Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Reverse (-)

15028345 .. 15031074

Gene Structure 2730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGCGAGAAAGTGGAAGGCGCGAAGAAGGCGGCCGATGCCGGCAAGAAGAAGGTCGACGGCGGACCACCCACTTTGGTTTTTAAGATCGATAGGCATTGCGAGTGCCAGGGGCATGCCGACGAAATCATAAAAGCTGTCAAAGACTTCCCCGGCGTTGAACGAGTGAAGATAGATGCCGGAGGCAACAAACTGATGGTGATCGGGAAAGTGGACGCCGCCGCTCTGAAGGCGAGACTCGAGCAGAAGACTAAGAAGAAGGTTGAACTCGTCTCTCCTCAGTCGGCCAAAAAGGAAGGACGCGGTGGAGGAGCAGGAGGAGGAGACAAGAAGAAGGACAACGGCGCCGGAGCCAAGAAAGATGATAAGAAAGCAGTTGCCGGAGGCGGCAAGAAGAAAGACGGAGGTGTTGACAAGAAGAAAGGGAGAGAGGAGGAAACTACCCCCGGAGGCAAGAAGAAAGACAGCGGTGGTGATAAGAAGGAAGTTGCCCCCGGAGGCAAGAAGAAAGACGGCGGTGGTGATAAGAAGGAAGACAAGAAAGGGGGAAAGAAGGAAGTTGCCCCCGGAGGCAAGAAGAAAGACGGCGGTGGTGGCAAGAAGGAAGACAAGAAGGAAGCTGCCCCCAGAGGCGAGAAAAAAAGCCTCTTGATAAAGGAAGCTGCTGGCGGCGTGGTCAGAACTCGTGAGAAGGAGGGAATTGAACCGAAACCTCCCGACGACCCTAATCTTTCCTACCACCAGCCACCGATCCCCTCGGTCAAAAGCGACTCCACCTCAATCGGAACATCCGCGCCGACCAAGAAACAAATCCCGTCCATAGACAGGCCGTCGGACAGAGGCAATGACAAAGATTTTCGAACCCTAGCTTCTACCTCCTATTTTTTCGAAACTCTCAACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

301

Amino Acids

31.55

Weight (kDa)

9.7

Isoelectric Point (pI)

