Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Forward (+)

34184202 .. 34189310

Gene Structure 5109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024290

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGATCTACCGTCTCTGTCGACCTCGAAAAAGACCTCCAAAGCACCGCCGTCATGCGAAGAAGACCTCCAAGGCACCGCTGCCACGTGAAGAAGACCTCCATAGCTTCGCCGCCACACGAGGAAGGTCTCTGGTTCCAGGCTCTGCCGCTACGCAGCTGCATCTCCGATTCCAAGCAGTGGGGACTCGACTCGACCCAATCCTCCCTCTTCCGGCCCCAACGCGACCACGGGACAGCATCTCTGATTCCAAGCAGTGGCGACCCGACCCTGCTATCAAGCTACCCCAGCAAAGGAAGCCATATGATTTGAATTTGAAAATGGGTTTGAAAGTGGAAGGCGCGAAGAATGAAGGCGAGAAGAAGGCCGCCGACGTTGGAAAAAAGGTCGACGGCGGGCCAACCGCTCTCGTTTTTAAGATCGAATGGCATTCCTGGGGATGCGCCAGGAAAATCAGAACAGCTCTCAAACGCTTCCAAGGCGTTGAACAAGTGAAGACAGATGTAGAAGCCAACAAACTGACGGTGACCGGGAAAGTGGACGTCGCCGCTCTGAAGGCGAGACTCGAGGAGAAGATTAAGAACGTCGACCTCGTCTCTCCTCAGCCGGCCAAAAAGGAAGGAGTTGGTGGAGGAGCAAGAGGAGGAGACAAGAAGAAGGACGACGACGCAAAAGGGAGAAAGAAGGAAGCTGCCACCGGAGACGAGAAGAAAGACGGCGGTGGTGCTAAGAAGGATGAAAAGAAAGAGGGAAAGAAGGAAGCTGCCCTCGGAGGCGACAAGAAAGACGGCGATGGTGATAAGAAGGAAGCTACCCCCGGAGGTGAGAAAAAAGAGAAGAAAGAGGATTGCTTCGATTGGAATTTGATTTGCTCCTCTTGTTCTGTTTTGGGAGCCTACCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

302

Amino Acids

33.03

Weight (kDa)

