Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Forward (+)

23464971 .. 23467756

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G232100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGTGAGAAAAAGGAAGGCGCAAAGAATGAGGGCGAGAAGAAGCCCGCCGCAGCCGACGCCGGAGCCAAGAAGGACGACGGCTCGCTCACAGTCGTTTTGAAGACCGACATGCATTGCGAGGGGTGCGCCAAGAAAATCAAACGAGCTGTTAAGAATTTCCAAGGCGTTGAACAAGTGAAGACGGAGTGTGCAGCCAACAAAGTGACTGTGACCGGGAAAGTGGACCCCGCCGGGCTGAGAGAGAAACTGGAACAGAAGATCAAGAAGAAGGTAGATCTCATTTCTCCTCAGCCCAAAAAAGATGGCGGTGGAGATAAAAAGCCAGCTGCTGCAGAGGAAAAGGCTGAGAAGAAGCCAGAAGAGAAAAAGCCGGCTGAGAAGAAGACAGAAGAGAAAAAGCCCAAAGAGGCACCCAAAGAGAGCACTGTGGTCATGAAGATGAGATTGCATTGCGAGGGGTGCATGCAGAAGATGAAGAGTAAAATCTCCAAGTTCAAAGGGGTCAATACGGTGAGTTTTGACGCACCCAAAGACATTGTAACGGTCAAGGGCTTCATGGACGCTCAAGAACTCGTCCCCTACCTCAGAGAGAAGTTCAGGAGGTCCGTCGAAGTGGTCCCACCCAAGAAAGATGACGGTGCCGCCGCCAAGCCAAAAGACGCCGCAGCCGGAGGTGAGAAGAAGGAGAAAGACGGCGGCGGTGAGAAGAAAGATAAAGAAGCTGCCGCCGGTGGAGGCGAGAAGAAAGAAGTTGTCGCCGCAGCACCCGGCGGCGGAGCCCCCAAGGTAGAAGTGAACAAGATGGAGTATTCTGGGTACCCTTACCCTCCTCCCAGTTACTATTGGTACGACGAAGGACACGTATACAACCACAACAAGTTCGTCATGGAGGCCCAAGCGCACCAGGCGCATGTTAGCCAAGGCTCTTCGAGCCATGGCTACGCTGTGCCGACGGAACACTACCCTGCTCCCCAAATGTTCAGCGACGAGAATCCAAATGGTTGTTCGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

340

Amino Acids

36.77

Weight (kDa)