24.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccBSI	CCGCTC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	3 cut(s)	23, 303, 794
AclWI	GGATC	1 cut(s)	745
AcoI	YGGCCR	2 cut(s)	33, 285
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	2 cut(s)	216, 345
AfiI	CCNNNNNNNGG	1 cut(s)	825
AgsI	TTSAA	3 cut(s)	161, 266, 704
AhdI	GACNNNNNGTC	1 cut(s)	829
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	137, 620, 662, 869
AluI	AGCT	4 cut(s)	137, 620, 662, 869
Alw26I	GTCTC	3 cut(s)	229, 277, 318
AlwI	GGATC	1 cut(s)	745
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	33, 285, 827
ApeKI	GCWGC	2 cut(s)	620, 662
AspLEI	GCGC	3 cut(s)	23, 347, 796
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	4 cut(s)	153, 447, 495, 567
AsuHPI	GGTGA	3 cut(s)	211, 485, 533
AsuII	TTCGAA	2 cut(s)	859, 888
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	3 cut(s)	254, 540, 612
BbvI	GCAGC	2 cut(s)	607, 649
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	5 cut(s)	76, 358, 529, 601, 814
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	4 cut(s)	153, 447, 495, 567
BcoDI	GTCTC	3 cut(s)	229, 277, 318
BfaI	CTAG	1 cut(s)	866
BfoI	RGCGCY	1 cut(s)	348
BisI	GCNGC	7 cut(s)	33, 219, 222, 388, 621, 663, 670
BlsI	GCNGC	7 cut(s)	34, 220, 223, 389, 622, 664, 671
Bme1390I	CCNGG	5 cut(s)	110, 153, 447, 495, 567
Bme18I	GGWCC	1 cut(s)	65
BmeRI	GACNNNNNGTC	1 cut(s)	829
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	346, 352
BmrFI	CCNGG	5 cut(s)	110, 153, 447, 495, 567
BmsI	GCATC	2 cut(s)	28, 166
BpiI	GAAGAC	3 cut(s)	254, 540, 612
Bpu14I	TTCGAA	2 cut(s)	859, 888
BpuMI	CCSGG	4 cut(s)	153, 447, 495, 567
Bsa29I	ATCGAT	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	200
BsaHI	GRCGYC	2 cut(s)	216, 345
BsaJI	CCNNGG	6 cut(s)	109, 151, 445, 493, 565, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	825
Bse118I	RCCGGY	1 cut(s)	41
Bse3DI	GCAATG	2 cut(s)	97, 850
Bse8I	GATNNNNATC	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	6 cut(s)	109, 151, 445, 493, 565, 756
BseGI	GGATG	1 cut(s)	788
BseJI	GATNNNNATC	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	825
BseMI	GCAATG	2 cut(s)	97, 850
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	5 cut(s)	267, 324, 333, 336, 446
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	607, 649
Bsh1236I	CGCG	3 cut(s)	23, 303, 794
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	35, 287, 829
BshNI	GGYRCC	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	8 cut(s)	42, 153, 180, 348, 381, 447, 495, 567
BslI	CCNNNNNNNGG	1 cut(s)	825
BsmAI	GTCTC	3 cut(s)	229, 277, 318
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	35, 287, 829
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	2 cut(s)	859, 888
Bsp143I	GATC	3 cut(s)	87, 201, 750
BspANI	GGCC	3 cut(s)	35, 287, 829
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	3 cut(s)	23, 303, 794
BspLI	GGNNCC	2 cut(s)	346, 352
BspPI	GGATC	1 cut(s)	745
BspT104I	TTCGAA	2 cut(s)	859, 888
BspT107I	GGYRCC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	97, 850
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	6 cut(s)	109, 151, 445, 493, 565, 756
BssMI	GATC	3 cut(s)	87, 201, 750
BssNI	GRCGYC	2 cut(s)	216, 345
BssSI	CACGAG	1 cut(s)	684
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	110
BstACI	GRCGYC	2 cut(s)	216, 345
BstBI	TTCGAA	2 cut(s)	859, 888
BstC8I	GCNNGC	3 cut(s)	43, 117, 667
BstDEI	CTNAG	2 cut(s)	252, 279
BstF5I	GGATG	1 cut(s)	788
BstFNI	CGCG	3 cut(s)	23, 303, 794
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	3 cut(s)	23, 347, 796
BstKTI	GATC	3 cut(s)	90, 204, 753
BstMAI	GTCTC	3 cut(s)	229, 277, 318
BstMBI	GATC	3 cut(s)	87, 201, 750
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 230, 594
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	5 cut(s)	108, 151, 445, 493, 565
BstUI	CGCG	3 cut(s)	23, 303, 794
BstV1I	GCAGC	2 cut(s)	607, 649
BstV2I	GAAGAC	3 cut(s)	254, 540, 612
BstZI	CGGCCG	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	35, 287, 829
BsuTUI	ATCGAT	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	788
Cac8I	GCNNGC	3 cut(s)	43, 117, 667
CfoI	GCGC	3 cut(s)	23, 347, 796