9.78

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	143 - 191	3.2e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	73
AccB7I	CCANNNNNTGG	2 cut(s)	178, 255
AccBSI	CCGCTC	2 cut(s)	404, 548
AccI	GTMKAC	3 cut(s)	19, 387, 585
AccII	CGCG	2 cut(s)	223, 341
AciI	CCGC	9 cut(s)	46, 77, 111, 147, 366, 393, 402, 546, 717
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	2 cut(s)	310, 859
AcuI	CTGAAG	1 cut(s)	572
AcvI	CACGTG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	540
AfiI	CCNNNNNNNGG	4 cut(s)	178, 211, 255, 291
AgsI	TTSAA	4 cut(s)	310, 316, 328, 485
AjnI	CCWGG	3 cut(s)	136, 431, 443
AluBI	AGCT	7 cut(s)	105, 157, 280, 461, 689, 761, 809
AluI	AGCT	7 cut(s)	105, 157, 280, 461, 689, 761, 809
Alw26I	GTCTC	6 cut(s)	17, 132, 553, 598, 639, 693
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	4 cut(s)	213, 363, 395, 606
ApeKI	GCWGC	5 cut(s)	79, 154, 157, 689, 761
ApoI	RAATTY	2 cut(s)	310, 859
AspLEI	GCGC	2 cut(s)	341, 443
AspS9I	GGNCC	2 cut(s)	214, 395
AsuC2I	CCSGG	2 cut(s)	529, 816
AsuHPI	GGTGA	3 cut(s)	535, 806, 833
AvaI	CYCGRG	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	73
BauI	CACGAG	1 cut(s)	117
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	3 cut(s)	68, 99, 500
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	5 cut(s)	66, 144, 166, 676, 748
BccI	CCATC	1 cut(s)	785
BceAI	ACGGC	4 cut(s)	33, 406, 730, 802
BciT130I	CCWGG	3 cut(s)	138, 433, 445
BcnI	CCSGG	2 cut(s)	529, 816
BcoDI	GTCTC	6 cut(s)	17, 132, 553, 598, 639, 693
BisI	GCNGC	9 cut(s)	80, 111, 147, 155, 158, 366, 546, 690, 762
BlsI	GCNGC	9 cut(s)	81, 112, 148, 156, 159, 367, 547, 691, 763
Bme1390I	CCNGG	5 cut(s)	138, 433, 445, 529, 816
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	214, 395
BmiI	GGNNCC	4 cut(s)	75, 135, 216, 892
BmrFI	CCNGG	5 cut(s)	138, 433, 445, 529, 816
BmsI	GCATC	3 cut(s)	169, 246, 428
BpiI	GAAGAC	3 cut(s)	68, 99, 500
Bpu10I	CCTNAGC	1 cut(s)	600
BpuMI	CCSGG	2 cut(s)	529, 816
BsaAI	YACGTR	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	6 cut(s)	69, 227, 432, 475, 766, 814
BsaWI	WCCGGW	1 cut(s)	695
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 211, 255, 291
Bse118I	RCCGGY	1 cut(s)	604
BseBI	CCWGG	3 cut(s)	138, 433, 445
BseDI	CCNNGG	6 cut(s)	69, 227, 432, 475, 766, 814
BseGI	GGATG	2 cut(s)	443, 739
BseLI	CCNNNNNNNGG	4 cut(s)	178, 211, 255, 291
BseMII	CTCAG	1 cut(s)	614
BseRI	GAGGAG	6 cut(s)	581, 588, 645, 654, 657, 862
BseXI	GCAGC	5 cut(s)	66, 144, 166, 676, 748
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	2 cut(s)	223, 341
BshFI	GGCC	4 cut(s)	215, 365, 397, 608
BshNI	GGYRCC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	5 cut(s)	212, 528, 605, 696, 816
BslFI	GGGAC	2 cut(s)	196, 245
BslI	CCNNNNNNNGG	4 cut(s)	178, 211, 255, 291
BsmAI	GTCTC	6 cut(s)	17, 132, 553, 598, 639, 693
BsmBI	CGTCTC	3 cut(s)	17, 598, 693
BsmFI	GGGAC	2 cut(s)	196, 245
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	4 cut(s)	215, 365, 397, 608
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	3, 417
BspACI	CCGC	9 cut(s)	46, 77, 111, 147, 366, 393, 402, 546, 717
BspANI	GGCC	4 cut(s)	215, 365, 397, 608
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	2 cut(s)	223, 341