9.1

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	819
AccB1I	GGYRCC	3 cut(s)	412, 641, 819
AccI	GTMKAC	1 cut(s)	867
AcsI	RAATTY	1 cut(s)	157
AcyI	GRCGYC	2 cut(s)	60, 663
AfaI	GTAC	2 cut(s)	821, 851
AfiI	CCNNNNNNNGG	1 cut(s)	776
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	3 cut(s)	103, 173, 499
AjnI	CCWGG	1 cut(s)	906
AjuI	GAANNNNNNNTTGG	1 cut(s)	991
AluBI	AGCT	3 cut(s)	149, 329, 725
AluI	AGCT	3 cut(s)	149, 329, 725
Alw21I	GWGCWC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	894
ApeKI	GCWGC	7 cut(s)	53, 194, 329, 332, 668, 725, 764
ApoI	RAATTY	1 cut(s)	157
Asp718I	GGTACC	1 cut(s)	819
AspLEI	GCGC	4 cut(s)	23, 131, 904, 913
AspS9I	GGNCC	4 cut(s)	226, 606, 619, 895
AsuC2I	CCSGG	3 cut(s)	217, 235, 771
AsuHPI	GGTGA	4 cut(s)	17, 526, 689, 716
AvaII	GGWCC	3 cut(s)	226, 606, 619
BanI	GGYRCC	3 cut(s)	412, 641, 819
BanII	GRGCYC	1 cut(s)	784
BbsI	GAAGAC	3 cut(s)	110, 188, 392
Bbv12I	GWGCWC	1 cut(s)	428
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	7 cut(s)	65, 206, 316, 319, 680, 712, 776
BccI	CCATC	2 cut(s)	299, 799
BceAI	ACGGC	2 cut(s)	97, 712
BciT130I	CCWGG	1 cut(s)	908
BcnI	CCSGG	3 cut(s)	217, 235, 771
BfmI	CTRYAG	1 cut(s)	333
BglII	AGATCT	1 cut(s)	277
Bme1390I	CCNGG	4 cut(s)	217, 235, 771, 908
Bme18I	GGWCC	3 cut(s)	226, 606, 619
BmgT120I	GGNCC	4 cut(s)	226, 606, 619, 895
BmiI	GGNNCC	7 cut(s)	67, 228, 414, 621, 643, 781, 821
BmrFI	CCNGG	4 cut(s)	217, 235, 771, 908
BmrI	ACTGGG	1 cut(s)	831
BmuI	ACTGGG	1 cut(s)	831
BpiI	GAAGAC	3 cut(s)	110, 188, 392
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	3 cut(s)	217, 235, 771
BsaAI	YACGTR	1 cut(s)	865
BsaHI	GRCGYC	2 cut(s)	60, 663
BsaJI	CCNNGG	4 cut(s)	163, 786, 922, 937
Bsc4I	CCNNNNNNNGG	1 cut(s)	776
Bse118I	RCCGGY	2 cut(s)	373, 731
Bse1I	ACTGG	2 cut(s)	255, 837
Bse3DI	GCAATG	2 cut(s)	115, 451
BseBI	CCWGG	1 cut(s)	908
BseDI	CCNNGG	4 cut(s)	163, 786, 922, 937
BseLI	CCNNNNNNNGG	1 cut(s)	776
BseMI	GCAATG	2 cut(s)	115, 451
BseMII	CTCAG	5 cut(s)	230, 305, 339, 369, 601
BseNI	ACTGG	2 cut(s)	255, 837
BseRI	GAGGAG	2 cut(s)	279, 822
BseXI	GCAGC	7 cut(s)	65, 206, 316, 319, 680, 712, 776
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	896
BshNI	GGYRCC	3 cut(s)	412, 641, 819
BsiHKAI	GWGCWC	1 cut(s)	428
BsiSI	CCGG	7 cut(s)	63, 216, 234, 374, 672, 732, 771
BslFI	GGGAC	2 cut(s)	563, 605
BslI	CCNNNNNNNGG	1 cut(s)	776
BsmFI	GGGAC	2 cut(s)	563, 605
BsnI	GGCC	1 cut(s)	896
Bsp1286I	GDGCHC	2 cut(s)	428, 784
Bsp143I	GATC	2 cut(s)	261, 277
Bsp19I	CCATGG	1 cut(s)	937
BspANI	GGCC	1 cut(s)	896
BspCNI	CTCAG	5 cut(s)	231, 304, 340, 370, 600
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	7 cut(s)	67, 228, 414, 621, 643, 781, 821
BspMAI	CTGCAG	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	934
BspT107I	GGYRCC	3 cut(s)	412, 641, 819
BsrDI	GCAATG	2 cut(s)	115, 451
BsrFI	RCCGGY	2 cut(s)	373, 731
BsrI	ACTGG	2 cut(s)	255, 837
BssAI	RCCGGY	2 cut(s)	373, 731
BssECI	CCNNGG	4 cut(s)	163, 786, 922, 937
BssMI	GATC	2 cut(s)	261, 277
BssNAI	GTATAC	1 cut(s)	868
BssNI	GRCGYC	2 cut(s)	60, 663
