpaII CCGG 4 cut(s) 47, 228, 392, 607
HphI GGTGA 8 cut(s) 17, 76, 565, 695, 725, 752, 782, 841
Hpy166II GTNNAC 3 cut(s) 220, 514, 901
Hpy188I TCNGA 2 cut(s) 452, 1032
Hpy188III TCNNGA 3 cut(s) 94, 148, 607
Hpy8I GTNNAC 3 cut(s) 220, 514, 901
Hpy99I CGWCG 3 cut(s) 77, 92, 890
HpyAV CCTTC 6 cut(s) 61, 152, 550, 685, 879, 884
HpyCH4III ACNGT 5 cut(s) 88, 205, 518, 734, 1037
HpyCH4IV ACGT 2 cut(s) 897, 948
HpyCH4V TGCA 4 cut(s) 188, 471, 475, 533
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 120, 764, 941, 943
HpyF3I CTNAG 2 cut(s) 285, 348
HpySE526I ACGT 2 cut(s) 897, 948
Hsp92I GRCGYC 3 cut(s) 54, 777, 813
Hsp92II CATG 4 cut(s) 475, 568, 925, 974
HspAI GCGC 7 cut(s) 20, 123, 777, 813, 935, 944, 1004
KasI GGCGCC 2 cut(s) 776, 812
Kpn2I TCCGGA 1 cut(s) 606
KpnI GGTACC 1 cut(s) 856
KroI GCCGGC 2 cut(s) 46, 391
KroNI GCCGGC 2 cut(s) 48, 393
KspAI GTTAAC 2 cut(s) 220, 514
Kzo9I GATC 2 cut(s) 267, 447
LmnI GCTCC 2 cut(s) 247, 650
Lsp1109I GCAGC 3 cut(s) 200, 640, 776
LweI GCATC 2 cut(s) 110, 520
MabI ACCWGGT 2 cut(s) 273, 543
MaeI CTAG 1 cut(s) 966
MaeII ACGT 2 cut(s) 897, 948
MaeIII GTNAC 5 cut(s) 82, 205, 683, 770, 1019
MalI GATC 2 cut(s) 269, 449
MboI GATC 2 cut(s) 267, 447
MhlI GDGCHC 1 cut(s) 897
MluCI AATT 2 cut(s) 152, 430
Mly113I GGCGCC 2 cut(s) 777, 813
MroI TCCGGA 1 cut(s) 606
MroNI GCCGGC 2 cut(s) 46, 391
MroXI GAANNNNTTC 1 cut(s) 560
MseI TTAA 5 cut(s) 219, 234, 258, 504, 513
MspA1I CMGCKG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 233
MspI CCGG 4 cut(s) 47, 228, 392, 607
MspR9I CCNGG 5 cut(s) 229, 275, 545, 941, 956
MvaI CCWGG 4 cut(s) 275, 545, 941, 956
MwoI GCNNNNNNNGC 5 cut(s) 56, 120, 764, 941, 943
NaeI GCCGGC 2 cut(s) 48, 393
NarI GGCGCC 2 cut(s) 777, 813
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 970
NdeII GATC 2 cut(s) 267, 447
NgoMIV GCCGGC 2 cut(s) 46, 391
NlaIII CATG 4 cut(s) 475, 568, 925, 974
NlaIV GGNNCC 6 cut(s) 420, 627, 778, 814, 854, 961
NmuCI GTSAC 5 cut(s) 82, 205, 683, 770, 1019
NspI RCATGY 1 cut(s) 475
NspV TTCGAA 1 cut(s) 156
PaeI GCATGC 1 cut(s) 475
PaqCI CACCTGC 1 cut(s) 758
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PdiI GCCGGC 2 cut(s) 48, 393
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 2 cut(s) 561, 1027
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 9 cut(s) 58, 190, 334, 655, 706, 766, 781, 784, 1008
PluTI GGCGCC 2 cut(s) 780, 816
PpuMI RGGWCCY 1 cut(s) 960
Psp5II RGGWCCY 1 cut(s) 960
Psp6I CCWGG 4 cut(s) 273, 543, 939, 954
PspEI GGTNACC 1 cut(s) 82
PspGI CCWGG 4 cut(s) 273, 543, 939, 954
PspN4I GGNNCC 6 cut(s) 420, 627, 778, 814, 854, 961
PspPI GGNCC 3 cut(s) 612, 625, 960
PspPPI RGGWCCY 1 cut(s) 960
PsyI GACNNNGTC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 3 cut(s) 585, 854, 884
RsaNI GTAC 3 cut(s) 584, 853, 883
SaqAI TTAA 5 cut(s) 219, 234, 258, 504, 513
SatI GCNGC 9 cut(s) 57, 189, 333, 654, 705, 765, 780, 783, 1007
Sau3AI GATC 2 cut(s) 267, 447
Sau96I GGNCC 3 cut(s) 612, 625, 960
ScrFI CCNGG 5 cut(s) 229, 275, 545, 941, 956
SduI GDGCHC 1 cut(s) 897
SexAI ACCWGGT 2 cut(s) 273, 543
SfaNI GCATC 2 cut(s) 110, 520
SfoI GGCGCC 2 cut(s) 778, 814
SfuI TTCGAA 1 cut(s) 156
SinI GGWCC 2 cut(s) 625, 960
SmlI CTYRAG 2 cut(s) 233, 930
SmoI CTYRAG 2 cut(s) 233, 930
SphI GCATGC 1 cut(s) 475
Sse9I AATT 2 cut(s) 152, 430
SspDI GGCGCC 2 cut(s) 776, 812
SspMI CTAG 1 cut(s) 966
StyD4I CCNGG 5 cut(s) 227, 273, 543, 939, 954
StyI CCWWGG 1 cut(s) 970
TaaI ACNGT 5 cut(s) 88, 205, 518, 734, 1037
TaiI ACGT 2 cut(s) 900, 951
TaqI TCGA 2 cut(s) 156, 270
TaqII GACCGA 1 cut(s) 116
TasI AATT 2 cut(s) 152, 430
TauI GCSGC 6 cut(s) 59, 335, 707, 782, 785, 1009
TfiI GAWTC 2 cut(s) 561, 1027
Tru1I TTAA 5 cut(s) 219, 234, 258, 504, 513
Tru9I TTAA 5 cut(s) 219, 234, 258, 504, 513
TscAI CASTG 2 cut(s) 523, 1024
TseFI GTSAC 5 cut(s) 82, 205, 683, 770, 1019
TseI GCWGC 3 cut(s) 188, 653, 764
Tsp45I GTSAC 5 cut(s) 82, 205, 683, 770, 1019
TspDTI ATGAA 3 cut(s) 497, 553, 861
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 2 cut(s) 523, 1024
Tth111I GACNNNGTC 1 cut(s) 275
Vha464I CTTAAG 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 625, 960
XapI RAATTY 2 cut(s) 152, 430
XceI RCATGY 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.