BspLI	GGNNCC	4 cut(s)	75, 135, 216, 892
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	132
BsrBI	CCGCTC	2 cut(s)	404, 548
BsrFI	RCCGGY	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	6 cut(s)	69, 227, 432, 475, 766, 814
BssMI	GATC	2 cut(s)	3, 417
BssNI	GRCGYC	1 cut(s)	540
BssSI	CACGAG	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	69, 475
Bst2BI	CACGAG	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	138, 433, 445
Bst4CI	ACNGT	2 cut(s)	11, 523
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	395, 606
BstDEI	CTNAG	2 cut(s)	600, 726
BstDSI	CCRYGG	1 cut(s)	227
BstEII	GGTNACC	1 cut(s)	523
BstF5I	GGATG	2 cut(s)	443, 739
BstFNI	CGCG	2 cut(s)	223, 341
BstHHI	GCGC	2 cut(s)	341, 443
BstKTI	GATC	2 cut(s)	6, 420
BstMAI	GTCTC	6 cut(s)	17, 132, 553, 598, 639, 693
BstMBI	GATC	2 cut(s)	3, 417
BstMWI	GCNNNNNNNGC	4 cut(s)	286, 295, 477, 554
BstNI	CCWGG	3 cut(s)	138, 433, 445
BstPI	GGTNACC	1 cut(s)	523
BstSCI	CCNGG	5 cut(s)	136, 431, 443, 527, 814
BstUI	CGCG	2 cut(s)	223, 341
BstV1I	GCAGC	5 cut(s)	66, 144, 166, 676, 748
BstV2I	GAAGAC	3 cut(s)	68, 99, 500
BsuRI	GGCC	4 cut(s)	215, 365, 397, 608
BtgI	CCRYGG	1 cut(s)	227
BtgZI	GCGATG	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	443, 739
BtsI	GCAGTG	2 cut(s)	183, 260
BtsIMutI	CAGTG	2 cut(s)	183, 260
Cac8I	GCNNGC	2 cut(s)	395, 606
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	2 cut(s)	341, 443
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	2 cut(s)	214, 395
CseI	GACGC	1 cut(s)	674
CviAII	CATG	1 cut(s)	53
DdeI	CTNAG	2 cut(s)	600, 726
DpnI	GATC	2 cut(s)	5, 419
DpnII	GATC	2 cut(s)	3, 417
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	69, 475
Eco31I	GGTCTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	572
Eco72I	CACGTG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	563
Eco91I	GGTNACC	1 cut(s)	523
EcoO65I	GGTNACC	1 cut(s)	523
EcoRII	CCWGG	3 cut(s)	136, 431, 443
EcoT14I	CCWWGG	2 cut(s)	69, 475
ErhI	CCWWGG	2 cut(s)	69, 475
Esp3I	CGTCTC	3 cut(s)	17, 598, 693
FaeI	CATG	1 cut(s)	56
FaiI	YATR	4 cut(s)	54, 102, 301, 303
FaqI	GGGAC	2 cut(s)	196, 245
FatI	CATG	1 cut(s)	52
FauI	CCCGC	1 cut(s)	386
FauNDI	CATATG	1 cut(s)	301
FblI	GTMKAC	3 cut(s)	19, 387, 585
Fnu4HI	GCNGC	9 cut(s)	80, 111, 147, 155, 158, 366, 546, 690, 762
FokI	GGATG	2 cut(s)	450, 746
Fsp4HI	GCNGC	9 cut(s)	80, 111, 147, 155, 158, 366, 546, 690, 762
GlaI	GCGC	2 cut(s)	340, 442
GluI	GCNGC	9 cut(s)	80, 111, 147, 155, 158, 366, 546, 690, 762
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	4 cut(s)	215, 365, 397, 608
HapII	CCGG	5 cut(s)	212, 528, 605, 696, 816
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	2 cut(s)	341, 443
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	339, 441
HinP1I	GCGC	2 cut(s)	339, 441
HincII	GTYRAC	3 cut(s)	20, 388, 586
HindII	GTYRAC	3 cut(s)	20, 388, 586
HinfI	GANTC	5 cut(s)	168, 184, 189, 245, 561
HpaII	CCGG	5 cut(s)	212, 528, 605, 696, 816
HphI	GGTGA	3 cut(s)	535, 806, 833
Hpy166II	GTNNAC	4 cut(s)	20, 388, 538, 586
Hpy188I	TCNGA	5 cut(s)	167, 244, 455, 552, 770
Hpy8I	GTNNAC	4 cut(s)	20, 388, 538, 586
Hpy99I	CGWCG	6 cut(s)	374, 392, 545, 587, 665, 668
HpyCH4III	ACNGT	2 cut(s)	11, 523
HpyCH4IV	ACGT	4 cut(s)	85, 372, 540, 582