BssT1I	CCWWGG	4 cut(s)	163, 786, 922, 937
Bst1107I	GTATAC	1 cut(s)	868
Bst2UI	CCWGG	1 cut(s)	908
Bst4CI	ACNGT	6 cut(s)	94, 211, 430, 514, 547, 641
Bst6I	CTCTTC	4 cut(s)	357, 387, 473, 934
BstACI	GRCGYC	2 cut(s)	60, 663
BstBAI	YACGTR	1 cut(s)	865
BstC8I	GCNNGC	5 cut(s)	48, 86, 327, 375, 467
BstDEI	CTNAG	5 cut(s)	239, 291, 348, 378, 587
BstDSI	CCRYGG	1 cut(s)	937
BstHHI	GCGC	4 cut(s)	23, 131, 904, 913
BstKTI	GATC	2 cut(s)	264, 280
BstMBI	GATC	2 cut(s)	261, 277
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 126, 462, 908, 910, 933
BstNI	CCWGG	1 cut(s)	908
BstNSI	RCATGY	3 cut(s)	115, 469, 917
BstSCI	CCNGG	4 cut(s)	215, 233, 769, 906
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	7 cut(s)	65, 206, 316, 319, 680, 712, 776
BstV2I	GAAGAC	3 cut(s)	110, 188, 392
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BstZ17I	GTATAC	1 cut(s)	868
BsuRI	GGCC	1 cut(s)	896
BtgI	CCRYGG	1 cut(s)	937
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	5 cut(s)	48, 86, 327, 375, 467
CaiI	CAGNNNCTG	1 cut(s)	332
CciI	TCATGA	1 cut(s)	435
CfoI	GCGC	4 cut(s)	23, 131, 904, 913
Cfr10I	RCCGGY	2 cut(s)	373, 731
Cfr13I	GGNCC	4 cut(s)	226, 606, 619, 895
CseI	GACGC	4 cut(s)	68, 533, 572, 671
Csp6I	GTAC	2 cut(s)	820, 850
CviAII	CATG	7 cut(s)	112, 436, 466, 559, 889, 914, 938
CviQI	GTAC	2 cut(s)	820, 850
DdeI	CTNAG	5 cut(s)	239, 291, 348, 378, 587
DpnI	GATC	2 cut(s)	263, 279
DpnII	GATC	2 cut(s)	261, 277
Eam1104I	CTCTTC	4 cut(s)	357, 387, 473, 934
EarI	CTCTTC	4 cut(s)	357, 387, 473, 934
EciI	GGCGGA	1 cut(s)	792
Eco130I	CCWWGG	4 cut(s)	163, 786, 922, 937
Eco24I	GRGCYC	1 cut(s)	784
Eco47I	GGWCC	3 cut(s)	226, 606, 619
EcoRII	CCWGG	1 cut(s)	906
EcoT14I	CCWWGG	4 cut(s)	163, 786, 922, 937
EcoT22I	ATGCAT	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	784
ErhI	CCWWGG	4 cut(s)	163, 786, 922, 937
FaeI	CATG	7 cut(s)	115, 439, 469, 562, 892, 917, 941
FaiI	YATR	8 cut(s)	113, 437, 467, 560, 868, 890, 915, 939
FaqI	GGGAC	2 cut(s)	563, 605
FatI	CATG	7 cut(s)	111, 435, 465, 558, 888, 913, 937
FauI	CCCGC	2 cut(s)	55, 238
FblI	GTMKAC	1 cut(s)	867
FriOI	GRGCYC	1 cut(s)	784
GlaI	GCGC	4 cut(s)	22, 130, 903, 912
HaeIII	GGCC	1 cut(s)	896
HapII	CCGG	7 cut(s)	63, 216, 234, 374, 672, 732, 771
HgaI	GACGC	4 cut(s)	68, 533, 572, 671
HhaI	GCGC	4 cut(s)	23, 131, 904, 913
Hin1I	GRCGYC	2 cut(s)	60, 663
Hin1II	CATG	7 cut(s)	115, 439, 469, 562, 892, 917, 941
Hin6I	GCGC	4 cut(s)	21, 129, 902, 911
HinP1I	GCGC	4 cut(s)	21, 129, 902, 911
HinfI	GANTC	1 cut(s)	994
HpaII	CCGG	7 cut(s)	63, 216, 234, 374, 672, 732, 771
HphI	GGTGA	4 cut(s)	17, 526, 689, 716
Hpy166II	GTNNAC	3 cut(s)	226, 799, 868
Hpy188I	TCNGA	1 cut(s)	590
Hpy188III	TCNNGA	4 cut(s)	265, 436, 569, 601
Hpy8I	GTNNAC	3 cut(s)	226, 799, 868
Hpy99I	CGWCG	6 cut(s)	62, 83, 614, 857, 958, 992
HpyAV	CCTTC	5 cut(s)	11, 67, 265, 679, 851
HpyCH4III	ACNGT	6 cut(s)	94, 211, 430, 514, 547, 641
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	6 cut(s)	115, 194, 335, 451, 465, 469
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 126, 462, 908, 910, 933