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	65
ClaI	ATCGAT	1 cut(s)	90
CseI	GACGC	2 cut(s)	224, 309
CspCI	CAANNNNNGTGG	2 cut(s)	57, 92
CviAII	CATG	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	252, 279
DinI	GGCGCC	1 cut(s)	346
DpnI	GATC	3 cut(s)	89, 203, 752
DpnII	GATC	3 cut(s)	87, 201, 750
DriI	GACNNNNNGTC	1 cut(s)	829
EaeI	YGGCCR	2 cut(s)	33, 285
EagI	CGGCCG	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	829
EciI	GGCGGA	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	65
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	119
FaiI	YATR	4 cut(s)	117, 131, 821, 904
FatI	CATG	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	7 cut(s)	33, 219, 222, 388, 621, 663, 670
FokI	GGATG	1 cut(s)	775
Fsp4HI	GCNGC	7 cut(s)	33, 219, 222, 388, 621, 663, 670
FspBI	CTAG	1 cut(s)	866
GlaI	GCGC	3 cut(s)	22, 346, 795
GluI	GCNGC	7 cut(s)	33, 219, 222, 388, 621, 663, 670
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	35, 287, 829
HapII	CCGG	8 cut(s)	42, 153, 180, 348, 381, 447, 495, 567
HgaI	GACGC	2 cut(s)	224, 309
HhaI	GCGC	3 cut(s)	23, 347, 796
Hin1I	GRCGYC	2 cut(s)	216, 345
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	3 cut(s)	21, 345, 794
HinP1I	GCGC	3 cut(s)	21, 345, 794
HincII	GTYRAC	2 cut(s)	58, 412
HindII	GTYRAC	2 cut(s)	58, 412
HinfI	GANTC	2 cut(s)	237, 770
HpaII	CCGG	8 cut(s)	42, 153, 180, 348, 381, 447, 495, 567
HphI	GGTGA	3 cut(s)	211, 485, 533
Hpy166II	GTNNAC	3 cut(s)	58, 214, 412
Hpy188I	TCNGA	4 cut(s)	228, 680, 785, 835
Hpy188III	TCNNGA	4 cut(s)	205, 649, 686, 716
Hpy8I	GTNNAC	3 cut(s)	58, 214, 412
Hpy99I	CGWCG	4 cut(s)	62, 125, 722, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 230, 594
HpyF3I	CTNAG	2 cut(s)	252, 279
Hsp92I	GRCGYC	2 cut(s)	216, 345
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	3 cut(s)	21, 345, 794
KasI	GGCGCC	1 cut(s)	344
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	87, 201, 750
LmnI	GCTCC	2 cut(s)	311, 350
Lsp1109I	GCAGC	2 cut(s)	607, 649
LweI	GCATC	2 cut(s)	28, 166
MaeI	CTAG	1 cut(s)	866
MalI	GATC	3 cut(s)	89, 203, 752
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	3 cut(s)	87, 201, 750
MluCI	AATT	1 cut(s)	699
Mly113I	GGCGCC	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	231, 764
MmeI	TCCRAC	1 cut(s)	813
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	468
MspI	CCGG	8 cut(s)	42, 153, 180, 348, 381, 447, 495, 567
MspR9I	CCNGG	5 cut(s)	110, 153, 447, 495, 567
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	3 cut(s)	23, 303, 794
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 230, 594
NaeI	GCCGGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	345
NciI	CCSGG	4 cut(s)	153, 447, 495, 567
NdeII	GATC	3 cut(s)	87, 201, 750
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	346, 352
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	2 cut(s)	859, 888
PaeI	GCATGC	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	239
PdiI	GCCGGC	1 cut(s)	43
PkrI	GCNGC	7 cut(s)	34, 220, 223, 389, 622, 664, 671
PleI	GAGTC	2 cut(s)	231, 764
PluTI	GGCGCC	1 cut(s)	348
PpsI	GAGTC	2 cut(s)	231, 764
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	346, 352
PspPI	GGNCC	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	239
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	7 cut(s)	33, 219, 222, 388, 621, 663, 670
Sau3AI	GATC	3 cut(s)	87, 201, 750
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	2 cut(s)	231, 764
ScrFI	CCNGG	5 cut(s)	110, 153, 447, 495, 567
SfaNI	GCATC	2 cut(s)	28, 166
SfoI	GGCGCC	1 cut(s)	346
Sfr274I	CTCGAG	1 cut(s)	239
SfuI	TTCGAA	2 cut(s)	859, 888
SinI	GGWCC	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	1 cut(s)	699
SspDI	GGCGCC	1 cut(s)	344
SspMI	CTAG	1 cut(s)	866
StyD4I	CCNGG	5 cut(s)	108, 151, 445, 493, 565
TaqI	TCGA	5 cut(s)	57, 90, 240, 859, 888
TaqII	GACCGA	1 cut(s)	748
TasI	AATT	1 cut(s)	699
TauI	GCSGC	5 cut(s)	35, 221, 224, 390, 672
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	2 cut(s)	620, 662
TspGWI	ACGGA	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	65
XceI	RCATGY	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	1 cut(s)	866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.