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	286, 295, 477, 554
HpyF3I	CTNAG	2 cut(s)	600, 726
HpySE526I	ACGT	4 cut(s)	85, 372, 540, 582
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	339, 441
KroI	GCCGGC	1 cut(s)	604
KroNI	GCCGGC	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	3, 417
LmnI	GCTCC	3 cut(s)	632, 875, 890
Lsp1109I	GCAGC	5 cut(s)	66, 144, 166, 676, 748
LweI	GCATC	3 cut(s)	169, 246, 428
MaeII	ACGT	4 cut(s)	85, 372, 540, 582
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	5, 419
MbiI	CCGCTC	2 cut(s)	404, 548
MboI	GATC	2 cut(s)	3, 417
MluCI	AATT	2 cut(s)	310, 859
MlyI	GAGTC	3 cut(s)	178, 183, 555
MmeI	TCCRAC	1 cut(s)	355
MroNI	GCCGGC	1 cut(s)	604
MseI	TTAA	2 cut(s)	414, 576
MspA1I	CMGCKG	2 cut(s)	79, 157
MspI	CCGG	5 cut(s)	212, 528, 605, 696, 816
MspR9I	CCNGG	5 cut(s)	138, 433, 445, 529, 816
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	3 cut(s)	138, 433, 445
MvnI	CGCG	2 cut(s)	223, 341
MwoI	GCNNNNNNNGC	4 cut(s)	286, 295, 477, 554
NaeI	GCCGGC	1 cut(s)	606
NciI	CCSGG	2 cut(s)	529, 816
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	2 cut(s)	3, 417
NgoMIV	GCCGGC	1 cut(s)	604
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	4 cut(s)	75, 135, 216, 892
NmuCI	GTSAC	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PctI	GAATGC	1 cut(s)	427
PdiI	GCCGGC	1 cut(s)	606
PfeI	GAWTC	2 cut(s)	168, 245
PflFI	GACNNNGTC	1 cut(s)	590
PflMI	CCANNNNNTGG	2 cut(s)	178, 255
PkrI	GCNGC	9 cut(s)	81, 112, 148, 156, 159, 367, 547, 691, 763
PleI	GAGTC	3 cut(s)	178, 183, 555
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	3 cut(s)	178, 183, 555
Ppu21I	YACGTR	1 cut(s)	86
Psp6I	CCWGG	3 cut(s)	136, 431, 443
PspCI	CACGTG	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	3 cut(s)	136, 431, 443
PspN4I	GGNNCC	4 cut(s)	75, 135, 216, 892
PspPI	GGNCC	2 cut(s)	214, 395
PspXI	VCTCGAGB	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	157
SalI	GTCGAC	3 cut(s)	18, 386, 584
SaqAI	TTAA	2 cut(s)	414, 576
SatI	GCNGC	9 cut(s)	80, 111, 147, 155, 158, 366, 546, 690, 762
Sau3AI	GATC	2 cut(s)	3, 417
Sau96I	GGNCC	2 cut(s)	214, 395
SchI	GAGTC	3 cut(s)	178, 183, 555
ScrFI	CCNGG	5 cut(s)	138, 433, 445, 529, 816
SfaNI	GCATC	3 cut(s)	169, 246, 428
Sfr274I	CTCGAG	1 cut(s)	563
SlaI	CTCGAG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	2 cut(s)	310, 859
SsiI	CCGC	9 cut(s)	46, 77, 111, 147, 366, 393, 402, 546, 717
SspI	AATATT	1 cut(s)	902
StyD4I	CCNGG	5 cut(s)	136, 431, 443, 527, 814
StyI	CCWWGG	2 cut(s)	69, 475
TaaI	ACNGT	2 cut(s)	11, 523
TaiI	ACGT	4 cut(s)	88, 375, 543, 585
TaqI	TCGA	9 cut(s)	19, 25, 187, 192, 387, 420, 564, 585, 852
TasI	AATT	2 cut(s)	310, 859
TauI	GCSGC	4 cut(s)	113, 149, 368, 548
TfiI	GAWTC	2 cut(s)	168, 245
Tru1I	TTAA	2 cut(s)	414, 576
Tru9I	TTAA	2 cut(s)	414, 576
TscAI	CASTG	2 cut(s)	183, 260
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	5 cut(s)	79, 154, 157, 689, 761
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	2 cut(s)	363, 750
TspRI	CASTG	2 cut(s)	183, 260
Tth111I	GACNNNGTC	1 cut(s)	590
Van91I	CCANNNNNTGG	2 cut(s)	178, 255
XapI	RAATTY	2 cut(s)	310, 859
XhoI	CTCGAG	1 cut(s)	563
XmiI	GTMKAC	3 cut(s)	19, 387, 585
ZraI	GACGTC	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.