HpyF3I	CTNAG	5 cut(s)	239, 291, 348, 378, 587
HpySE526I	ACGT	1 cut(s)	864
Hsp92I	GRCGYC	2 cut(s)	60, 663
Hsp92II	CATG	7 cut(s)	115, 439, 469, 562, 892, 917, 941
HspAI	GCGC	4 cut(s)	21, 129, 902, 911
KpnI	GGTACC	1 cut(s)	823
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Kzo9I	GATC	2 cut(s)	261, 277
LguI	GCTCTTC	1 cut(s)	934
LmnI	GCTCC	3 cut(s)	65, 779, 976
Lsp1109I	GCAGC	7 cut(s)	65, 206, 316, 319, 680, 712, 776
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	4 cut(s)	205, 211, 541, 839
MalI	GATC	2 cut(s)	263, 279
MboI	GATC	2 cut(s)	261, 277
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	428, 784
MluCI	AATT	1 cut(s)	157
Mph1103I	ATGCAT	1 cut(s)	117
MroNI	GCCGGC	1 cut(s)	373
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	7 cut(s)	63, 216, 234, 374, 672, 732, 771
MspR9I	CCNGG	4 cut(s)	217, 235, 771, 908
MvaI	CCWGG	1 cut(s)	908
MwoI	GCNNNNNNNGC	6 cut(s)	59, 126, 462, 908, 910, 933
NaeI	GCCGGC	1 cut(s)	375
NciI	CCSGG	3 cut(s)	217, 235, 771
NcoI	CCATGG	1 cut(s)	937
NdeII	GATC	2 cut(s)	261, 277
NgoMIV	GCCGGC	1 cut(s)	373
NlaIII	CATG	7 cut(s)	115, 439, 469, 562, 892, 917, 941
NlaIV	GGNNCC	7 cut(s)	67, 228, 414, 621, 643, 781, 821
NmuCI	GTSAC	2 cut(s)	205, 211
NsiI	ATGCAT	1 cut(s)	117
NspI	RCATGY	3 cut(s)	115, 469, 917
PaeI	GCATGC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	934
PcsI	WCGNNNNNNNCGW	1 cut(s)	861
PdiI	GCCGGC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	994
Ppu21I	YACGTR	1 cut(s)	865
Psp6I	CCWGG	1 cut(s)	906
PspGI	CCWGG	1 cut(s)	906
PspN4I	GGNNCC	7 cut(s)	67, 228, 414, 621, 643, 781, 821
PspPI	GGNCC	4 cut(s)	226, 606, 619, 895
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	821, 851
RsaNI	GTAC	2 cut(s)	820, 850
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	934
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	261, 277
Sau96I	GGNCC	4 cut(s)	226, 606, 619, 895
ScrFI	CCNGG	4 cut(s)	217, 235, 771, 908
SduI	GDGCHC	2 cut(s)	428, 784
SetI	ASST	9 cut(s)	151, 276, 331, 588, 608, 679, 727, 792, 867
SfcI	CTRYAG	1 cut(s)	333
SgrAI	CRCCGGYG	1 cut(s)	731
SinI	GGWCC	3 cut(s)	226, 606, 619
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	1 cut(s)	157
StyD4I	CCNGG	4 cut(s)	215, 233, 769, 906
StyI	CCWWGG	4 cut(s)	163, 786, 922, 937
TaaI	ACNGT	6 cut(s)	94, 211, 430, 514, 547, 641
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	2 cut(s)	612, 932
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	157
TauI	GCSGC	8 cut(s)	53, 647, 650, 668, 702, 731, 764, 777
TfiI	GAWTC	1 cut(s)	994
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	433
TseFI	GTSAC	2 cut(s)	205, 211
TseI	GCWGC	7 cut(s)	53, 194, 329, 332, 668, 725, 764
Tsp45I	GTSAC	2 cut(s)	205, 211
TspDTI	ATGAA	3 cut(s)	452, 491, 547
TspGWI	ACGGA	3 cut(s)	200, 598, 971
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	3 cut(s)	226, 606, 619
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	3 cut(s)	115, 469, 917
XmiI	GTMKAC	1 cut(s)	867
Zsp2I	ATGCAT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.